GBrowse Details

Vigan.08G359900.01

Basic Information:
Name: Vigan.08G359900.01
Multiple alignment
Variant Information
Position: Chr08:45924574..45926711 (+ strand)
Length: 2138
Functional Information:
Description: Similar to Serine/threonine-protein phosphatase. [V7BIQ6, Phaseolus vulgaris]
GO: Molecular Function: hydrolase activity (GO:0016787)
InterPro: Phosphoesterase domain (IPR004843)
Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (IPR006186)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.65,0.10,10.15,2.98,0.22,6.05,1.11,4.77
Arabidopsis thaliana homolog: AT2G39840.1, AT5G43380.1
Automatic updates:
Name: NM_001255736 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max serine/threonine-protein phosphatase PP1-like (LOC100813763), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:45924574..45924666 (+ strand)
Length: 93
Type: five_prime_UTR
Position: Chr08:45924667..45924841 (+ strand)
Length: 175
Type: CDS
Position: Chr08:45925269..45925828 (+ strand)
Length: 560
Type: CDS
Position: Chr08:45925923..45926120 (+ strand)
Length: 198
Type: CDS
Position: Chr08:45926298..45926333 (+ strand)
Length: 36
Type: CDS
Position: Chr08:45926334..45926711 (+ strand)
Length: 378
Type: three_prime_UTR

>Vigan.08G359900.01 class=Sequence position=Chr08:45924574..45926711 (+ strand)
CTTATATAAG ACTCAACAAC ATAAGTTTCC TGGTCTCTGC TTTTCCCTTC TTGCATTGGT GTTCTTTGCT TTTGTTGGTT
ATCTTTGAGG GCAATGGAAC GTGGAGTTCT TGATGGCATA ATCAATAGAC TGCTTCAAGT CAGAGGGAGA CCAGGGAAAC
AGGTGCAGCT CTCAGAGGGA GAAATCAAAC AGCTTTGTAT GGTTTCTAGG GATATCTTCT TGAAGCAGCC CAATCTCTTA
GAACTTGAGG CACCAATTAA GATATGTGGT ATCTATTTGC TTTCCCATTT TCTTTCCTTC TAATTTTATA TGTTCTTTAG
TTTCTTACTC GGTTTCAGTA TATGGTCATC AACTTTTCTG TGGAAGAAAT GGTGACACTG GTGTTAGATT CTGTAATCTC
ATGCATAGTA TTCAAATCTG TCACTAGATA AGTTGTAATG ATTTTGAGGA TGGTTTAGAA TACAATTTGG GATGAGAAAA
AGCTGTCCCT TTGATTTTGA AGCATATTGT TCATGGGAAA GAAAGATAAT GTATATGAGC ATAGTGAAAC AGATAAATAG
AAAAGAAAAA CTGTTTGATG TACAAAACTA TTCTCAGTTG TAGAAAGAAG CCATGTTTCT CAGTTAAGTT TTTTTGTTAC
GAGTACAAGG TAGGAGAAAA AACTGATATC TTGTTTCATT TCACTGTGTT ACCAGGAGAC ATCCATGGTC AATATTCTGA
CCTTCTAAGA CTTTTTGAGC ATGGTGGTTT GCCTCCTCGC TCCAACTACT TATTCTTAGG TGATTATGTG GACCGTGGAA
AGCAAAGTCT AGAGACAATA TGTCTTCTTT TGGCCTACAA GATGAAGTAC CCTGAGAACT TTTTCCTTCT TAGGGGAAAC
CATGAATGTG CTTCCATAAA CCGTGTCTAT GGGTTCTATG ATGAATGTAA ACGAAGATTC AATGTCAAGC TGTGGAAAAT
ATTCGCAGAT TGCTTCAACT GCATGCCTGT GGCAGCCATC ATTGATGAAA AAATCTTCTG CATGCATGGA GGACTCTCTC
CCGAACTGCA CAATCTAAGT CAGATAAACT CTTTGCCACG TCCAACAGAA GTACCTGACA GTGGTCTACT CTGTGATCTC
TTGTGGTCTG ATCCTAGTAA AGACTCCGAG GGTTGGGGAG AGAGTCAACG TGGAGTTTCA TACACTTTTG GTGCCAGCTT
GGTCACACAA TTTCTTGGAA AGCATGATCT TGACTTGATT TGTAGAGCAC ACCAGGTTTT TATATGCTTT TGCTTTTGCA
AATTTTGAGT TTACAATTGT GAAAAGTGTT CAAGTGTTGT GTAATATGCT TGTGTGTTTC TTTCTCTAGG TTGTTGAGGA
TGGATATGAG TTTTTTGCTA ATAGACAACT TGTGACTATC TTTTCTGCTC CTAACTACTG TGGAGAGTTT GACAATGCTG
GAGCTATGAT GACTGTCGAT GAGACACTTA TGTGCTCTTT TCAGATACTG AGGCCAGTGG AAAACAGAAA GCCTAAGTTT
GGTTTTGGGA GCAAAACTTC ATTCAAGGCT AGTTCTCTTT ACAAAAGTCT TGATCTTTTA GTTCTTGAAT CATGTTGGTG
TACATTTTTC TGGTAGTTTC TTGTTGTTAG ATGTGGAACC AGTTCGATGA ATCCATCAAA TTTTTCTATC AAAAACACTG
CACAAAATCG TTCTGAGTTG TGTATTTCTT TCCTTTTGAA GCAGGCAATT CTTGATGCTG CAAGAGTACG TCCTCATTGA
GCTGACTTAG ACCAATAATA AAGTTTGTAA CATAACTAAA TTGACTTGAA CAAAGTCACA ACTCTGTTCA CTTCAATGTG
AAGGAAGATT TCAACCAGCA GTGCAAGTTG AGGTCTATGA AGAACATAGG AAAATTTATG TTTTCTTTTT AGTATAGCTC
AATGTCTTTT TATGTGCTGG AACATTCTCA TCATGTACAA TGTTGCCACC ACAATTTGAG GGGTCAGGTT TCACTTTTCC
TTTGTTTCAG TTTTTTTATG TGAGAGACAG TTATATGTCC ACTGTTGTAT TATAAATGGC AGCATATGCA TTTTGGCTTT
CTTTCCTGTT ACAGCAATTC ATTGTTTCAA TATGATAACA TGTTATTTGT GCTATAAA

>Vigan.08G359900.01
CTTATATAAG ACTCAACAAC ATAAGTTTCC TGGTCTCTGC TTTTCCCTTC TTGCATTGGT GTTCTTTGCT TTTGTTGGTT
ATCTTTGAGG GCAATGGAAC GTGGAGTTCT TGATGGCATA ATCAATAGAC TGCTTCAAGT CAGAGGGAGA CCAGGGAAAC
AGGTGCAGCT CTCAGAGGGA GAAATCAAAC AGCTTTGTAT GGTTTCTAGG GATATCTTCT TGAAGCAGCC CAATCTCTTA
GAACTTGAGG CACCAATTAA GATATGTGGA GACATCCATG GTCAATATTC TGACCTTCTA AGACTTTTTG AGCATGGTGG
TTTGCCTCCT CGCTCCAACT ACTTATTCTT AGGTGATTAT GTGGACCGTG GAAAGCAAAG TCTAGAGACA ATATGTCTTC
TTTTGGCCTA CAAGATGAAG TACCCTGAGA ACTTTTTCCT TCTTAGGGGA AACCATGAAT GTGCTTCCAT AAACCGTGTC
TATGGGTTCT ATGATGAATG TAAACGAAGA TTCAATGTCA AGCTGTGGAA AATATTCGCA GATTGCTTCA ACTGCATGCC
TGTGGCAGCC ATCATTGATG AAAAAATCTT CTGCATGCAT GGAGGACTCT CTCCCGAACT GCACAATCTA AGTCAGATAA
ACTCTTTGCC ACGTCCAACA GAAGTACCTG ACAGTGGTCT ACTCTGTGAT CTCTTGTGGT CTGATCCTAG TAAAGACTCC
GAGGGTTGGG GAGAGAGTCA ACGTGGAGTT TCATACACTT TTGGTGCCAG CTTGGTCACA CAATTTCTTG GAAAGCATGA
TCTTGACTTG ATTTGTAGAG CACACCAGGT TGTTGAGGAT GGATATGAGT TTTTTGCTAA TAGACAACTT GTGACTATCT
TTTCTGCTCC TAACTACTGT GGAGAGTTTG ACAATGCTGG AGCTATGATG ACTGTCGATG AGACACTTAT GTGCTCTTTT
CAGATACTGA GGCCAGTGGA AAACAGAAAG CCTAAGTTTG GTTTTGGGAG CAAAACTTCA TTCAAGGCAA TTCTTGATGC
TGCAAGAGTA CGTCCTCATT GAGCTGACTT AGACCAATAA TAAAGTTTGT AACATAACTA AATTGACTTG AACAAAGTCA
CAACTCTGTT CACTTCAATG TGAAGGAAGA TTTCAACCAG CAGTGCAAGT TGAGGTCTAT GAAGAACATA GGAAAATTTA
TGTTTTCTTT TTAGTATAGC TCAATGTCTT TTTATGTGCT GGAACATTCT CATCATGTAC AATGTTGCCA CCACAATTTG
AGGGGTCAGG TTTCACTTTT CCTTTGTTTC AGTTTTTTTA TGTGAGAGAC AGTTATATGT CCACTGTTGT ATTATAAATG
GCAGCATATG CATTTTGGCT TTCTTTCCTG TTACAGCAAT TCATTGTTTC AATATGATAA CATGTTATTT GTGCTATAAA

>Vigan.08G359900.01
ATGGAACGTG GAGTTCTTGA TGGCATAATC AATAGACTGC TTCAAGTCAG AGGGAGACCA GGGAAACAGG TGCAGCTCTC
AGAGGGAGAA ATCAAACAGC TTTGTATGGT TTCTAGGGAT ATCTTCTTGA AGCAGCCCAA TCTCTTAGAA CTTGAGGCAC
CAATTAAGAT ATGTGGAGAC ATCCATGGTC AATATTCTGA CCTTCTAAGA CTTTTTGAGC ATGGTGGTTT GCCTCCTCGC
TCCAACTACT TATTCTTAGG TGATTATGTG GACCGTGGAA AGCAAAGTCT AGAGACAATA TGTCTTCTTT TGGCCTACAA
GATGAAGTAC CCTGAGAACT TTTTCCTTCT TAGGGGAAAC CATGAATGTG CTTCCATAAA CCGTGTCTAT GGGTTCTATG
ATGAATGTAA ACGAAGATTC AATGTCAAGC TGTGGAAAAT ATTCGCAGAT TGCTTCAACT GCATGCCTGT GGCAGCCATC
ATTGATGAAA AAATCTTCTG CATGCATGGA GGACTCTCTC CCGAACTGCA CAATCTAAGT CAGATAAACT CTTTGCCACG
TCCAACAGAA GTACCTGACA GTGGTCTACT CTGTGATCTC TTGTGGTCTG ATCCTAGTAA AGACTCCGAG GGTTGGGGAG
AGAGTCAACG TGGAGTTTCA TACACTTTTG GTGCCAGCTT GGTCACACAA TTTCTTGGAA AGCATGATCT TGACTTGATT
TGTAGAGCAC ACCAGGTTGT TGAGGATGGA TATGAGTTTT TTGCTAATAG ACAACTTGTG ACTATCTTTT CTGCTCCTAA
CTACTGTGGA GAGTTTGACA ATGCTGGAGC TATGATGACT GTCGATGAGA CACTTATGTG CTCTTTTCAG ATACTGAGGC
CAGTGGAAAA CAGAAAGCCT AAGTTTGGTT TTGGGAGCAA AACTTCATTC AAGGCAATTC TTGATGCTGC AAGAGTACGT
CCTCATTGA

>Vigan.08G359900.01
MERGVLDGII NRLLQVRGRP GKQVQLSEGE IKQLCMVSRD IFLKQPNLLE LEAPIKICGD IHGQYSDLLR LFEHGGLPPR
SNYLFLGDYV DRGKQSLETI CLLLAYKMKY PENFFLLRGN HECASINRVY GFYDECKRRF NVKLWKIFAD CFNCMPVAAI
IDEKIFCMHG GLSPELHNLS QINSLPRPTE VPDSGLLCDL LWSDPSKDSE GWGESQRGVS YTFGASLVTQ FLGKHDLDLI
CRAHQVVEDG YEFFANRQLV TIFSAPNYCG EFDNAGAMMT VDETLMCSFQ ILRPVENRKP KFGFGSKTSF KAILDAARVR
PH*