GBrowse Details

Vigan.09G141900.01

Basic Information:
Name: Vigan.09G141900.01
Multiple alignment
Variant Information
Position: Chr09:27404806..27406899 (+ strand)
Length: 2094
Functional Information:
Description: Similar to Ubiquitin-related modifier 1 homolog. [I1KIJ0, Glycine max]
GO: Biological Process: tRNA thio-modification (GO:0034227)
Cellular Component: cytoplasm (GO:0005737)
InterPro: Beta-grasp domain (IPR012675)
Ubiquitin-related modifier 1 (IPR015221)
Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp (IPR016155)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:87.41,88.38,21.33,30.86,34.00,35.76, 40.63,21.58
Arabidopsis thaliana homolog: AT3G61113.1
Structure :
Position: Chr09:27404806..27404921 (+ strand)
Length: 116
Type: five_prime_UTR
Position: Chr09:27404922..27404944 (+ strand)
Length: 23
Type: CDS
Position: Chr09:27405685..27405760 (+ strand)
Length: 76
Type: CDS
Position: Chr09:27405847..27405929 (+ strand)
Length: 83
Type: CDS
Position: Chr09:27406197..27406314 (+ strand)
Length: 118
Type: CDS
Position: Chr09:27406315..27406899 (+ strand)
Length: 585
Type: three_prime_UTR

>Vigan.09G141900.01 class=Sequence position=Chr09:27404806..27406899 (+ strand)
TAGGAATAAA AGTTTAGGGC TTTTGAAGTT TAATTTGAAG AGTTCTCTCT TTCTCTTTCC TCTTTCGATT GTTCCTCTCT
CTAGGGTTTT GGGGGTTCTG AGGATCGTTG TTGAACATGC AGCTGACGCT TGAATTCGGG TAAAGTTTAA TTGGTACCAA
TTTCTTCTTT CAAAGGTTTT GGGTGGTATG TTTATGAAAA AATTATAGGA ACTGGAGAAG GTATTCAAAT TTTTAAATCT
AATATTGTTG ATGATATTCT GTTTGTATTA ATTAAGTTAT AAGTTACAGA GTGTTATTTT AGAAATTGTA TGGTTTATCT
TTTTCTATTT GTTTGTTTGG TTGGTAAACA GTAACATGGA TTTTTTCAGC ATCATCATAT GAAATTTTGA TGTTGTTTTT
AACATTGTCG ATGGCCGTTA TCATCTATTC AACTTGTGTG ATGGGATGAT GTTCTTAGCT ACAGTGTTTT ATTAGCATCA
TGATCCCACT CTATGATGCT AATCATCACA TTCGAAAATA ATAGGTAGGA CATTATTGAA AGAAACTCTA TGCGACAATT
GTGACATTGG GGTTGGAGAT AGGGCAGAGA ATGTGATATT TGCAAAGTAT GGAACTTGGT GGAGTGCAAT ATAAATTAAT
CTTACAATTA ATCATGGTGC TTGGATGTGT ATCCTATTAG ACTCCATCGT AATATAGAAT AATATATATA TATATATATA
TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA
TATATATATA TATATATATA TATATGAGAT TAGAACATGG AGTCTTTTTG TGATCTGATA ACATTACTGA AACATACAGT
GGAGGATTGG AACTTCTTTG TGACTCTAAG AAGATTCATA ATGTCAATAT TGAGCAACAT AATGGAGAAG GCAAGGTACT
GTATACAGCC ATAAATATAT TATAACTATG TACATTGGAA CATTCTTTCA TTCTTCTGTC ATTTTCTCCT TACTTTCTCA
GTTAATCATG AAAGATTTGC TTTCTTGGGT ACGGACAAAC TTGATTAAGG AGAGGCCTGA GATGTTCATG AAAGGAGACA
CTGTGTAAGT TTTATGATCC AAATACATTA TATATAAGCA TTGGTAATAG GAACAAGTTA GCTTGTTTAT GTTTACCATC
AATTTACTGT ATATGCTCTA TTGCAAACTT CAGATATAGC TTACTATAAT ATAATTAAGC CTGAGTTTTT CTCATTAGTT
TATGCTTAAA CTAATTAAGA TTACTAAACT GAATATTTGC CGTATGCATA TATGTGTAAT ATTATAGTGC TAAAAAATGT
TAATGTTTTG GTTGTGTGGT TTGTTGTGTA GGAGACCTGG AGTTCTTGTC CTGGTGAATG ACTGTGATTG GGAGCTAAGT
GGTCAGCTGG ACACATCACT CGAAGAGAAA GATGTGGTGG TTTTTATATC AACCCTGCAT GGTGGTTAGA ACACAGATTT
TCTAATGGTT ATCACTTATT GTTAAACATA GTTGTTGAAG TCATTTGGAA CCTTGATAAC TAAAAAGTTT GTGGATGAAC
AAACTTACAT AGTCTAGTAT GCATAATGTT ATTTATAGTC CTTAATTTCA CTGAAATCAA ATTTGTATTG CATTACAGTG
TTTAGGCTTT GTTACGAAAA TAGGCAAAAA TGGATCGTAT ATTACGAAAA TGGGTAAATT CTATTCAAAA TACCAAAATG
GGGAAGTCAT GGGGGGCCAG AACGACTTTA AATCAAGAAG TCGTGTCCCA CTGCACGACT TCACACGGTT CATTTGACCA
GTGGTGAAGT CGTGCACCCC AAAAACGACT TCAGGGTGTT GTAATCGATT ACAAGATCCT TTAATCAATT AAAGCGTGTT
GAAGTCGTGT CTCCCCTACA CGACTTCACC TTTATAGGCA AACATGGTTC TGGTAGTCGA TTATAGAAGT GTAGTAATCG
ATTACAACGT GTTGAAGTCG TGTCCCCCCT GCACGACTTC ACCTTTGTAG GCAAAAATGT TTCTGGTAAT CGATTACTAC
ACTTCTGTAA TCGA

>Vigan.09G141900.01
TAGGAATAAA AGTTTAGGGC TTTTGAAGTT TAATTTGAAG AGTTCTCTCT TTCTCTTTCC TCTTTCGATT GTTCCTCTCT
CTAGGGTTTT GGGGGTTCTG AGGATCGTTG TTGAACATGC AGCTGACGCT TGAATTCGGT GGAGGATTGG AACTTCTTTG
TGACTCTAAG AAGATTCATA ATGTCAATAT TGAGCAACAT AATGGAGAAG GCAAGTTAAT CATGAAAGAT TTGCTTTCTT
GGGTACGGAC AAACTTGATT AAGGAGAGGC CTGAGATGTT CATGAAAGGA GACACTGTGA GACCTGGAGT TCTTGTCCTG
GTGAATGACT GTGATTGGGA GCTAAGTGGT CAGCTGGACA CATCACTCGA AGAGAAAGAT GTGGTGGTTT TTATATCAAC
CCTGCATGGT GGTTAGAACA CAGATTTTCT AATGGTTATC ACTTATTGTT AAACATAGTT GTTGAAGTCA TTTGGAACCT
TGATAACTAA AAAGTTTGTG GATGAACAAA CTTACATAGT CTAGTATGCA TAATGTTATT TATAGTCCTT AATTTCACTG
AAATCAAATT TGTATTGCAT TACAGTGTTT AGGCTTTGTT ACGAAAATAG GCAAAAATGG ATCGTATATT ACGAAAATGG
GTAAATTCTA TTCAAAATAC CAAAATGGGG AAGTCATGGG GGGCCAGAAC GACTTTAAAT CAAGAAGTCG TGTCCCACTG
CACGACTTCA CACGGTTCAT TTGACCAGTG GTGAAGTCGT GCACCCCAAA AACGACTTCA GGGTGTTGTA ATCGATTACA
AGATCCTTTA ATCAATTAAA GCGTGTTGAA GTCGTGTCTC CCCTACACGA CTTCACCTTT ATAGGCAAAC ATGGTTCTGG
TAGTCGATTA TAGAAGTGTA GTAATCGATT ACAACGTGTT GAAGTCGTGT CCCCCCTGCA CGACTTCACC TTTGTAGGCA
AAAATGTTTC TGGTAATCGA TTACTACACT TCTGTAATCG A

>Vigan.09G141900.01
ATGCAGCTGA CGCTTGAATT CGGTGGAGGA TTGGAACTTC TTTGTGACTC TAAGAAGATT CATAATGTCA ATATTGAGCA
ACATAATGGA GAAGGCAAGT TAATCATGAA AGATTTGCTT TCTTGGGTAC GGACAAACTT GATTAAGGAG AGGCCTGAGA
TGTTCATGAA AGGAGACACT GTGAGACCTG GAGTTCTTGT CCTGGTGAAT GACTGTGATT GGGAGCTAAG TGGTCAGCTG
GACACATCAC TCGAAGAGAA AGATGTGGTG GTTTTTATAT CAACCCTGCA TGGTGGTTAG 

>Vigan.09G141900.01
MQLTLEFGGG LELLCDSKKI HNVNIEQHNG EGKLIMKDLL SWVRTNLIKE RPEMFMKGDT VRPGVLVLVN DCDWELSGQL
DTSLEEKDVV VFISTLHGG*