GBrowse Details

Vigan.09G083600.01

Basic Information:
Name: Vigan.09G083600.01
Multiple alignment
Variant Information
Position: Chr09:11818430..11822164 (- strand)
Length: 3735
Functional Information:
Description: Similar to Chloroplast omega-3 fatty acid desaturase. [B6CI32, Vigna unguiculata]
GO: Biological Process: lipid metabolic process (GO:0006629)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water (GO:0016717)
InterPro: Fatty acid desaturase, type 1 (IPR005804)
Protein of unknown function DUF3474 (IPR021863)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.20,0.80,24.43,144.04,5.66,20.94,3. 08,67.69
Arabidopsis thaliana homolog: AT2G29980.1, AT3G11170.1, AT5G05580.1
Structure :
Position: Chr09:11818430..11819011 (- strand)
Length: 582
Type: three_prime_UTR
Position: Chr09:11819012..11819197 (- strand)
Length: 186
Type: CDS
Position: Chr09:11819296..11819433 (- strand)
Length: 138
Type: CDS
Position: Chr09:11819850..11819930 (- strand)
Length: 81
Type: CDS
Position: Chr09:11820036..11820221 (- strand)
Length: 186
Type: CDS
Position: Chr09:11820320..11820412 (- strand)
Length: 93
Type: CDS
Position: Chr09:11820518..11820584 (- strand)
Length: 67
Type: CDS
Position: Chr09:11820702..11820791 (- strand)
Length: 90
Type: CDS
Position: Chr09:11820937..11821451 (- strand)
Length: 515
Type: CDS
Position: Chr09:11821452..11822164 (- strand)
Length: 713
Type: five_prime_UTR

>Vigan.09G083600.01 class=Sequence position=Chr09:11818430..11822164 (- strand)
ACTCATTTAA TTAATTTAAT GATATCAATA TGTTTTCTCA TCAAAATTTC AAAAATCTTT CTGTTATTTC TTCACTATTA
TCTGGTGTTG GATACAGTGA TGCGTAATAA GAATCCACCA AAAGCAAAGG CAAGAAAATA GGAGTCTCCA CTTCCCAAAT
TGCACCAAAG GGGGTCAAAA TCCGAACGGA AAGGCAAGGA AGAGTTATTG GAATTTCTTT CCACTGAAGA ATGTGAACCC
AACATAAGAA CGTGGAATCT AAAAGTGATC ACTAGAGAGA AAACATGTCC AAATTCCTAA AACAACAGCA TTATATTTGA
GATAAGAATA ATCTCTTAAG GTAATTACAT AAACCAGAAC CCCACCATTT GCATCTTTGC CTTTCGATAC CCTTTTGTTA
AAGCCAAGAC CTTTCCCCTC TCAGATTTGT GAAGGAGGTG GGGGAGGGGA TAGAACAGGG AGAAACCTAG GAGAGAGAAA
GTTAAAGCAC AAATGTGAGG CTCTTGTTGA AGCACACAAG TGTTTTGTTT TTCTCAAATT TGTGTTTTGT TTGTTAGAGT
TGTAGATTCA GTTGCATGCA TATATTTTGG TTCACACATC TCTCTCTCTC TCTCCCTTAT AACTTTACCT TTCTATCCTC
AGGGATTATG AAGTGGTAAG GAACTAATCA GCCACAGACC CAAAAACCAA CCAAAGCTTC CTCCTTTTCT CCAATGGCAA
CTTGGGTTTT ATCAGAATGT GGTTTAAGGC CTCTTCCTCC TGTATTTCCA CGGCCAACAA GGCCTATTGT GTGCCAAAAG
CCTTCAAAGT TTCGATTTTT TAGCACAAAT AAGGGAGTGG CAGATCTGAA GGTCCAACCA AGAGGGTTTA CAAGTTGCAA
CTACAGGGAG AGAAGGTGGG AATTGGGAGT GAGTGCACCA CTGAAGGTTG CCACCAGCGA GGGAGAAGAA GAAAGTGTCA
ATGGCGTTAA TGGGGTTGGA GAGGAATTAC CTGAATTTGA CCCTAGTGCA CCACCACCCT TCAAATTGGC AGATATCAGA
GCTGCCATTC CCAAACACTG CTGGGTGAAG GACCCTTGGA AGTCCATGAG TTATGTAGTG AGGGATGTCA TTGTGGTTTT
TGGGTTGGCT GCTGCTGCAG CTTATCTCAA CAACTGGATA GTTTGGCCTC TCTACTGGGC TGCTCAGGGA ACCATGTTCT
GGGCCCTCTT TGTTCTTGGT CATGATTGGT AATAGCAATT TCGTGTTGAT ATCTCCATTT TTGTTTTACT AATGCAGATC
TAGATTTAAT TGTTGATTGG CCTTTTTGGG GTGGCATAGT TGGATTTTAG AAGCTTGTTG TAATAACCAT GGTTGGTGTT
TTGGATCTTT CAGTGGTCAC GGAAGCTTTT CAAACAATCC CAAGCTGAAC AGTGTTGCTG GGCACTTGCT GCATTCATCA
ATTCTAGTTC CATATCATGG ATGGTATGCT TGATGAGCTG TTCTTCTAGT CCCCTTTTTA TCTTTTGTTG TTTGCTTATA
TCCTAAAATG CATCATTTTA AGCCTATGTT TTGAAACTGA TAGTTTCATG AATTATACAG GAGAATCAGT CATAGAACAC
ATCACCAAAA TCATGGCCAT GTTGAAAATG ATGAATCCTG GCACCCGGTA AGATGATCAT CTTTGTTGGG GGTTCTTATG
GGAAATCTGC TTTTGGCTCC AATAGTTTAT ATTAAAGGGT CTAAGTCAAA ATATTCAATG TCAATCTTGC AGTTGCCAGA
GAAAATTTTC AACAGCATGG ACAATGTAAC CCGTACTTTA AGATTTAAAG TACCTTTTCC ATTGCTTGCG TATCCCATCT
ACCTTGTAAG TTGCAGTACC TAACAGTTTC AGCATAACTT TAAACCTTTA TTGTTAGTGG TTCTTGTGTG GGAATTCACC
TTTGTTATGA TCTTTCAATT CAGTGGAATA GGAGTCCTGG GAAGACTGGT TCTCATTTTG ATCCAAACAG TGATTTGTTT
GTCCCAAGTG AGAGAAAAGA TATTATCACT TCAACAATTT GTTGGACAGC TATGGCTGCC TTGCTTGTAG GTTTGGGATT
TGTGATGGGT CCAGTTCAAT TGCTTAAGCT TTATGGCATT CCCTATGTGG TAAATTCCTT ATCTTTTTCT TAACTATGAA
CTAGAAACTT CATTCAGAAC AAGTCTTTCT TTCTGACTAA CAACCAAATC CTAATTTGAC TTCTATAATT GCAGCTTTTT
GTTATGTGGT TGGATTTGGT CACTTATTTG CATCACCATG GCCACGAAGA CAAATTACCT TGGTATCGTG GAGAGGTATC
ATTTCTTTCC TTTTTCTTTC ATTTTCAAGA AAATGTTTGA TCAACTTGGT CATTTATTTC ACCTTTTTTA GAATCAAGGA
CAAGACTTAG ATGTAATAGT TCCTTATGTA TTTTGATTCT GGTATGCTAT CCAGTTAAAG TTGAAATTTT ACCTTGTTCA
TCTACATAGT ATATGTTTGC ATCAAAGGTT ACCACAGGAT TCCAAGTTGG AAACCTCTAA TTTTGATTTA AGAACACCAA
AAACACATAA GAAGTTGTGT CTATGTTTTG TTCATAGATA AACTAAAAAG ATTATAGAGT TATAGTATAG TCTTCTTCAG
CTTGCTTCTT CAATGTTTGT GATGACTTGG AATTGGAAGT GACTTAAATT CAATCTTTCT TCTTAGCTTC ATTCTTCACT
GTGTTGAACA GGAATGGAGC TACCTTAGGG GTGGCCTTAC AACTATTGAT CGTGACTATG GATGGATTAA TAACATTCAC
CATGACATTG GAACCCATGT CATTCATCAC CTTTTCCCTC AAATACCACA CTATCACTTA ATAGAAGCAG TGAGTGTCCC
TCTGCTGCAC TTCTTTTGAT GAATTAAAGG AATGGTAATT TTATACTAAC TGCATACTCT TTGGAATTTG TCTTTGTTCC
ATTATAGACT GAGGCAGCTA AACCAGTTCT TGGTCAATAT TACCGGGAGC CAAAGAAGTC CAGCCCTCTT CCATTTTACC
TCATTGGAGA ATTGCTAACA AGCATGAAGA AAGACCATTT TGTCAGTGAC ACTGGGGATA TTGTGTACTA TCAAACAGAT
CCTACAATTA GTAACTCATC CACATCACAG TGAAACTTCC ATTTTTCCCT CTTGAAGACA GAGAGAGGCC ACATAATATG
TTGCTGCATA TGACACAATT TCTGAACTCT GAAGATTTTT TCTGAGCTTA TGCTCTCTGT GAGTCTAGTT GAATTTCTGA
TGAGGGAATG AATGAATGCA TGACTGATTT GATTGTGACT GCATGGTTTT AAGCATGATC AGGGTGCATG TGTTAGGTGT
TCTCCTTGAA GAACAAGGAA TCTGTAAATT GCAAATTCTT GATGAAGGGT GTGCTGTCTT CATCGATTTA ATTAATATTT
TTTGCTCAAA CTCAAACACC AATGATGAAT GATAATTGAA TAGAATTGTA TCAACAGACG TCACTTTTGC TTATTGCCTT
CCTTTTGTAT TCCTCTTCAT TTAGTGGTTG TTGATATTTC TTTAGATAGT GTCTCAAATC ATGTCATATT GTAATGTCCC
TTATTCAAGG TTCTTTTATT TTGGTCCAAT TATATATATG TGATATTTTA ATAAAGTTGA GTTTGAGAAT TGTATGGGGG
CAAAAGTCTC TGAAACTGAA AGAGATTAAA CGAGATGAAG ACAAAGAAAT GAGAG

>Vigan.09G083600.01
ACTCATTTAA TTAATTTAAT GATATCAATA TGTTTTCTCA TCAAAATTTC AAAAATCTTT CTGTTATTTC TTCACTATTA
TCTGGTGTTG GATACAGTGA TGCGTAATAA GAATCCACCA AAAGCAAAGG CAAGAAAATA GGAGTCTCCA CTTCCCAAAT
TGCACCAAAG GGGGTCAAAA TCCGAACGGA AAGGCAAGGA AGAGTTATTG GAATTTCTTT CCACTGAAGA ATGTGAACCC
AACATAAGAA CGTGGAATCT AAAAGTGATC ACTAGAGAGA AAACATGTCC AAATTCCTAA AACAACAGCA TTATATTTGA
GATAAGAATA ATCTCTTAAG GTAATTACAT AAACCAGAAC CCCACCATTT GCATCTTTGC CTTTCGATAC CCTTTTGTTA
AAGCCAAGAC CTTTCCCCTC TCAGATTTGT GAAGGAGGTG GGGGAGGGGA TAGAACAGGG AGAAACCTAG GAGAGAGAAA
GTTAAAGCAC AAATGTGAGG CTCTTGTTGA AGCACACAAG TGTTTTGTTT TTCTCAAATT TGTGTTTTGT TTGTTAGAGT
TGTAGATTCA GTTGCATGCA TATATTTTGG TTCACACATC TCTCTCTCTC TCTCCCTTAT AACTTTACCT TTCTATCCTC
AGGGATTATG AAGTGGTAAG GAACTAATCA GCCACAGACC CAAAAACCAA CCAAAGCTTC CTCCTTTTCT CCAATGGCAA
CTTGGGTTTT ATCAGAATGT GGTTTAAGGC CTCTTCCTCC TGTATTTCCA CGGCCAACAA GGCCTATTGT GTGCCAAAAG
CCTTCAAAGT TTCGATTTTT TAGCACAAAT AAGGGAGTGG CAGATCTGAA GGTCCAACCA AGAGGGTTTA CAAGTTGCAA
CTACAGGGAG AGAAGGTGGG AATTGGGAGT GAGTGCACCA CTGAAGGTTG CCACCAGCGA GGGAGAAGAA GAAAGTGTCA
ATGGCGTTAA TGGGGTTGGA GAGGAATTAC CTGAATTTGA CCCTAGTGCA CCACCACCCT TCAAATTGGC AGATATCAGA
GCTGCCATTC CCAAACACTG CTGGGTGAAG GACCCTTGGA AGTCCATGAG TTATGTAGTG AGGGATGTCA TTGTGGTTTT
TGGGTTGGCT GCTGCTGCAG CTTATCTCAA CAACTGGATA GTTTGGCCTC TCTACTGGGC TGCTCAGGGA ACCATGTTCT
GGGCCCTCTT TGTTCTTGGT CATGATTGTG GTCACGGAAG CTTTTCAAAC AATCCCAAGC TGAACAGTGT TGCTGGGCAC
TTGCTGCATT CATCAATTCT AGTTCCATAT CATGGATGGA GAATCAGTCA TAGAACACAT CACCAAAATC ATGGCCATGT
TGAAAATGAT GAATCCTGGC ACCCGTTGCC AGAGAAAATT TTCAACAGCA TGGACAATGT AACCCGTACT TTAAGATTTA
AAGTACCTTT TCCATTGCTT GCGTATCCCA TCTACCTTTG GAATAGGAGT CCTGGGAAGA CTGGTTCTCA TTTTGATCCA
AACAGTGATT TGTTTGTCCC AAGTGAGAGA AAAGATATTA TCACTTCAAC AATTTGTTGG ACAGCTATGG CTGCCTTGCT
TGTAGGTTTG GGATTTGTGA TGGGTCCAGT TCAATTGCTT AAGCTTTATG GCATTCCCTA TGTGCTTTTT GTTATGTGGT
TGGATTTGGT CACTTATTTG CATCACCATG GCCACGAAGA CAAATTACCT TGGTATCGTG GAGAGGAATG GAGCTACCTT
AGGGGTGGCC TTACAACTAT TGATCGTGAC TATGGATGGA TTAATAACAT TCACCATGAC ATTGGAACCC ATGTCATTCA
TCACCTTTTC CCTCAAATAC CACACTATCA CTTAATAGAA GCAACTGAGG CAGCTAAACC AGTTCTTGGT CAATATTACC
GGGAGCCAAA GAAGTCCAGC CCTCTTCCAT TTTACCTCAT TGGAGAATTG CTAACAAGCA TGAAGAAAGA CCATTTTGTC
AGTGACACTG GGGATATTGT GTACTATCAA ACAGATCCTA CAATTAGTAA CTCATCCACA TCACAGTGAA ACTTCCATTT
TTCCCTCTTG AAGACAGAGA GAGGCCACAT AATATGTTGC TGCATATGAC ACAATTTCTG AACTCTGAAG ATTTTTTCTG
AGCTTATGCT CTCTGTGAGT CTAGTTGAAT TTCTGATGAG GGAATGAATG AATGCATGAC TGATTTGATT GTGACTGCAT
GGTTTTAAGC ATGATCAGGG TGCATGTGTT AGGTGTTCTC CTTGAAGAAC AAGGAATCTG TAAATTGCAA ATTCTTGATG
AAGGGTGTGC TGTCTTCATC GATTTAATTA ATATTTTTTG CTCAAACTCA AACACCAATG ATGAATGATA ATTGAATAGA
ATTGTATCAA CAGACGTCAC TTTTGCTTAT TGCCTTCCTT TTGTATTCCT CTTCATTTAG TGGTTGTTGA TATTTCTTTA
GATAGTGTCT CAAATCATGT CATATTGTAA TGTCCCTTAT TCAAGGTTCT TTTATTTTGG TCCAATTATA TATATGTGAT
ATTTTAATAA AGTTGAGTTT GAGAATTGTA TGGGGGCAAA AGTCTCTGAA ACTGAAAGAG ATTAAACGAG ATGAAGACAA
AGAAATGAGA G

>Vigan.09G083600.01
ATGGCAACTT GGGTTTTATC AGAATGTGGT TTAAGGCCTC TTCCTCCTGT ATTTCCACGG CCAACAAGGC CTATTGTGTG
CCAAAAGCCT TCAAAGTTTC GATTTTTTAG CACAAATAAG GGAGTGGCAG ATCTGAAGGT CCAACCAAGA GGGTTTACAA
GTTGCAACTA CAGGGAGAGA AGGTGGGAAT TGGGAGTGAG TGCACCACTG AAGGTTGCCA CCAGCGAGGG AGAAGAAGAA
AGTGTCAATG GCGTTAATGG GGTTGGAGAG GAATTACCTG AATTTGACCC TAGTGCACCA CCACCCTTCA AATTGGCAGA
TATCAGAGCT GCCATTCCCA AACACTGCTG GGTGAAGGAC CCTTGGAAGT CCATGAGTTA TGTAGTGAGG GATGTCATTG
TGGTTTTTGG GTTGGCTGCT GCTGCAGCTT ATCTCAACAA CTGGATAGTT TGGCCTCTCT ACTGGGCTGC TCAGGGAACC
ATGTTCTGGG CCCTCTTTGT TCTTGGTCAT GATTGTGGTC ACGGAAGCTT TTCAAACAAT CCCAAGCTGA ACAGTGTTGC
TGGGCACTTG CTGCATTCAT CAATTCTAGT TCCATATCAT GGATGGAGAA TCAGTCATAG AACACATCAC CAAAATCATG
GCCATGTTGA AAATGATGAA TCCTGGCACC CGTTGCCAGA GAAAATTTTC AACAGCATGG ACAATGTAAC CCGTACTTTA
AGATTTAAAG TACCTTTTCC ATTGCTTGCG TATCCCATCT ACCTTTGGAA TAGGAGTCCT GGGAAGACTG GTTCTCATTT
TGATCCAAAC AGTGATTTGT TTGTCCCAAG TGAGAGAAAA GATATTATCA CTTCAACAAT TTGTTGGACA GCTATGGCTG
CCTTGCTTGT AGGTTTGGGA TTTGTGATGG GTCCAGTTCA ATTGCTTAAG CTTTATGGCA TTCCCTATGT GCTTTTTGTT
ATGTGGTTGG ATTTGGTCAC TTATTTGCAT CACCATGGCC ACGAAGACAA ATTACCTTGG TATCGTGGAG AGGAATGGAG
CTACCTTAGG GGTGGCCTTA CAACTATTGA TCGTGACTAT GGATGGATTA ATAACATTCA CCATGACATT GGAACCCATG
TCATTCATCA CCTTTTCCCT CAAATACCAC ACTATCACTT AATAGAAGCA ACTGAGGCAG CTAAACCAGT TCTTGGTCAA
TATTACCGGG AGCCAAAGAA GTCCAGCCCT CTTCCATTTT ACCTCATTGG AGAATTGCTA ACAAGCATGA AGAAAGACCA
TTTTGTCAGT GACACTGGGG ATATTGTGTA CTATCAAACA GATCCTACAA TTAGTAACTC ATCCACATCA CAGTGA

>Vigan.09G083600.01
MATWVLSECG LRPLPPVFPR PTRPIVCQKP SKFRFFSTNK GVADLKVQPR GFTSCNYRER RWELGVSAPL KVATSEGEEE
SVNGVNGVGE ELPEFDPSAP PPFKLADIRA AIPKHCWVKD PWKSMSYVVR DVIVVFGLAA AAAYLNNWIV WPLYWAAQGT
MFWALFVLGH DCGHGSFSNN PKLNSVAGHL LHSSILVPYH GWRISHRTHH QNHGHVENDE SWHPLPEKIF NSMDNVTRTL
RFKVPFPLLA YPIYLWNRSP GKTGSHFDPN SDLFVPSERK DIITSTICWT AMAALLVGLG FVMGPVQLLK LYGIPYVLFV
MWLDLVTYLH HHGHEDKLPW YRGEEWSYLR GGLTTIDRDY GWINNIHHDI GTHVIHHLFP QIPHYHLIEA TEAAKPVLGQ
YYREPKKSSP LPFYLIGELL TSMKKDHFVS DTGDIVYYQT DPTISNSSTS Q*