GBrowse Details

Vigan.09G024700.01

Basic Information:
Name: Vigan.09G024700.01
Multiple alignment
Variant Information
Position: Chr09:2721012..2726126 (+ strand)
Length: 5115
Functional Information:
Description: Similar to Calcium-binding EF hand family protein. [XP_007029833.1, Theobroma cacao]
GO: Molecular Function: calcium ion binding (GO:0005509)
InterPro: EF-hand domain (IPR002048)
EF-hand domain pair (IPR011992)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:13.89,6.79,6.05,15.68,3.80,9.80,6.31 ,9.82
Arabidopsis thaliana homolog: AT1G64850.1
Automatic updates:
Name: NM_001248981 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100526914 (LOC100526914), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001248981 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100526914 (LOC100526914), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251509 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527595 (LOC100527595), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251509 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527595 (LOC100527595), transcript variant 2, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:2721012..2721172 (+ strand)
Length: 161
Type: five_prime_UTR
Position: Chr09:2721173..2721200 (+ strand)
Length: 28
Type: CDS
Position: Chr09:2722509..2722635 (+ strand)
Length: 127
Type: CDS
Position: Chr09:2722752..2722824 (+ strand)
Length: 73
Type: CDS
Position: Chr09:2725395..2725667 (+ strand)
Length: 273
Type: CDS
Position: Chr09:2725668..2726126 (+ strand)
Length: 459
Type: three_prime_UTR

>Vigan.09G024700.01 class=Sequence position=Chr09:2721012..2726126 (+ strand)
AAAAGAAAAC AAAAACAAAA TGATGAGATG TCTGATTTTA GATTCTGCAA AGGATTAACG TAAGTTTGAT TTCATAGTAT
ATATTATTGT GCCTTAAATC TATCACCACA ACCACGCAGA CAAAGCTTCA TATCTGAGAG ACTTGTTTGT GGTATCACAG
CATGGGACAA GTATTTGACA AGTTAGATGG TATTCCTTAT TTCCCTTCTC ATTTCTTCTT GTTTTACCTT CTTCTTTCTT
CCTTCCATTT CCTGATTTTC AGTTCCTGCA TCTTTTTCAT TTGTTCTCTT ATCTTCTCTT TCTCTGTTTT TGAAATTTCC
CTTCTGTGCC TACAATCAAG GGTCGTTTAG ACAGTGGACC AAGTATTAAT TAATAATAAG AAGAAATCAA AAGCTTGAAG
CTTGAAAATA TATTTGTTTT TTATACATAT ATAACCCCAG TTATGTCCTG AATGAGTAGT AGGCTTCACT GTGATTGAAT
TTATTGCCAT GTTGTGCTAT GGAAAGTATG AAATTGGGGA AGTTGGGGTT TCTTGCTGTA CCAAATATGG TATTTTTGAA
AGAAATGGTT GTGATTTTCA AGTGGGGTGT GGATTAAATT TGAATGTGAT AAATCTGGTA AAGTAGTAAC TAGATAGGTG
TTGAAGCTGT TCAAACCCTT ATGTTTGGTT TCTGCTGGAA ATTAAGCTTT TGAATTGGGA ATTTATGTAA ATCCTATTAC
AGGGGTTGCT TATTTTTTGA ATCATGCTTT GGGGGTGTCT GATGCTTTGC TTTTCAAGTC TAAAAGTTAA GCCATTTTGG
GATAAGTTGT GGTCAGTGGC ATCATTTGTT CCGTGTGTGC AACAAAGGCT GTGATTTGAT GGCAAGAATG TGTGAAGTTT
AGATGTGTAA GATTACACAG GACAAGAAAG CCAAGACTGA TAGAAGACTA AATAGATATT TGGATTTGGT TATGTAACCC
AACTTGTGAT GTAGGATAGA AATAAAACCA ATTAAAGAGA AAACAAGGAG AAAAATGATA GATGGGAAAT AAGGAGAAAA
AGGATGAGAA AGTATGAGAG CAAGAAAAGT TGCTGTAATT TTAGGGTCTC CATTCAAGTA TTGAACACTT GATTTTTACG
AAGTGGTTTT TAACAGCTAG ACCAAAGATA TTAGTATTCA AGTAGCATAA ATTCAGGCTG AAGAAATGAA CTTGATATTA
CTTACTGAAT CTTTCAAATT TGTAAAGGTT ATCACAAACC CCTAAATTAT TAATGATTCT GTTCTGCATA ATTGGTATTT
CTACGAATCC ACTCTTTGAT GGTTGAAAAC TTTCCTAGTT CACTCTTCAT GAACATCAGG TAACATGATT TAATGATAAT
GCATTTTTTA TCGCCTTCAT TAAGTATATT GACATTCTTG CATATGTAAG ATACGGCATA TTAAAAATAG CACACAATTG
TGTGTTCATG TTATAGTGAT CAATTGCTAA TGTTTAATAG CTATGCATTT TACACAGGTA AGGAGTGGAG GAAAAGGCAA
ATAAGAAAGA TAACAGATCA AGTTTTTGAA AAAGTACAGA ATCAAAAGGA AAGTGATAAG TTGAGTTTTG AAGATCTGTA
TATTGCTGTC TTACTCGTGT ACAAGTAAGA AGGCTGCTTC ATTATTGTTT TTGACATTTT GGTGGCCTTG ATAATACGTT
TTTCAACTAC TGAATGAATT TGATTATTTC TTCTAAAAGA GACCTGTTTC TATGTTATAG TGATATCAAC AAGTATATAC
CTGGTCCCCA TTTTGACCCT CCATCAAAAG CCAGAGTCAA AGAAGTCAAA GAGGTACTTT ATTGTGACAT AATGAGATCA
AACTAGGTAC TCTATTTATT TATATATGTA AAAGTTTTAC ACAGTTGAAA CCAATCTAAG CTATGGTGCT TTTTCTTATA
ATCATGTTAT GTACTGAATA CCTTTTTTAA CTTTTTAATA ATATATTACT AATTCAGGTT TTCCATTATC ATAACAGAGG
AGAGTTTAAA TACAAGCAGT AATCCTGCTT CATCTAAATA CAAGCAGTAA TCCTGCTTCA TCTGATAAAT TGTTTGTTAG
AGTTTTGGTT AATTTGAGAG ATAACCATGT CAGATGTATT TATGGTTTAG TGCATACTTG GTGAAAGTGA AAGTGATAAT
GAGAGGAATT CAAAATGGCA AATGAAAATC TTCGTCGTAT TAAAGCATGT TTCAAGTCAA GATATATAAA TCGTCATCGT
ATTACAACAT ATCTCAAAGT GAAAGTCAAG TAATGAATCT GAGCATGGAA TTTGAGAAGG ACTTCAACGT TCTGGTTTCC
CTGTTTTCAC CTCTGCTCGT ATTGGTTGTA TTTTAACTAA TTGGTTTGAT CTAAGTGAAT TGGGAAATTT GTACATAAAG
GTGTGTCATG TAACTTGGAA GGAAGAAATA CTGCAGCCTG TAGACATTGT TACTCAGTAA AATTGCCATT GTTAAACACT
TGTGATTGCA ATTCAACAAT TAATAGAATT GGATCAGGGC TATTATCCAA TGTCAGGAAA AGACTTTCTG CCCTGCAGTG
TCTCTGTTAG GATATAGGGT ATTTGGGATA TAAGGGTATA ATGGGAAACG GGATTAGGAT AGAAGGTAGA GGAATCCCAT
TTCCCATTAT ACCCTTATAT CCCAAATACC CTATATCCTA ACAGTCTCAA ACTATGTGAA AAATAATAAT TCTCCTCTTA
GTTTAGTATT AAACTAGCAC AAGTGTAATG ATGATTTGTG TTTGTGAAGA AATTTCATGT TTCTGAATTT GCAGAGGGTT
TGAGGCAATG ATCGACAGTT GGTAACAAAG ACTATTCTAT CATCATGTGT CACATAATGG AAGAGATGGA TTGGAATGGA
ATGGAGTAGA ATGATTTTAT GGAACATAAT GGAATGTAAG ATATACTGAA AAAATATTCT CATTCCTCTC AAATTGGGGG
AGAAAGAAAA GTTAAGGTAA ATAATGAACT AGGATGGAGT AGGTTGCACT AATTTCCTTT TCATACTCAT CTTACCAATT
CAAACAACTT AACATAACAT TATATCTTCT TTCATCAACT GAGACATAGC CTAAATATCA GGGACTTGTA GCGTGTATGA
CAAACTATAA TCTGTGGGCA GAATAACATA ACTGACTACT TTGGTTCAAA GACCAATGTT TGTGGTGTGG TTTGAGTTGT
CTACTAACTT TGAGCTAAAG TGTTCATTGA ATAAGTGAGT TTTCAATCCC AAAGAAGTTC ATACATTTTA ATACTATTTT
AAAAACTAAT GGTGGATGGG AATACATCAC AAAACATTAA CTAAAAAGTC AGAGTGTTTT AACTAGAAGT TTGCAAGTGT
CAATAAGGTC ATTATATTCA AAGTATTGTT CGTTTTGGTG TTCAGTGATC TATCACGGTT TTGTTCCTGT AAAATGGTGT
CTAGATAGAT TCGAGGGTGA GAGTATTCAG CTCTTATGAG ATGTGAAATA TTTTGTTGTA TTGGAACACA AGAAGAATAT
CTTGAAATTT GATGGGTTCA AACATTGACA AATTTCTTAT AATTTTCCGA GTCATGTTTA TTATCGTTCT GCCTGGAAGG
TACTGATTTG TATCTTAAGA AGGTTATCAG TGTGGTTAGG GGGAATGTAG TAAGATACTT TGTCAGTATT GTTGTGTAAG
GTTGCATCTT CTGCATTATA AGAGAAAACT GAATAAGATA TTTCAATTTC ATAAATCACG TGAGTAGACT TGGGTAAAGT
AAAGAATATC AACTTTACCT GGGGTGAAGA TCATGCAGAA GTACCTTAAG AACCATGAAT TCATTCCACA TCACATTTCA
AAGATATAGT CACAGAGTGA TTCAGCACTG CTATTGAATA GTTTCAATAC TGTGAAAACC ATTGGAATAC AAATGTAATT
TTTGAAAATG TGGATTCTTA AATTCTGTTA TTTTGTAGAA GTGCATAAGA CACTATGGTT TTTAAATTTC TGAGTGTGAC
TATTGTGCTG GACATGCCTC TCTTGCAATT TATCAGATGG GTTCTGCACT TCCCATTAGA GCTTCACTTT ATTTGCAAGA
AGCTAACTAT TCTTTATCAT GTACTTGATT TACCCTTTTT TTTAATAAGA ATCAACAAAC AGACAAAATT TATCATGTGC
TAGGAATTGA GAGGCACCTT TTCATTTTTC TTCAAAATGG TCTTTTTGTT ATGCTTAACT ACGTTAAAAT TCAACTCTTA
AAACAAGCTA AATGTACAAA GACAACTTTG TTCAGACCAA CAGAATTTAT CATTCTACTT CAGCTAGATT TGATTTTTTT
TTTTATGTAT ACTATAATTA TTAGTTTGTT GGAACTAAGT GTGATTCATA TAACAATTTG CAGAAATGTG ATATCAACCT
TGATGGGGAT ATTGACCGTG AAGAATTTTT CGACTTCATC CTGCAAATGA CAGCTGATAC ATTCACTGTT GTTAGCCAAA
AACTTATTGT CACTATGGTT GTAGCACCAA CAGTTGCAGT GGCAACAAAG AGAGCCACTG AGGGTGTTCC ATATGTTGGG
AAAGTGGTGA AGAAGATACC GAATTCAGTT TATGCTTCCC TTGTAACCAT TGCAGCTGTG TGGTTCCAGA AAAAGGCTCA
AAGTTCTTCA CTGTAGCCAT TGCTCATCAA GTCTTTCACA AAGAATGCTC GAATTCTCTT GATTCTGTAC ATAGGATTGA
AACTGTATCC ATGTTAGATA TAAAATGACA ATTGATAAAA GAGTTAACTA TGTTTTTATT CCTAAACCAT AAGGCAAATT
TGGTTTTTTC CCTCTCTCAA ACTTTAATCT TGTTATGTCC TTATACTTAA AGAAAGACAT ATATGTAATA ATTTTTGTCC
ATTAGCGTTA ATTGTTTTTT GACGTGATAA ACGACAAATC ACATTAGATG CAATCCATAA GATCTTTTCA TGTCAACGTC
TTAAAAAATC TAACGTGATT TGTAGTTTTT CATGCTAAAA TATAATTAAC ATTATTGGGT GAGAAGAATT ATATTCATGC
ATTTCTTAAT TATAAGGATT TAACATGATC AAAATTTGAG ATAGAAACAA AAATCAAAAT CATATTATAA TTTAG

>Vigan.09G024700.01
AAAAGAAAAC AAAAACAAAA TGATGAGATG TCTGATTTTA GATTCTGCAA AGGATTAACG TAAGTTTGAT TTCATAGTAT
ATATTATTGT GCCTTAAATC TATCACCACA ACCACGCAGA CAAAGCTTCA TATCTGAGAG ACTTGTTTGT GGTATCACAG
CATGGGACAA GTATTTGACA AGTTAGATGG TAAGGAGTGG AGGAAAAGGC AAATAAGAAA GATAACAGAT CAAGTTTTTG
AAAAAGTACA GAATCAAAAG GAAAGTGATA AGTTGAGTTT TGAAGATCTG TATATTGCTG TCTTACTCGT GTACAATGAT
ATCAACAAGT ATATACCTGG TCCCCATTTT GACCCTCCAT CAAAAGCCAG AGTCAAAGAA GTCAAAGAGA AATGTGATAT
CAACCTTGAT GGGGATATTG ACCGTGAAGA ATTTTTCGAC TTCATCCTGC AAATGACAGC TGATACATTC ACTGTTGTTA
GCCAAAAACT TATTGTCACT ATGGTTGTAG CACCAACAGT TGCAGTGGCA ACAAAGAGAG CCACTGAGGG TGTTCCATAT
GTTGGGAAAG TGGTGAAGAA GATACCGAAT TCAGTTTATG CTTCCCTTGT AACCATTGCA GCTGTGTGGT TCCAGAAAAA
GGCTCAAAGT TCTTCACTGT AGCCATTGCT CATCAAGTCT TTCACAAAGA ATGCTCGAAT TCTCTTGATT CTGTACATAG
GATTGAAACT GTATCCATGT TAGATATAAA ATGACAATTG ATAAAAGAGT TAACTATGTT TTTATTCCTA AACCATAAGG
CAAATTTGGT TTTTTCCCTC TCTCAAACTT TAATCTTGTT ATGTCCTTAT ACTTAAAGAA AGACATATAT GTAATAATTT
TTGTCCATTA GCGTTAATTG TTTTTTGACG TGATAAACGA CAAATCACAT TAGATGCAAT CCATAAGATC TTTTCATGTC
AACGTCTTAA AAAATCTAAC GTGATTTGTA GTTTTTCATG CTAAAATATA ATTAACATTA TTGGGTGAGA AGAATTATAT
TCATGCATTT CTTAATTATA AGGATTTAAC ATGATCAAAA TTTGAGATAG AAACAAAAAT CAAAATCATA TTATAATTTA
G

>Vigan.09G024700.01
ATGGGACAAG TATTTGACAA GTTAGATGGT AAGGAGTGGA GGAAAAGGCA AATAAGAAAG ATAACAGATC AAGTTTTTGA
AAAAGTACAG AATCAAAAGG AAAGTGATAA GTTGAGTTTT GAAGATCTGT ATATTGCTGT CTTACTCGTG TACAATGATA
TCAACAAGTA TATACCTGGT CCCCATTTTG ACCCTCCATC AAAAGCCAGA GTCAAAGAAG TCAAAGAGAA ATGTGATATC
AACCTTGATG GGGATATTGA CCGTGAAGAA TTTTTCGACT TCATCCTGCA AATGACAGCT GATACATTCA CTGTTGTTAG
CCAAAAACTT ATTGTCACTA TGGTTGTAGC ACCAACAGTT GCAGTGGCAA CAAAGAGAGC CACTGAGGGT GTTCCATATG
TTGGGAAAGT GGTGAAGAAG ATACCGAATT CAGTTTATGC TTCCCTTGTA ACCATTGCAG CTGTGTGGTT CCAGAAAAAG
GCTCAAAGTT CTTCACTGTA G

>Vigan.09G024700.01
MGQVFDKLDG KEWRKRQIRK ITDQVFEKVQ NQKESDKLSF EDLYIAVLLV YNDINKYIPG PHFDPPSKAR VKEVKEKCDI
NLDGDIDREE FFDFILQMTA DTFTVVSQKL IVTMVVAPTV AVATKRATEG VPYVGKVVKK IPNSVYASLV TIAAVWFQKK
AQSSSL*