GBrowse Details

Vigan.09G015200.01

Basic Information:
Name: Vigan.09G015200.01
Multiple alignment
Variant Information
Position: Chr09:1672831..1676224 (+ strand)
Length: 3394
Functional Information:
Description: Similar to protein mago nashi homolog. [XP_004501210.1, Cicer arietinum]
GO: Cellular Component: nucleus (GO:0005634)
InterPro: Mago nashi protein (IPR004023)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:181.14,127.47,70.74,48.21,72.18,123. 69,108.90,56.94
Arabidopsis thaliana homolog: AT1G02140.1
Automatic updates:
Name: NM_001249161 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305742 (LOC100305742), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249161 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein mago nashi-like (LOC100305742), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Name: NM_001363188 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein mago nashi homolog (LOC100499908), transcript variant 2, mRNA.
PubMed ID: 21667246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr09:1672831..1672992 (+ strand)
Length: 162
Type: five_prime_UTR
Position: Chr09:1672993..1673211 (+ strand)
Length: 219
Type: CDS
Position: Chr09:1673305..1673481 (+ strand)
Length: 177
Type: CDS
Position: Chr09:1675837..1675896 (+ strand)
Length: 60
Type: CDS
Position: Chr09:1675897..1676224 (+ strand)
Length: 328
Type: three_prime_UTR

>Vigan.09G015200.01 class=Sequence position=Chr09:1672831..1676224 (+ strand)
GACAAATTGA AATTCATTTG AAATGGTTCA GAAAGGGGGA CCCTAAAAAA CCCTTCTGCC CTTCTTCTCC TTCTACAGAG
ACCCTCAGTA GCTTCTGACG CTCACAATTT CTCTGTTCTC CACGAAACTC ATAGAGCTTC GTTTCGATTC GCGGTGGTTT
CAATGGGGAG CGAAGAGGAG AACAACGAAT TCTATCTCCG CTACTACGTC GGTCACAAAG GGAAGTTCGG TCACGAGTTC
TTGGAGTTCG AGTTTCGCCC CGACGGGAAG CTTCGCTACG CTAATAACTC CAACTACAAA AACGACACCA TCATCCGCAA
GGAGGTTTAC CTCACTCCCG CCGTTCTCCG CGAGTGCCGT CGCATCATCT CCGAAAGCGA GGTAACCCTA ATTTACAGAC
TCACCAACTA AGTTAACCGT CTTTTTGTGA ATTCTTCGTT GTTTGGTTAG TTTGTTTATT TGTTTGGTGT GTAGATTATG
AAGGAAGATG ATAACAACTG GCCAGAACCG GACCGGGTGG GGCGACAGGA GCTGGAAATT GTTATGGGGA ATGAGCACAT
ATCGTTCACG ACCTCGAAAA TTGGATCTTT GGTGGATGTT CAGAGCAGTG CTGACCCGGA AGGACTTCGT ATCTTTTACT
ACCTTGTTCA GGTGAAATTG TGGTTTTGAG TTTTGATTGA TCTATTTAAG GTTTTGAATT GCGCATGCTC AATTTGATGG
ATAATAATTT GTTGGCCATG AAAGATGTTC TCACAATTTT CTCTCACAAA TGGCAAGAAG CAGTGGTGTT TGGCTTACCT
TTTCAGTGAA GAAGCATGAA TACTGAAATT TCCAGGCTTT CTTTTTCTCA GTTGATACTT GTTGTATTCA CGACTTGATA
AGTTGGACTA AGAGATGTTG GAACAGTTAT TTGATGATAG CATGTAAACC CAAATTAAAT ATGCCAAATA ACCGTGATGC
TCTGTTTGTT GTGGGGTGAA ATGGTTATTG GGGTGATTGT TGAGAAAAAC AAATAGGTGT ATCTTAGTTA AGGATCTAAA
GAACTAGGTA GTTGTTGAAT AAATGATTTT ATAGCAATCA GGGTTAAAAC TATGGATTGG AGACTTCTAG GTCATGGAAA
CTACAGCTGA TAGAAGACCC CTATTTGGCC TGGAACAAGT ATAATAAAGT AATACATGGA AATACTATAT TAGTGTGTTT
CAACAATCTT CTATGAGTGA TTGCACAACG GTTCATTGTT TCTTTGGTTG ACTTATTCTT CTATAATATT TGATATGTGA
TTTTCTTATC TTGAAATACA TGAATATAAG CTACCTAGTT AACTCCAATA AAGAGGTTAT TATAGATTTT AGGAATTTTT
ATTATTTTTT TTTTGTAAGA GTGCAATGCT CATTTCACAC AATACACATG ACAGCAATAG GCCTTAGGTA TTGGCCACGC
ATGCCACTGA GACAAGGTTG TATGTTTAAT GTTTCAGTTA ATAGTGTCTT TGTCAGACTT GGAAGGAAAG GAAATATGCC
GAAGTTTGTT GGGATTATTG CATCCCAGTA CTTGGAAATT GTATAATTCA TCATTGTGTA ACAAAATACC GGATGATGTT
GGAACATGAC CTGATCCCTT TACATTAGAA TGAGTAACAA AAGTTTATAT GACGTAGTTT GACTCTTGTC CTGTCTAAGG
AAGCCTGAAT GTGCTCTCTA GTTGACATGA TTCATACCTT AAGCACTGTA ACTTGCATTG CCCAAAACCA TTTTTTAGAG
CTTTGAATCT TTGACAGACT GGAGTGATCT AGGTGGCTGT GAAGGAGACT AGGAAATTCA GTAGTAGTCC AAACAATGGG
TGGTGTTGAC CTGAAATAAT GAAGTCCACA TTATTCATGG CCCTTGGGCA AATATGTGTG CCTTACTTGT GGTTTGGGAT
CAACTTAGAG CCATTTGCTG AGGCGATAGA ATGAGGAAGA TTGTTTATTT GACTAATGTG GTTTGGGATC AACTTACTGC
CTTTGTTCAA AGTTCCTAAG CTGTTTGATT GGTTCTTATA CAGGCCAGCT GTAATTTTAT GCGGAAGCAG ATAAAACTTA
TGTCTTCTAT TACAATACTT CATCACTTCT AATAATTAAT GGTGATAATA TCAGAGCATG AGTTACTCTT GATGGTCCTG
TTCTTTGTTA CATCCTTCCA GAATGCTTTC TAAATTATCC TGAGTAATTA CTGTTATTTA TTTATTTATT TTTTGAGTGA
GGAAATATAT CATCATGAAT CATTCTGAAA TGCTGTTCTT GGTCATAGCT TGAGCTTTGC ATTGGGCCAG TTTTATGATG
TGTCCAGTTG AAGACAAATG AATGACTCTT CTTTGGTGTT GTGAACTTAC TTCAAGTGGT TTTAGATTAA ATAAAAAAAC
AATTGGCTTG TGGTTATGTA ATTTGTTGTA TTAAATGGTC AGCATTGAGT TAGAAAATAA CTCTCTAGTT ATCAAGCTGA
AATTCTTTTG GCCTTAAAAT TATCCTTGTG CTGAAAGTGT GTGCTGCATT CTCATGGATC CCTTTTGGGT AGGGAGAATT
AATGTAGAAG TTAAAATTAT TCCAGTCGTT TGGGAGAAAT TTTCCATTGT CTTGGCTTTT AATAAGCCTA TGGAATAATT
TCTTGGCATA TAGGTCAGAT TTATGACTCC TTATCATCTT AAAGCCTTTC TAAGTACAGT AATGAGAAAT TAAACAGCTT
CCTTGACCAG GGTCCATGAA AATTAGAAAA AATATTATAT AACACTGTAA AGAAAAATGA AGACAAAGTG ACCTAATAAA
GATCACCAGA GAAAGTCGCC AATAATGTAA GAATCTCATT TTCAAAACTC CAATGTCGTT TTAACTGATA TTTGAAAATC
CCTTTTTCTG ATTATACTTC ACTAAGTCTT AGGATGGGTA GTGTTGTGAT TATTAGCAGA TGTGAATGCC AGATTTTGTC
AACTAATACC TTTTTTTGTT CTGTTTTTTT TATATACTGT TTACAGGATT TGAAGTGCTT TGTCTTTTCT CTCATTTCAC
TTCACTTCAA GATCAAACCT ATCTAAGGTG CTTTCAGTAT CATGCTTTCT TCCTCTTGGA GCCTTGCTAA TGGAGTTCAA
GATCTGATAG AGTGACTTTG TAATCGTGAG TATGATTTGG TTCTATATTC TCATGAAATG GAATTTTGGG GGTGAAATCC
CTGTACTAAA AGTGTTGATT GGATTTGATC GGATTTTATG CATGACTGAG TTATCATTCT TTCATTGCCT TGCTTTCACA
GTTGAATCAT CCCGAATGTT ATATTCTGGA ATTATTGTCA GCGTGAGATG CGTACATGCT ACTTTTATGA CGATTTCTGA
GATGGAAAAA TATTTTACTT AGTTTATTTC AAAA

>Vigan.09G015200.01
GACAAATTGA AATTCATTTG AAATGGTTCA GAAAGGGGGA CCCTAAAAAA CCCTTCTGCC CTTCTTCTCC TTCTACAGAG
ACCCTCAGTA GCTTCTGACG CTCACAATTT CTCTGTTCTC CACGAAACTC ATAGAGCTTC GTTTCGATTC GCGGTGGTTT
CAATGGGGAG CGAAGAGGAG AACAACGAAT TCTATCTCCG CTACTACGTC GGTCACAAAG GGAAGTTCGG TCACGAGTTC
TTGGAGTTCG AGTTTCGCCC CGACGGGAAG CTTCGCTACG CTAATAACTC CAACTACAAA AACGACACCA TCATCCGCAA
GGAGGTTTAC CTCACTCCCG CCGTTCTCCG CGAGTGCCGT CGCATCATCT CCGAAAGCGA GATTATGAAG GAAGATGATA
ACAACTGGCC AGAACCGGAC CGGGTGGGGC GACAGGAGCT GGAAATTGTT ATGGGGAATG AGCACATATC GTTCACGACC
TCGAAAATTG GATCTTTGGT GGATGTTCAG AGCAGTGCTG ACCCGGAAGG ACTTCGTATC TTTTACTACC TTGTTCAGGA
TTTGAAGTGC TTTGTCTTTT CTCTCATTTC ACTTCACTTC AAGATCAAAC CTATCTAAGG TGCTTTCAGT ATCATGCTTT
CTTCCTCTTG GAGCCTTGCT AATGGAGTTC AAGATCTGAT AGAGTGACTT TGTAATCGTG AGTATGATTT GGTTCTATAT
TCTCATGAAA TGGAATTTTG GGGGTGAAAT CCCTGTACTA AAAGTGTTGA TTGGATTTGA TCGGATTTTA TGCATGACTG
AGTTATCATT CTTTCATTGC CTTGCTTTCA CAGTTGAATC ATCCCGAATG TTATATTCTG GAATTATTGT CAGCGTGAGA
TGCGTACATG CTACTTTTAT GACGATTTCT GAGATGGAAA AATATTTTAC TTAGTTTATT TCAAAA

>Vigan.09G015200.01
ATGGGGAGCG AAGAGGAGAA CAACGAATTC TATCTCCGCT ACTACGTCGG TCACAAAGGG AAGTTCGGTC ACGAGTTCTT
GGAGTTCGAG TTTCGCCCCG ACGGGAAGCT TCGCTACGCT AATAACTCCA ACTACAAAAA CGACACCATC ATCCGCAAGG
AGGTTTACCT CACTCCCGCC GTTCTCCGCG AGTGCCGTCG CATCATCTCC GAAAGCGAGA TTATGAAGGA AGATGATAAC
AACTGGCCAG AACCGGACCG GGTGGGGCGA CAGGAGCTGG AAATTGTTAT GGGGAATGAG CACATATCGT TCACGACCTC
GAAAATTGGA TCTTTGGTGG ATGTTCAGAG CAGTGCTGAC CCGGAAGGAC TTCGTATCTT TTACTACCTT GTTCAGGATT
TGAAGTGCTT TGTCTTTTCT CTCATTTCAC TTCACTTCAA GATCAAACCT ATCTAA

>Vigan.09G015200.01
MGSEEENNEF YLRYYVGHKG KFGHEFLEFE FRPDGKLRYA NNSNYKNDTI IRKEVYLTPA VLRECRRIIS ESEIMKEDDN
NWPEPDRVGR QELEIVMGNE HISFTTSKIG SLVDVQSSAD PEGLRIFYYL VQDLKCFVFS LISLHFKIKP I*