GBrowse Details

Vigan.09G034300.01

Basic Information:
Name: Vigan.09G034300.01
Multiple alignment
Variant Information
Position: Chr09:4007596..4011848 (+ strand)
Length: 4253
Functional Information:
Description: Similar to Uncharacterized protein. [G7LF25, Medicago truncatula]
GO: Biological Process: transcription, DNA-dependent (GO:0006351)
Biological Process: cellular metabolic process (GO:0044237)
Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: DNA-directed RNA polymerase activity (GO:0003899)
InterPro: RNA polymerase II, Rpb4 (IPR005574)
RNA polymerase II, Rpb4, core (IPR006590)
HRDC-like (IPR010997)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:98.84,44.89,69.17,65.58,90.90,71.07, 73.16,53.46
Arabidopsis thaliana homolog: AT5G09920.1
Automatic updates:
Name: NM_001251144 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527316 (LOC100527316), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251144 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max DNA-directed RNA polymerase II subunit (LOC100527316), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:4007596..4007729 (+ strand)
Length: 134
Type: five_prime_UTR
Position: Chr09:4007730..4007778 (+ strand)
Length: 49
Type: CDS
Position: Chr09:4009020..4009128 (+ strand)
Length: 109
Type: CDS
Position: Chr09:4009461..4009538 (+ strand)
Length: 78
Type: CDS
Position: Chr09:4009828..4009861 (+ strand)
Length: 34
Type: CDS
Position: Chr09:4010055..4010123 (+ strand)
Length: 69
Type: CDS
Position: Chr09:4011413..4011490 (+ strand)
Length: 78
Type: CDS
Position: Chr09:4011491..4011848 (+ strand)
Length: 358
Type: three_prime_UTR

>Vigan.09G034300.01 class=Sequence position=Chr09:4007596..4011848 (+ strand)
ATTCAAACAG AAAAGCTGAA TCCCTCGTTG TCATTCTTTT TTCGGTATTC CTCTTCACGC GCTCCCTCTC CTTCGTTCTT
CTACTCGCTG TTTCTGCATC TGTTTCGTCT CACATACCGG AAAGTCTCTG AAACATGTCT GGGGAAGAGG AAGAAAACGC
CGCAGAGCTC AAAATTGGAG ATGGTAATTA ATTTTTATTT ATTTACAAAT TGATTTGCTT ATTTGAATCG TTTTGCTAGA
AATCGATCTC TTGCCCTATA GAATCAGTGT GCTTTTCGCA TGGGGCTTGG GGTAGTGTTT TGCAATCTGT TACAACTTTT
CAAACCAACC CTTTGTTGTA ATTTGTAAAC TTTTACTTTG TGCTTCGTAA AATTTTCTGT TGAATTGGTG GGATGTTTGA
TGAGGTATAG CATTGTGTTA CAACACATAT ATGAATTGGG TTAACCCTAA ACCCCAGATT ACAAGCGTCA GTTGTTTTGG
TGTGTAACTT TACGAAATTC TTAGTTTAGT CCCTGATTTT AGGAAACAGG GTTGACGAGA GTGAAAAAAG GAAATAGAAA
AGGGCTGAAG TGAATGCCTT TTTGACCCAA TTGTGGGTTG CGTGAAATTA GGGACTGAAG TGATGGACGC ATACAATTTA
AGTATTAAAA TGGGATTTTC TGTATCTGAA TTATTTAATT TTAAATTAAC GGCCTATTGA GAAATGGTTA AATGGTAAAA
TTTGATGCTG CTAACAAGCG TGGCTTACCA AACTGCATCA CTTACTAGTT TTGCGGTGTT AGGGTAGAAG GCTTGGTTTG
TGCTACTAGG GCATTTAGTA ACACCATTGT AAACAAACTT AACTTATATG TTGAAGTCTA GTAGGAAGTG AGTTTAAACC
TAACTCATTC TCACAAAACC GACTGGTGAG ATTGTTTGAC TTATGTAGTG TAAATTGGTT TCATTTCTAG TTGATGTAGG
ATCTTCAATA TACTCACTTC ATATCGAGGT ATGAACATCT CATGTGTGGA ACTAGATATT TATAGGTGGT CTAAGTGATA
CAATAGACCT ACAAACCTAA CTAAGATATA CTTTGATAAC ATATTAGAAA GTGAATTTTG GCCTTATTTC TTGTTGATGT
GGGGTTTTTA CAAAGGCCAA GCAATTGGTG GTAGTTTCTC TATGATCAAT GTCTTTTGTT ATAATTTGCT CAACTTTTGG
CTATGATTAT CCCCTGATTT TGAGTTATGT TTTTCCTTGC TAATGCTGAG GTAGTGTCTA AATGTGAGGG CTTGTGGGTG
TTACATCACC AGATCCAATG ATTCTGCTAT ATAGATGGTT TGATTGTATC ATATCATGCT TGAATGCTTG AACATGTTTT
ATGTTGGTAT ATTTGTTTGC AGCTTTTTTA TCTCACAATA ATGCAATCTG TTTTTTTTCT TCAGAGTTTT TGAAGGCAAA
GTGCTTAATG AACTGTGAAG TTTCATTGAT TCTTGAGCAC AAGTACGAGC AACTTCAACA GACATCTGAT GATCCCATGA
ATCAAGTTTC TCAGTGAGTT GAATACTTTA TGAAGTTCAT GGTTATTTGA CACAAAGGTC CTCAATAGCA TCTTTTCCTG
ATGCCCTCAA AATAATTAGT TTTTATGACA ATTGGGTTGC ACTTAACTCC TCCAAGATTT TATCTTTTAT GACACAGCTG
AAAAATATGT TTAACTTTGG TTTCCTTTAA ATGTTGCAAC ATTAGTGTCA TACAACATGT TGGCAAACAT CGTGGTCCCA
ATTGAATTTT TTGCCTCATG TAGATTTGAT ATTGATAATG AGATGGAAGA GGAGCAAAGC AGTTGATCAC CTAATGACTC
TGATTCTTTT TCTCTTCTGT TTTAGGGTAT TTGAAAAGTC CTTGCAGTAT GTGAAGCGAT TCAGCCGCTA TAAAAATCCA
GATGCTGTTA GACAAGTTCG AGAGTATCCT CCAAAACTAA ATTAAATAAT CCATCTATCA TTTCCCTTTA TCACACATTT
AAATTTTGTC AAATCAGATC GATTCCTACA TAAAAATATT GATCTAAGTT TCTTTCATAG CATTATTGAC TTTTGTATTG
TCTATGTTCT TGATAGATTA AATGACTTTT GTATCTCATT TAGTACATCT TACAAAGTTG GTCTGTGCTA ATTCCTCTTT
TACTGAAAGT AAATTCAAAG AAACTTGACA TTTATTGCCT TACTTAGGAA TTTGATCTTA ACTAACGTAC AGAATACTTG
CAAGATATCA ATTGGCTGAG TTTGAGGTAA TACAACTATT TCGTTCATGA ATTTAGTTAG GGATGCAAGT GTTCACATTA
TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA TGTATAAAGA AGTTGAGTTA
CCAGTTTCAG TTTCAGACAA TACAATATAT GATTTTTTGT CTAAATGAAT CTGTTGCAGT TGTGTGTCCT TGGCAACCTT
TGCCCAGAAA CTGTGGAGGA AGCCATTGCT ATGGTTCCAT CTATCAAGGT AAAAGTAATT TGCTTCCCCC TTTCTCTGTG
TTAGGTAGGA TTTTCTTTGT GGGAGTAGGC AAAGTTTAAG TGCTTTCCAT TCTCCCTTTC ATGCTAGTTA GAATGAAGGA
GGTAGTGGAT TAAATAAAAG CAAAATATGG TATATGTTTT CTATAATTTT CTGCTCTTAT AACATAAAAT TCAGTTTAGA
CAAGTAAGTT TTGAAACACC AGTAAGGGTG TAAAGTAATT TAGTTTACTT AAGACCTTGA AGTGACACAG ACAAAGTAAA
TACTGATAAT TGAAGGATTA TAGTACGTAT TCGAGGTAAA GATTAAATTA CCTTCATTTT CTCCGCATCC ATGTTATATG
ATAAAGAAGG ATTAGAGGTT TTAATTAGGG CAAGGATGAT ATTTTTAAAA TAAGTTTATG TTCTTATTGC TAAAATTCAA
TTTTGACAAC CTAAGTTTGA AATATCAGAG ATAATTGAAC TAGAGCAAAT ATAATTGTTT TTAGGTTTAA TAGGTTCGGA
GGTCCCTATA TTTGTGGGTT CGTTTCAATT GGGTCCTCCA ATTTTGAAAG TGATCAATTT GGTCTCTAAT TTAACAAAAT
TGAGTCAATA ATAACCTTTC CGTTAAATGC AATGGACGTC ATTAACTTTT TAAACATGTG GTATGTTGAA GCATCCTTCA
AATAAAACTG TGCCACCTGC AAATAAAAGG ATGCCTCAAC ATGCCACATG TTTAAAAAGT TAACGCCGTC CATTATATTT
AACGGAAAGG GTATTATTGA CTCAATTTTG TTAAATTAGG GACCAAATTG ATCACTTTCA AAATTGGAGG ACCCAATTGA
AACGAACCCA CAAATCTAAG GACCTCCGAA CCTATAAAAC CTTGTTTTTA TTATAAATTT CTGTTCGGAT TGTTAAAATT
CATTTTTGAC AAGCAAAGTT TGAAACACCA GAAAGGGTAT AAAGTAATTT AGTTTCCAAA ACAACCGTTA GTGGATAACT
AAAAAAAGAG TAAATGCGGA TAGTTGAAGG ATTTTGGTAT GTTTACTAGA GATCTTTTAT TTTTCTTCAT AAATCCCCTC
TGAAACAATT CCCTTCATTG ATCCACTCTC TAGCATAACA TATTGGTTAC ATAGTTCCCG TCATTTATTG TAACCTCACT
AGCTTACCAT CTGCTACGTT CTTACTTTGA AATATTATTC ATTCCCTATT GGGTGCTGTG TAGCTAATAT ATCTGAATAG
TAAACGTAAC TGCCATTAAA TCATTTACGT CAATTGCTCT AATTCTTTTA CCTGCAGACA AGAGGACGGG CTCAGGATGA
TGAAGCAATT GAGAAAATGC TGAATGACTT GTCATTGATT AAGAAATTTG AATAAATATT TCTTACAGTG GGTGTATGAT
ATAACGTTAC TAAATAAGTT TATGTAATAT GATGGAGTGC AATCTTGCAA AAACTCCATC TAAGTAAAAT ATAAAACGGA
TAAGGAGTAA AAACAAGGCT TCTGTTGATG GAATAACTTT GTTCCGGCAT ATCGTTGGTA GCTTGAGGTT TATTTGTCAC
AGACCAAAAA TTGATCTTAA TGTTGGACTT GTTAGTAGAT TCATGAATGA TCCTAAACAA TCACATCTCT TAGCTACTTA
GAGAATTATG AGATATCTAA AAGAGAACTC TTGGATATGG AATTATTTTC CCTCATCAAT GATAATTTTC TAAATCTTTA
CTCTCGTTTC CAA

>Vigan.09G034300.01
ATTCAAACAG AAAAGCTGAA TCCCTCGTTG TCATTCTTTT TTCGGTATTC CTCTTCACGC GCTCCCTCTC CTTCGTTCTT
CTACTCGCTG TTTCTGCATC TGTTTCGTCT CACATACCGG AAAGTCTCTG AAACATGTCT GGGGAAGAGG AAGAAAACGC
CGCAGAGCTC AAAATTGGAG ATGAGTTTTT GAAGGCAAAG TGCTTAATGA ACTGTGAAGT TTCATTGATT CTTGAGCACA
AGTACGAGCA ACTTCAACAG ACATCTGATG ATCCCATGAA TCAAGTTTCT CAGGTATTTG AAAAGTCCTT GCAGTATGTG
AAGCGATTCA GCCGCTATAA AAATCCAGAT GCTGTTAGAC AAGTTCGAGA AATACTTGCA AGATATCAAT TGGCTGAGTT
TGAGTTGTGT GTCCTTGGCA ACCTTTGCCC AGAAACTGTG GAGGAAGCCA TTGCTATGGT TCCATCTATC AAGACAAGAG
GACGGGCTCA GGATGATGAA GCAATTGAGA AAATGCTGAA TGACTTGTCA TTGATTAAGA AATTTGAATA AATATTTCTT
ACAGTGGGTG TATGATATAA CGTTACTAAA TAAGTTTATG TAATATGATG GAGTGCAATC TTGCAAAAAC TCCATCTAAG
TAAAATATAA AACGGATAAG GAGTAAAAAC AAGGCTTCTG TTGATGGAAT AACTTTGTTC CGGCATATCG TTGGTAGCTT
GAGGTTTATT TGTCACAGAC CAAAAATTGA TCTTAATGTT GGACTTGTTA GTAGATTCAT GAATGATCCT AAACAATCAC
ATCTCTTAGC TACTTAGAGA ATTATGAGAT ATCTAAAAGA GAACTCTTGG ATATGGAATT ATTTTCCCTC ATCAATGATA
ATTTTCTAAA TCTTTACTCT CGTTTCCAA

>Vigan.09G034300.01
ATGTCTGGGG AAGAGGAAGA AAACGCCGCA GAGCTCAAAA TTGGAGATGA GTTTTTGAAG GCAAAGTGCT TAATGAACTG
TGAAGTTTCA TTGATTCTTG AGCACAAGTA CGAGCAACTT CAACAGACAT CTGATGATCC CATGAATCAA GTTTCTCAGG
TATTTGAAAA GTCCTTGCAG TATGTGAAGC GATTCAGCCG CTATAAAAAT CCAGATGCTG TTAGACAAGT TCGAGAAATA
CTTGCAAGAT ATCAATTGGC TGAGTTTGAG TTGTGTGTCC TTGGCAACCT TTGCCCAGAA ACTGTGGAGG AAGCCATTGC
TATGGTTCCA TCTATCAAGA CAAGAGGACG GGCTCAGGAT GATGAAGCAA TTGAGAAAAT GCTGAATGAC TTGTCATTGA
TTAAGAAATT TGAATAA

>Vigan.09G034300.01
MSGEEEENAA ELKIGDEFLK AKCLMNCEVS LILEHKYEQL QQTSDDPMNQ VSQVFEKSLQ YVKRFSRYKN PDAVRQVREI
LARYQLAEFE LCVLGNLCPE TVEEAIAMVP SIKTRGRAQD DEAIEKMLND LSLIKKFE*