GBrowse Details

Vigan.08G365800.01

Basic Information:
Name: Vigan.08G365800.01
Multiple alignment
Variant Information
Position: Chr08:46509332..46510660 (- strand)
Length: 1329
Functional Information:
Description: Similar to calmodulin-like protein 11-like. [XP_004497995.1, Cicer arietinum]
GO: Molecular Function: calcium ion binding (GO:0005509)
InterPro: EF-hand domain (IPR002048)
EF-hand domain pair (IPR011992)
EF-Hand 1, calcium-binding site (IPR018247)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:18.11,6.33,6.38,7.33,4.30,5.19,11.76 ,4.25
Arabidopsis thaliana homolog: AT4G14640.1
Automatic updates:
Name: NM_001249981 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100526987 (LOC100526987), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:46509332..46509435 (- strand)
Length: 104
Type: three_prime_UTR
Position: Chr08:46509436..46509573 (- strand)
Length: 138
Type: CDS
Position: Chr08:46510017..46510097 (- strand)
Length: 81
Type: CDS
Position: Chr08:46510173..46510330 (- strand)
Length: 158
Type: CDS
Position: Chr08:46510415..46510490 (- strand)
Length: 76
Type: CDS
Position: Chr08:46510491..46510660 (- strand)
Length: 170
Type: five_prime_UTR

>Vigan.08G365800.01 class=Sequence position=Chr08:46509332..46510660 (- strand)
AAATTATACT TTTTTAAAAA GAAAAACTTT TAATTGAAAA AGAAATAAGG CTTTCTACAT TGAAGCTAGC CTCTACAAAT
AGCCGAGTTG AGGTTCAAAA TTTCTATATA CACAACACAT CAATCAAATT TCTCTCTCTA TTTTCTGAGT GAAGCATAAA
CACAAACACC ATGGCAGATG TTCTGAGCGA AGAACAGATT GGTGAGATCA AAGAAGCCTT TGGCTTGTTT GACAGAGATG
GAGACGGTGA GTTCACTTTT TCTCTTTTTC AGTTTTCATT TCAGAAATAT AACAATGCTA ATAACTTTTA TATATATGTT
GAATTGACAG GGTGCATCAC TGTGGAAGAA TTGGCCACTG TTATCCGATC ACTGGATCAG AACCCCACGG AAGAAGAGCT
CCAAGATATG ATAAACGAGG TCGATGCAGA TGGCAACGGA ACCATAGAAT TTGTTGAGTT TTTGAACTTA ATGGCCAAGA
AAATGAAAGT AAGTATATGA TTATATGTAT ATACTTCCAA ACCATGCTTT TCTTCCAGAG ATTAACTCAT TTTTCTGATT
TAGGAAAGTG ATGCAGAGGA AGATCTCAAA GAGGCCTTCA AGGTGTTTGA CAAAGATCAA AACGGTTACA TTTCAGCAAG
TGAGGTATAT ATTATATGAC CTTTTTATTC TTTCTATTCA CTTTTTATAT TTTCTTTCTT TGACGGCAAT GACAAATCAA
AGCGTTCTAA GCGTTTCTTC AAACTTTAAC AAAACCGAAC CTCTTCCCTT TTCAATATTT TTCTATAAAT GTGCGTTTAC
TTTTCTGGCT ACGTAGCAGA AGCTGCATAT GCAGGTTTTT TCTTCCTTTT AAAATTTTCA ACCCATCTTG GTCAAATTTC
CTCCTTCAAT TATTGATATT CATGCGGTGT CATTTTTTTT TCAATTAATC TTTCCATACA TATCAATAAC TTATAAATAA
AAATATTTAA TTATTAAAAA GTATATTTTA AGTTTAACTT AATTTTATAA AATTGATTTT TAAGATAAAG TTTCCATCTT
AGATGAAGTT TGAAAAATAA AATTAAAATG GTTTGTTTGT TATGCAGTTG AGACACGTTA TGATAAATCT GGGTGAGAAA
TTAAGTGATG AGGAGGTGGA GCAGATGATC AAAGAAGCGG ATTTGGACGG TGATGGTCAA GTTAACTATG ATGAATTTGT
GAAGATGATG ATGACCGTTG GATGAAACTT TCATATGTTT TCTTTTTAAC GTTTGTTGTA CTATAATTAA TGTAGCACAT
ATGCATCATG TGTGAATGAC CAATATACAT TAGCTTTCAC ATCTCACAT

>Vigan.08G365800.01
AAATTATACT TTTTTAAAAA GAAAAACTTT TAATTGAAAA AGAAATAAGG CTTTCTACAT TGAAGCTAGC CTCTACAAAT
AGCCGAGTTG AGGTTCAAAA TTTCTATATA CACAACACAT CAATCAAATT TCTCTCTCTA TTTTCTGAGT GAAGCATAAA
CACAAACACC ATGGCAGATG TTCTGAGCGA AGAACAGATT GGTGAGATCA AAGAAGCCTT TGGCTTGTTT GACAGAGATG
GAGACGGGTG CATCACTGTG GAAGAATTGG CCACTGTTAT CCGATCACTG GATCAGAACC CCACGGAAGA AGAGCTCCAA
GATATGATAA ACGAGGTCGA TGCAGATGGC AACGGAACCA TAGAATTTGT TGAGTTTTTG AACTTAATGG CCAAGAAAAT
GAAAGAAAGT GATGCAGAGG AAGATCTCAA AGAGGCCTTC AAGGTGTTTG ACAAAGATCA AAACGGTTAC ATTTCAGCAA
GTGAGTTGAG ACACGTTATG ATAAATCTGG GTGAGAAATT AAGTGATGAG GAGGTGGAGC AGATGATCAA AGAAGCGGAT
TTGGACGGTG ATGGTCAAGT TAACTATGAT GAATTTGTGA AGATGATGAT GACCGTTGGA TGAAACTTTC ATATGTTTTC
TTTTTAACGT TTGTTGTACT ATAATTAATG TAGCACATAT GCATCATGTG TGAATGACCA ATATACATTA GCTTTCACAT
CTCACAT

>Vigan.08G365800.01
ATGGCAGATG TTCTGAGCGA AGAACAGATT GGTGAGATCA AAGAAGCCTT TGGCTTGTTT GACAGAGATG GAGACGGGTG
CATCACTGTG GAAGAATTGG CCACTGTTAT CCGATCACTG GATCAGAACC CCACGGAAGA AGAGCTCCAA GATATGATAA
ACGAGGTCGA TGCAGATGGC AACGGAACCA TAGAATTTGT TGAGTTTTTG AACTTAATGG CCAAGAAAAT GAAAGAAAGT
GATGCAGAGG AAGATCTCAA AGAGGCCTTC AAGGTGTTTG ACAAAGATCA AAACGGTTAC ATTTCAGCAA GTGAGTTGAG
ACACGTTATG ATAAATCTGG GTGAGAAATT AAGTGATGAG GAGGTGGAGC AGATGATCAA AGAAGCGGAT TTGGACGGTG
ATGGTCAAGT TAACTATGAT GAATTTGTGA AGATGATGAT GACCGTTGGA TGA

>Vigan.08G365800.01
MADVLSEEQI GEIKEAFGLF DRDGDGCITV EELATVIRSL DQNPTEEELQ DMINEVDADG NGTIEFVEFL NLMAKKMKES
DAEEDLKEAF KVFDKDQNGY ISASELRHVM INLGEKLSDE EVEQMIKEAD LDGDGQVNYD EFVKMMMTVG *