GBrowse Details

Vigan.09G112600.01

Basic Information:
Name: Vigan.09G112600.01
Multiple alignment
Variant Information
Position: Chr09:17550797..17552657 (+ strand)
Length: 1861
Functional Information:
Description: Similar to Uncharacterized protein. [I1J7Q2, Glycine max]
GO: Biological Process: regulation of cyclin-dependent protein serine/threonine kinase activity (GO:0000079)
Molecular Function: protein kinase binding (GO:0019901)
InterPro: Cyclin P/U (IPR012389)
Cyclin-like (IPR013763)
Cyclin PHO80-like (IPR013922)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.13,0.88,11.91,0.30,0.68,12.77,7.87 ,7.54
Arabidopsis thaliana homolog: AT2G45080.1
Automatic updates:
Name: BT052177 NCBI(nuccore)
Organism: Medicago truncatula
Description: UNVERIFIED: Medicago truncatula clone MTYF9_FA_FB_FC1G-D-15 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: BT089166 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-1C16 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:17550797..17551182 (+ strand)
Length: 386
Type: five_prime_UTR
Position: Chr09:17551183..17551595 (+ strand)
Length: 413
Type: CDS
Position: Chr09:17552184..17552448 (+ strand)
Length: 265
Type: CDS
Position: Chr09:17552449..17552657 (+ strand)
Length: 209
Type: three_prime_UTR

>Vigan.09G112600.01 class=Sequence position=Chr09:17550797..17552657 (+ strand)
GGCACTCGTA TCTTAATAGT TTTCATTTTC ATGTTTTTTT ATTATCAAGC TTCCACCCAC TATCCCTCGT TCCAAACTCA
AAACCCTTCT TTTGGAGTTT TCTTTCTACA TAAATAAAAT GCCACTGAAT AATATTTTCA TCATGAAAAT AAAATAAACA
AACAAATCTC TATCTTTATT ATTCCCCTTC TTCCGATCCC AATTCCCCTT TATATATATA AAGCCTTCTT CCAAAAACCT
TCTTCATCAT CAACACCAAC ACAAAAACCC ATCATCATTT GCTGTTTAAT GCTCAACACC AAATACCCTT TTGGATTTGG
AGCTTATCAG ATCAATCCCC TTCAAAATCT TCCTCTTCTG AAGTTAAAAG AAGCAATTTT TTTCTCATGG CCTCTTCTTC
TTCTTCTCTT GCAATATCCC CAAGGAAGCT GCGCTATGAT CTTTATTCTT ATTCATACAA AGAAGATTCC AACACCCCAT
TAGTGATAAA TGTGCTGGCT TCACTCATTG AGAGGAGCAT GGCTAGGACA CAGAGGATTG TGAAGAACTG TTCAAGTGCT
TTGTCCAAAG CCATCAGCAC AAACATCTTC GATTGTAGAG AGATTCCTGA TATGACCATT CAATCCTATC TAGAGAGAAT
TTTCAGGTAC ACTAGAGCAG GACCATCTGT GTATGTTGTT GCCTATGTCT ACATTGACCG CTTCTGCCAA AACAATCCAG
GGTTTAGGAT CAATGCCAGA AATGTGCACA GACTTCTGAT AACAACTATC ATGGTGGCTT CTAAGTATGT GGAAGATATG
TAAGTTCTCT TCTCCCTCTT TTGTTTCTCT ATTTGATTCT TTTGTTCAAC CCTGGGTTGA ACTGATCTTG AAGAAATGTT
AACCTTTTTC TTTTTCTAAG TATACTTAAT AACAGATTAT CTGAAGAAGA AATCATAAAA GACATGAAAG TGTTATCAGT
TGTTACTTTT TCTGCAGAAA AATTCTATGG CACCCCAGAA ACTTACTGAT ATTGAAAAAC TCTGCCTCTA ACCTTTGATG
TGTCTGTACA AACTCATTCA ACTATTAATT CCTGAAACAA TTGTACCAGA AACTTAAGAT TTATGTGTGT GCTATAGCAG
CATCAATTCT ATTAAAATTC TAGATAATAA TTTGGTAAGG GGTTTGTTAA ATTGAGACAA AGTTGTTTCT TTTCAATCTC
AATGAGTGAG AGTACTACTG GCTAACAGCC AAGGAAGTGG ACATTTTGTT AGGTCACCTA GTTTAGGTGG ATGTTGTTGT
TAATGAATCA TGATTTGTCT TTGTATTTGT TTTTTTCTTT CATTTCTTGG ATTTGAAAAC AGTGCTTCAT GTGATAGATA
CTAATGTGGC TTCTTCTTAT TGGACAGGAA TTTCAGAAAT TCATACTTTG CAAGAGTTGG AGGGTTGACA ACAAATGAAT
TGAATGAATT GGAGGTTGAA TTTCTTTTCA TGATGGGTTT CAAATTGCAT GTGAATGTGA GTGTTTTTGA GAGCTATTGC
TGCCATTTGG AGAGGGAAGT CAGCATTGGA GGAGGTTATC ACATTGAGAG GACTCTAAGG TGTGCTGAAG AGATCAAAGC
AAGGCATACA GAGGAAAGGG GTTACACACA AATCACACGT GTGATGTTGT AGAATGCTTA GAGAGTTTTG CTGTTATAAT
TTTATTCTTT GTGTTTTTCC TGCAAGTCAA GAGGGCAGTT TATGTGTATA GATGAGTGTA AATTTATATA TTTTGTTTGG
GGATTGAGAA TTTAGAACAT AGGTAAGGCA GAAAAGAGTG ATGTACAAAT TTGCCTTGTT TTATCACAAG CAAACAGTGA
GTTTTAAGTG TGCAAATTTT C

>Vigan.09G112600.01
GGCACTCGTA TCTTAATAGT TTTCATTTTC ATGTTTTTTT ATTATCAAGC TTCCACCCAC TATCCCTCGT TCCAAACTCA
AAACCCTTCT TTTGGAGTTT TCTTTCTACA TAAATAAAAT GCCACTGAAT AATATTTTCA TCATGAAAAT AAAATAAACA
AACAAATCTC TATCTTTATT ATTCCCCTTC TTCCGATCCC AATTCCCCTT TATATATATA AAGCCTTCTT CCAAAAACCT
TCTTCATCAT CAACACCAAC ACAAAAACCC ATCATCATTT GCTGTTTAAT GCTCAACACC AAATACCCTT TTGGATTTGG
AGCTTATCAG ATCAATCCCC TTCAAAATCT TCCTCTTCTG AAGTTAAAAG AAGCAATTTT TTTCTCATGG CCTCTTCTTC
TTCTTCTCTT GCAATATCCC CAAGGAAGCT GCGCTATGAT CTTTATTCTT ATTCATACAA AGAAGATTCC AACACCCCAT
TAGTGATAAA TGTGCTGGCT TCACTCATTG AGAGGAGCAT GGCTAGGACA CAGAGGATTG TGAAGAACTG TTCAAGTGCT
TTGTCCAAAG CCATCAGCAC AAACATCTTC GATTGTAGAG AGATTCCTGA TATGACCATT CAATCCTATC TAGAGAGAAT
TTTCAGGTAC ACTAGAGCAG GACCATCTGT GTATGTTGTT GCCTATGTCT ACATTGACCG CTTCTGCCAA AACAATCCAG
GGTTTAGGAT CAATGCCAGA AATGTGCACA GACTTCTGAT AACAACTATC ATGGTGGCTT CTAAGTATGT GGAAGATATG
AATTTCAGAA ATTCATACTT TGCAAGAGTT GGAGGGTTGA CAACAAATGA ATTGAATGAA TTGGAGGTTG AATTTCTTTT
CATGATGGGT TTCAAATTGC ATGTGAATGT GAGTGTTTTT GAGAGCTATT GCTGCCATTT GGAGAGGGAA GTCAGCATTG
GAGGAGGTTA TCACATTGAG AGGACTCTAA GGTGTGCTGA AGAGATCAAA GCAAGGCATA CAGAGGAAAG GGGTTACACA
CAAATCACAC GTGTGATGTT GTAGAATGCT TAGAGAGTTT TGCTGTTATA ATTTTATTCT TTGTGTTTTT CCTGCAAGTC
AAGAGGGCAG TTTATGTGTA TAGATGAGTG TAAATTTATA TATTTTGTTT GGGGATTGAG AATTTAGAAC ATAGGTAAGG
CAGAAAAGAG TGATGTACAA ATTTGCCTTG TTTTATCACA AGCAAACAGT GAGTTTTAAG TGTGCAAATT TTC

>Vigan.09G112600.01
ATGGCCTCTT CTTCTTCTTC TCTTGCAATA TCCCCAAGGA AGCTGCGCTA TGATCTTTAT TCTTATTCAT ACAAAGAAGA
TTCCAACACC CCATTAGTGA TAAATGTGCT GGCTTCACTC ATTGAGAGGA GCATGGCTAG GACACAGAGG ATTGTGAAGA
ACTGTTCAAG TGCTTTGTCC AAAGCCATCA GCACAAACAT CTTCGATTGT AGAGAGATTC CTGATATGAC CATTCAATCC
TATCTAGAGA GAATTTTCAG GTACACTAGA GCAGGACCAT CTGTGTATGT TGTTGCCTAT GTCTACATTG ACCGCTTCTG
CCAAAACAAT CCAGGGTTTA GGATCAATGC CAGAAATGTG CACAGACTTC TGATAACAAC TATCATGGTG GCTTCTAAGT
ATGTGGAAGA TATGAATTTC AGAAATTCAT ACTTTGCAAG AGTTGGAGGG TTGACAACAA ATGAATTGAA TGAATTGGAG
GTTGAATTTC TTTTCATGAT GGGTTTCAAA TTGCATGTGA ATGTGAGTGT TTTTGAGAGC TATTGCTGCC ATTTGGAGAG
GGAAGTCAGC ATTGGAGGAG GTTATCACAT TGAGAGGACT CTAAGGTGTG CTGAAGAGAT CAAAGCAAGG CATACAGAGG
AAAGGGGTTA CACACAAATC ACACGTGTGA TGTTGTAG

>Vigan.09G112600.01
MASSSSSLAI SPRKLRYDLY SYSYKEDSNT PLVINVLASL IERSMARTQR IVKNCSSALS KAISTNIFDC REIPDMTIQS
YLERIFRYTR AGPSVYVVAY VYIDRFCQNN PGFRINARNV HRLLITTIMV ASKYVEDMNF RNSYFARVGG LTTNELNELE
VEFLFMMGFK LHVNVSVFES YCCHLEREVS IGGGYHIERT LRCAEEIKAR HTEERGYTQI TRVML*