GBrowse Details

Vigan.09G084900.01

Basic Information:
Name: Vigan.09G084900.01
Multiple alignment
Variant Information
Position: Chr09:11962637..11963937 (+ strand)
Length: 1301
Functional Information:
Description: Similar to Em protein. [Q41685, Vigna radiata var. radiata]
InterPro: Stress induced protein (IPR000389)
Small hydrophilic plant seed protein, conserved site (IPR022377)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1485.89,0.00,0.35,11.89,6.26,30.39,0 .14,6.35
Arabidopsis thaliana homolog: AT2G40170.1
Structure :
Position: Chr09:11962637..11963030 (+ strand)
Length: 394
Type: five_prime_UTR
Position: Chr09:11963031..11963148 (+ strand)
Length: 118
Type: CDS
Position: Chr09:11963388..11963569 (+ strand)
Length: 182
Type: CDS
Position: Chr09:11963570..11963937 (+ strand)
Length: 368
Type: three_prime_UTR

>Vigan.09G084900.01 class=Sequence position=Chr09:11962637..11963937 (+ strand)
TGGTTGAATT TGCAATTGCA TGGGAGCTAA AGTAACTCTA GAATCAACCA AACAGTGAAA AAAAAAAGCT AGAGTTTCAC
CATTTGATAC GTGTCATTTG AGAAGCTACG TATGCATGCG TGTCTTCCTT CTCCTTCAGC CACGTGTGTG CCGCACGTGT
CAATGCATGG CCACACCTTG TTTTCCATTT TCACCTGTTG TCAGCTTCTG GTTTTTCCCT CTGATAGCAA TGCATGGACA
TGTGCAACGA AACATAAACT ATATCTCACA TTAGAATAGC GTAGCTCCCT ATATAAACCC TCAACCCTAT CTGTTCTTGT
CACATAGCTT CCAAAACAAA CCTAGTTAAG GATAGAATCG CGTAGTGAGA AAGAATCTGT GCAAGAGTGA GAAAATGACA
AGTCGTCAGC AGAACAAACA AGAGCTTGAT GAGAGAGCAA GGCAGGGAGA GACTGTTGTT CCCGGTGGCA CTGGTGGCAA
GAGCGTTGAG GCTCAGCAAC ACCTTGCTGA AGGTTTATAA TCAATTCATA CAGACATTAT ACATTCTTCA TCTTTTTCAT
ACATGCATAA GAAAAAACAT CACTTTCATC ACAAGTCCAC AACTACTAAT GATACTTATC CTTGTTTTTC ATCACCTTTT
CCATATCATT AATTTCAAAC ACATTTATAT TTCTTACTGG TGAAGCTTTT TCTGCATAAC AAAATTTGAG TTTGGATTAT
GGTGTTTGTT TATTTGTGAT GAATATCATA GGAAGAAGCA AGGGAGGGAA AACAAGGAAG GAACAACTAG GGACAGAAGG
GTACCAAGAA ATGGGACGCA AGGGTGGGTT GAGCACCATG GATAAATCAG GAGAAGAACG TGCTAGAGAG GAAGGCATTG
AAATTGATGA ATCCAAGTTC AGGACTTCTT CCAATAACAA CAACGACATG TAACAGACAC ACACACATAA AAAGGTTTTA
CAACAACCTT CGTGTGTGTT CTTATGCTAG CTTCAATGTG AGTTTCGAGT CTTCTCTAGG GAGAATAGAA TAGATTATAA
AGTGTTGTAG TAGGTCAAGG TGTCATGTGT GTCCTGAAAT AAATTAGCTA GCAAGTATGA TGTTTTAGTA TTTTAGGTTG
TTTTAGGTTT CCTTGTACTC GTGTCTCTCT TTTGGGTTGT AAGTGATGAG TGAGGTATAT GTGCCTCCCT TTCACAAGTG
TTGACCAAGT TAATGGAATG TATATTAACT ACATGTTATA TTGTCATGAT CCCTTTAGTA ACTAAACTTT TATAAATGAA
ACTATAATAA AATATTGGCC C

>Vigan.09G084900.01
TGGTTGAATT TGCAATTGCA TGGGAGCTAA AGTAACTCTA GAATCAACCA AACAGTGAAA AAAAAAAGCT AGAGTTTCAC
CATTTGATAC GTGTCATTTG AGAAGCTACG TATGCATGCG TGTCTTCCTT CTCCTTCAGC CACGTGTGTG CCGCACGTGT
CAATGCATGG CCACACCTTG TTTTCCATTT TCACCTGTTG TCAGCTTCTG GTTTTTCCCT CTGATAGCAA TGCATGGACA
TGTGCAACGA AACATAAACT ATATCTCACA TTAGAATAGC GTAGCTCCCT ATATAAACCC TCAACCCTAT CTGTTCTTGT
CACATAGCTT CCAAAACAAA CCTAGTTAAG GATAGAATCG CGTAGTGAGA AAGAATCTGT GCAAGAGTGA GAAAATGACA
AGTCGTCAGC AGAACAAACA AGAGCTTGAT GAGAGAGCAA GGCAGGGAGA GACTGTTGTT CCCGGTGGCA CTGGTGGCAA
GAGCGTTGAG GCTCAGCAAC ACCTTGCTGA AGGAAGAAGC AAGGGAGGGA AAACAAGGAA GGAACAACTA GGGACAGAAG
GGTACCAAGA AATGGGACGC AAGGGTGGGT TGAGCACCAT GGATAAATCA GGAGAAGAAC GTGCTAGAGA GGAAGGCATT
GAAATTGATG AATCCAAGTT CAGGACTTCT TCCAATAACA ACAACGACAT GTAACAGACA CACACACATA AAAAGGTTTT
ACAACAACCT TCGTGTGTGT TCTTATGCTA GCTTCAATGT GAGTTTCGAG TCTTCTCTAG GGAGAATAGA ATAGATTATA
AAGTGTTGTA GTAGGTCAAG GTGTCATGTG TGTCCTGAAA TAAATTAGCT AGCAAGTATG ATGTTTTAGT ATTTTAGGTT
GTTTTAGGTT TCCTTGTACT CGTGTCTCTC TTTTGGGTTG TAAGTGATGA GTGAGGTATA TGTGCCTCCC TTTCACAAGT
GTTGACCAAG TTAATGGAAT GTATATTAAC TACATGTTAT ATTGTCATGA TCCCTTTAGT AACTAAACTT TTATAAATGA
AACTATAATA AAATATTGGC CC

>Vigan.09G084900.01
ATGACAAGTC GTCAGCAGAA CAAACAAGAG CTTGATGAGA GAGCAAGGCA GGGAGAGACT GTTGTTCCCG GTGGCACTGG
TGGCAAGAGC GTTGAGGCTC AGCAACACCT TGCTGAAGGA AGAAGCAAGG GAGGGAAAAC AAGGAAGGAA CAACTAGGGA
CAGAAGGGTA CCAAGAAATG GGACGCAAGG GTGGGTTGAG CACCATGGAT AAATCAGGAG AAGAACGTGC TAGAGAGGAA
GGCATTGAAA TTGATGAATC CAAGTTCAGG ACTTCTTCCA ATAACAACAA CGACATGTAA 

>Vigan.09G084900.01
MTSRQQNKQE LDERARQGET VVPGGTGGKS VEAQQHLAEG RSKGGKTRKE QLGTEGYQEM GRKGGLSTMD KSGEERAREE
GIEIDESKFR TSSNNNNDM*