GBrowse Details

Vigan.09G079000.01

Basic Information:
Name: Vigan.09G079000.01
Multiple alignment
Variant Information
Position: Chr09:11079160..11082274 (+ strand)
Length: 3115
Functional Information:
Description: Similar to High mobility group B protein 1. [T2DME1, Phaseolus vulgaris]
InterPro: High mobility group box domain (IPR009071)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:70.90,83.95,89.15,203.84,128.67,103. 77,143.82,105.23
Arabidopsis thaliana homolog: AT3G51880.2
Automatic updates:
Name: NM_001361497 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative high mobility group protein B1 protein (LOC100499704), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:11079160..11080021 (+ strand)
Length: 862
Type: five_prime_UTR
Position: Chr09:11080022..11080089 (+ strand)
Length: 68
Type: CDS
Position: Chr09:11080300..11080428 (+ strand)
Length: 129
Type: CDS
Position: Chr09:11080503..11080560 (+ strand)
Length: 58
Type: CDS
Position: Chr09:11080653..11080697 (+ strand)
Length: 45
Type: CDS
Position: Chr09:11080955..11081035 (+ strand)
Length: 81
Type: CDS
Position: Chr09:11081120..11081197 (+ strand)
Length: 78
Type: CDS
Position: Chr09:11081928..11081990 (+ strand)
Length: 63
Type: CDS
Position: Chr09:11081991..11082274 (+ strand)
Length: 284
Type: three_prime_UTR

>Vigan.09G079000.01 class=Sequence position=Chr09:11079160..11082274 (+ strand)
AGGTATTCCT CTCCTTCAAT AAAATCTTCT TTTATTTTAT TTAGGGTTGA ATTTATCGGC TTCGATTTCT GGTTGGAAGA
TTTGCAAAGT TCAAACTTTG CATGCGGTTT TATTTTTTGT CTTTTTTTGT GGATTGTGAT TTTGAAGAGT TTGAAAATAA
AGGTTTAGTC AGGGGAGTAT ATTGCATGAA CAGAGGCAAA AGGGTATTCG CCGTTTTTAG GCTTTTCAAT ATTTTCTCTG
TATGTAATTT TGTTTACTGT GTTCTCGAAG CATGCCAAGT GAAGGAAATC ATGTACTATT ATAATACATA ACTTGAGGAT
CTTGCATGTG CTTCCATCTT GTTGATTGAT ATATCATTTT TTTTATGATT AACTCTGTCT GATCTCTGAA ATTTATAGGA
AAAGACAATT TCATGTGCAT GTGTGATAAT CTTTTTGTTG TTACAAAACA CATGCATAAA TTTCTCTAAG ATGGACTACT
AGGTAAATAT GCATGTGCGA TTAACATCCT TTAACTCTAT AGTTTGTGTG TGAATTGTGA TCTTGCTACA AATATATTAT
TTTATGAGTT AACCCTATAG TGTGTGGCGG TGTGTGAAAC TATGTTGTTG CTACAAAAGC TCAAACACAT GAATTTCTAT
ATGGTGGAAA CCTTGGTAGA TATTTAACAT TTTATAAGCA TCATTTAATC CCATTATAGG GTTTATTTAT TTACACTGAT
TTTTGTGGGG TCCTGTTTTA TGTGTTGCTA ATTTTGTTAA TTATCTGCTT GAAGTTTTAT CTGTCTCTTG TCCCTTCTTA
TTGGTAATTT TATCATTCCC TTATTTGATT GCTGGAGATT TAGTGGTACA GGAACTTAAA CAATGAAGAA TGCCAAGGGC
AAGGGGGCAG TGAAGGTCTC AAAAGAAGCA CTGAAGCCTG TTGATGACCG GTTAGTTCTT GTATCATTAC AGTGAAATTA
GTTGAGGCAT TCTGATTTTT CATATAACTA TTTGTCTTCT TGTCCATCAG GGTGTTGACT TTCTGGGGCA TTGATTTATA
TATAAACAGT TTATTAATGT CTGATTATGC ATACTTGATG GTTCATCCAG CTGTGATAGG AATAGTGTAG TGATAGAACA
TATATCTCTA TTGTTTTCAG AAAGGTTGGA AAGAGGAAGG CTCCTAGTAA GCCTGACAAG GGCAGTGCAC CAAAGGCAAA
GAAGGAGAAG AAGGCCAAGA AAGACCCAAA CAAGCCTAAA AGACCACCCA GTGCTTTCTT TGTGTTCCTG TATGTATCTG
TCTTTACTCT TTCTTTTTTG TGTTACTTAG AAAAATATTC CAATCATTCC TGGTCTGTGA TAGTGAGGAG TTCAGGCAGA
CCTTTAAGGC TGAGAATCCA AATGTGAAGG CTGTATCTGC TGTAAGTAGC TTGTTAAATT GCTTCACGTT CAATTATGAT
ATACCCTTTT TTGAATAAAC ATCTAAATTG TTTGCTGCAC TCTTTCATTG AAGGTTGGGA AAGCTGGAGG AGAGAAATGG
AAATCTTTAT CCAGTGCTGT AAGCTGTTAA ATTGTGATAA ATAATGCACA TTTTTTCACT TTTTTTTTAT ATTGATTTAC
GCATCTTTGT CGTGATTTTA GATGCATTCA GATGCAAGTT TATGTTTAAG TAGATATAGT TCGTTATTTG TAAGCTAATG
ACGCTTGAAT TGAATTCGAG TATATCAATT CACATGCACT AAATGAACTC ATTCTATTGA AAAAGGGATT TATTTTTTTA
AAATTGATGT TGACTCCTCT TTTTCGAATG AAAAGGAAAA AGCTCCATAT GAAGCCAAGG CTGCAAAAAG GAAAGCTGAG
TATGAAAAAC TCATGAAAGC TTATGATAAA AAGCAGGTGA GTAACCTGTG CTAGTTGTTC TGTTTTGTGT GGTGTTTTGG
TTGTCTTGCT TATATACTTT ATTTTCTATA ATGGTTACAG GCAAGCTCTG CAGATGATGA TGAATCAGAC AAGTCCAAAT
CTGAGGTGAA CGATGAAGAT GATGAAGCCA GTGCAGAGGT ATATATTTTC TGTGTACTTC TTGAACTGTG CATGATATGG
AGGTTGCACA TAATGAATGC TATCCATAAT TTCTGCAAAC GTTTTGTTCA AGATTTTAGT TCTAGAGGGT GAACATGAGA
GAAATAGAAA AAGGACTATG ATATGTTAAC AACTTTTTTT AACAATTTTT TGACAATAAA CTATGTGTCA CTATTTGATT
GGCTCGTATA TTTGAAATAA ACCAATCATG AGCTACTACG TAAGTGTTGT AAAAAAGTTG TAAAAAAAAA AAAGTTAAAA
AAACATTTTT CATAGAAAAA AGTTTTGGTC AAGGAGTAAA TGTAGTGAAT TTAGCATGTA TTTGCTTTCA CGTTGCAACA
TTCATTTCTC TCTTCCCAAG AAACTAAATG TGACTGATAA TAATCGGATT CATGATTAAC GGAGTTTGAA TGGTTTTGCA
AACGCACTCT TAATTTAATT ATTACCCAAG TTACTAACCC TTTTGACTTA CCAAGAGAAG TTTGTAAAAT ATGGACTTCA
AAGCGTGGAT GGTACCTTCT GATTTACATA CTGAGGTCTC TATAATGGTT TAGCTTCTCA ATAAACTGAG ATGAGGGGTT
CCTTATTGTA CAGGCGCACA TAGCATAAAT GCTAGTGCTG CCTTCTATGA TTTGTATTGT TTTGACAGGC TTAAAACCAG
TCCTTTCTGT CTCTCTTTTT TGATCCAATT GTTTTCATAT TTATACAGGA CCATCAAGAG GAGGAAGAGG AGGAAGACGA
TGAAGATGAG GAAGATGAGG ATGATGACTG AGATTGATGT TTAAAAACTT GGTTTATGAT GTTTTGTTGG TGAGGGTGGC
TATTATCTAT TCTGACTGTG CATACTAGGC CACTTTTTTT ATGTTTTGTG TTGGTAGAAA AGAATCTCTT CCTTTTGTTG
GCTCCTTAAA TTGCCTGCTA CTTGAGCTTC CCTCACTTAG CTATCGTACC TAAATTGCTC TGTGCATTGT AGCCTTACAT
GGGTTGCTTT AAGTAATATT AATTTCTTTC TGATCAATGC ATTGACATAA TAAATTAGTA TAAACTGAAT CATCG

>Vigan.09G079000.01
AGGTATTCCT CTCCTTCAAT AAAATCTTCT TTTATTTTAT TTAGGGTTGA ATTTATCGGC TTCGATTTCT GGTTGGAAGA
TTTGCAAAGT TCAAACTTTG CATGCGGTTT TATTTTTTGT CTTTTTTTGT GGATTGTGAT TTTGAAGAGT TTGAAAATAA
AGGTTTAGTC AGGGGAGTAT ATTGCATGAA CAGAGGCAAA AGGGTATTCG CCGTTTTTAG GCTTTTCAAT ATTTTCTCTG
TATGTAATTT TGTTTACTGT GTTCTCGAAG CATGCCAAGT GAAGGAAATC ATGTACTATT ATAATACATA ACTTGAGGAT
CTTGCATGTG CTTCCATCTT GTTGATTGAT ATATCATTTT TTTTATGATT AACTCTGTCT GATCTCTGAA ATTTATAGGA
AAAGACAATT TCATGTGCAT GTGTGATAAT CTTTTTGTTG TTACAAAACA CATGCATAAA TTTCTCTAAG ATGGACTACT
AGGTAAATAT GCATGTGCGA TTAACATCCT TTAACTCTAT AGTTTGTGTG TGAATTGTGA TCTTGCTACA AATATATTAT
TTTATGAGTT AACCCTATAG TGTGTGGCGG TGTGTGAAAC TATGTTGTTG CTACAAAAGC TCAAACACAT GAATTTCTAT
ATGGTGGAAA CCTTGGTAGA TATTTAACAT TTTATAAGCA TCATTTAATC CCATTATAGG GTTTATTTAT TTACACTGAT
TTTTGTGGGG TCCTGTTTTA TGTGTTGCTA ATTTTGTTAA TTATCTGCTT GAAGTTTTAT CTGTCTCTTG TCCCTTCTTA
TTGGTAATTT TATCATTCCC TTATTTGATT GCTGGAGATT TAGTGGTACA GGAACTTAAA CAATGAAGAA TGCCAAGGGC
AAGGGGGCAG TGAAGGTCTC AAAAGAAGCA CTGAAGCCTG TTGATGACCG AAAGGTTGGA AAGAGGAAGG CTCCTAGTAA
GCCTGACAAG GGCAGTGCAC CAAAGGCAAA GAAGGAGAAG AAGGCCAAGA AAGACCCAAA CAAGCCTAAA AGACCACCCA
GTGCTTTCTT TGTGTTCCTT GAGGAGTTCA GGCAGACCTT TAAGGCTGAG AATCCAAATG TGAAGGCTGT ATCTGCTGTT
GGGAAAGCTG GAGGAGAGAA ATGGAAATCT TTATCCAGTG CTGAAAAAGC TCCATATGAA GCCAAGGCTG CAAAAAGGAA
AGCTGAGTAT GAAAAACTCA TGAAAGCTTA TGATAAAAAG CAGGCAAGCT CTGCAGATGA TGATGAATCA GACAAGTCCA
AATCTGAGGT GAACGATGAA GATGATGAAG CCAGTGCAGA GGACCATCAA GAGGAGGAAG AGGAGGAAGA CGATGAAGAT
GAGGAAGATG AGGATGATGA CTGAGATTGA TGTTTAAAAA CTTGGTTTAT GATGTTTTGT TGGTGAGGGT GGCTATTATC
TATTCTGACT GTGCATACTA GGCCACTTTT TTTATGTTTT GTGTTGGTAG AAAAGAATCT CTTCCTTTTG TTGGCTCCTT
AAATTGCCTG CTACTTGAGC TTCCCTCACT TAGCTATCGT ACCTAAATTG CTCTGTGCAT TGTAGCCTTA CATGGGTTGC
TTTAAGTAAT ATTAATTTCT TTCTGATCAA TGCATTGACA TAATAAATTA GTATAAACTG AATCATCG

>Vigan.09G079000.01
ATGAAGAATG CCAAGGGCAA GGGGGCAGTG AAGGTCTCAA AAGAAGCACT GAAGCCTGTT GATGACCGAA AGGTTGGAAA
GAGGAAGGCT CCTAGTAAGC CTGACAAGGG CAGTGCACCA AAGGCAAAGA AGGAGAAGAA GGCCAAGAAA GACCCAAACA
AGCCTAAAAG ACCACCCAGT GCTTTCTTTG TGTTCCTTGA GGAGTTCAGG CAGACCTTTA AGGCTGAGAA TCCAAATGTG
AAGGCTGTAT CTGCTGTTGG GAAAGCTGGA GGAGAGAAAT GGAAATCTTT ATCCAGTGCT GAAAAAGCTC CATATGAAGC
CAAGGCTGCA AAAAGGAAAG CTGAGTATGA AAAACTCATG AAAGCTTATG ATAAAAAGCA GGCAAGCTCT GCAGATGATG
ATGAATCAGA CAAGTCCAAA TCTGAGGTGA ACGATGAAGA TGATGAAGCC AGTGCAGAGG ACCATCAAGA GGAGGAAGAG
GAGGAAGACG ATGAAGATGA GGAAGATGAG GATGATGACT GA

>Vigan.09G079000.01
MKNAKGKGAV KVSKEALKPV DDRKVGKRKA PSKPDKGSAP KAKKEKKAKK DPNKPKRPPS AFFVFLEEFR QTFKAENPNV
KAVSAVGKAG GEKWKSLSSA EKAPYEAKAA KRKAEYEKLM KAYDKKQASS ADDDESDKSK SEVNDEDDEA SAEDHQEEEE
EEDDEDEEDE DDD*