GBrowse Details

Vigan.08G327200.01

Basic Information:
Name: Vigan.08G327200.01
Multiple alignment
Variant Information
Position: Chr08:42310382..42314909 (- strand)
Length: 4528
Functional Information:
Description: Similar to transcription initiation factor IIB-like. [XP_004304334.1, Fragaria vesca subsp. vesca]
GO: Biological Process: DNA-dependent transcription, initiation (GO:0006352)
Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: TBP-class protein binding (GO:0017025)
InterPro: Transcription factor TFIIB (IPR000812)
Zinc finger, TFIIB-type (IPR013137)
Transcription factor TFIIB, cyclin-like domain (IPR013150)
Cyclin-like (IPR013763)
Transcription factor TFIIB, conserved site (IPR023486)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:830.68,320.43,37.26,26.89,37.72,59.3 4,30.06,32.49
Arabidopsis thaliana homolog: AT2G41630.1, AT3G10330.1
Automatic updates:
Name: NM_001251414 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transcription factor TFIIB (TFIIB1), mRNA.
PubMed ID: 8811869 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:42310382..42310648 (- strand)
Length: 267
Type: three_prime_UTR
Position: Chr08:42310649..42310782 (- strand)
Length: 134
Type: CDS
Position: Chr08:42310971..42311047 (- strand)
Length: 77
Type: CDS
Position: Chr08:42311659..42311747 (- strand)
Length: 89
Type: CDS
Position: Chr08:42311868..42311998 (- strand)
Length: 131
Type: CDS
Position: Chr08:42312091..42312220 (- strand)
Length: 130
Type: CDS
Position: Chr08:42314070..42314094 (- strand)
Length: 25
Type: CDS
Position: Chr08:42314410..42314762 (- strand)
Length: 353
Type: CDS
Position: Chr08:42314763..42314909 (- strand)
Length: 147
Type: five_prime_UTR

>Vigan.08G327200.01 class=Sequence position=Chr08:42310382..42314909 (- strand)
CTATAAATAG AGAAAACGCA GCGAAGTTCC CCTCGCTGCA GTTCTTGGCT GTTTCTCTTT CTCTCTCTTT CTCTCTCTCT
CAAAAACACT CTCCGCGTGC AAACAGAGTC TCCTGCATTG TATTGGAACC TTGAGAGAAG GAAGAAGATG TCAGACGCGT
TCTGCAGCGA CTGCAAGAAG CAGACGGAGG TTGTGTTCGA CCACTCCGCC GGCGACACCG TCTGCTCCGA GTGCGGCCTC
GTCCTCGAGT CCCACTCCAT CGACGAGACC TCCGAGTGGC GTACCTTCGC CAACGAGTCG GGCGATAACG ACCCCAACCG
TGTCGGCGGT CCCTCTAACC CTCTTCTCAC CGACGGCGGC CTGTCTACCG TCATCGCCAA GCCCAACGGC TCCGGCGGCG
AGTTCCTCTC CTCCTCCCTC GGCCGCTGGC AGAACCGCGG TTCCAACCCC GATCGCGCCC TCATCCTGGC TTTCAAGACC
ATCGCCACCA TGTCCGACAG GTCACTTCCT AGGGTTCCAA TCCAGATCCC CATCTTATAC TATATTTTTT AATTTTGACC
TCACTCAACA AATCAATTAA ATGAATAAAT GAATGAATCC AGAACGTGAA CTGTCATATC AGTGTTTCGG GGGATTGGTA
TCATACGAGT CATGATCCTT GCTTCCATAT GAGGTCTAAT GTCGTTTTAT GTTTTATTGT ACTTTTTTAA AACGATTACC
TCTTGTTGGC TTTGTTTTTA AGTTTTTATC GTGAAATGTG ATTTTTGTAA TGTTTATGAT TGAGGGATTG GCTAATGTGG
TTGATGATTT TGCAGGTTGG GACTGGTTGC GACCATCAAG GTATGTTGTG TTCTTGTTTC CGACAGTTTT TCTCTCTCTC
TCTCTTTTTT TTTTTTTTTT AATTTTTAGG TCATTAGAAG ATTCTTGAAA CTGCGTATGT GTTTGTGTCT AATAGCCTGT
TTGGATACAG AACTTGAAGT CTGTTTGACA GCTTTTGGGA GCTTCTTTGT TATAGAAAGT TCTATGTTTT TAGCAGAGAA
GTGCTCAAAG GCACTTTTAA CTTGTTTCCA AATAGGCCTT AATGAATATA TGCTGTGGTT GTGAGTGAGG TTTGAACCAC
GGGTGCAGAG CTTGTTGAAC TTGAAGATGT ATTGAACTAA ATTAAGTCGG TTATTCTATG GAGTTTTATG TCCATGTAAA
TGTTAATTGA ACTAGGCTAT TTTGATAAGA TTCGTTCTCA TGCTTAGTGA AGTAAGCTAA AAAGAGATGA CAGGGGACTC
ACAAAACCGT GTATTTTTGT ATCCACTGCG TGGTTGTTAT GATTGGAATT GTGGTTTGGA TTTTGATTGG AAAGTTAACC
GAAATTTTAG TGTAGCCAAA TGAGTACCAT GTAACATTTG TGTGTAGATA GGGGCAATCA TTGCACATGG AAGGTACTGT
GCTTTAGGTT GTGTGGATGT TAGTGTTGAA GGTAATTATG GTGAAACAAG CAGCTGCATT ATTAGTAAGG GGATATTAAC
TTGAAGTCTT CATTTTATCT ATCTGCTTTG ATTACATAAC AAGTTCCATT AACTTGTGAA TATCCTTATA CACTGTATAT
GATCATTGCT GTCGGTATAA TTAAGTCTTA GGCTTTCAAG CTCAAACAGA AATACAAAGT TTATTGAAAC TTTGTAATTG
TGCCAGCTAC CTCATTGTAT AGATTTTTGT TGAGTTACAT GGTGTTCAAT TACATTTTAA TGGTACAGTT AAGGTTGTTT
TATTATGGCC TTCCGTAATT GTTGCTAGTG TAGTAGAATG CTATTAGGAA CCTCAGAAGG TTCAGTTCCT ATAGCTGGTT
TAGGTGCTAC CCCTTTATTG AGCTCGTTGC CTTTGGAACT TTGGAAAGAC TTCTTGTCAG ACGAGGCATG TTTTACTTAC
TAGAAACTAG AATCCAAATA TGTGGGATTG GGATCAATAC TTCCCCCCTC CAAAACCAAA TGCATGGAAC CCATAGGGCA
GAAGGGCTAA TTTTATAACC TAAATTTTAT TTACTCTGCA TTTTTCTCTT TGTAGTGTTA GTACTCAGTG AGGTATGTGA
TTTTTTTCTC CTTCATAGAA TCTTCTCATG TGCACTTTGT TAATGATGCT AGTCTTATAT TTTAACCTAA ATTTTATTTA
CTTTGAATGT TTATCTTGTG TTGTTAATAT ATATGGCAGT TTGCTTTTTT CTCTTTGTTG TGTACACTTC TTACCTCGAT
GAGGTGTGTC TTTGCAGCAT CTTTTGGTTC AGGGCTTTAT AATCCTCCTA GGCCAGGGTC ACTTCGTGTG CACCTGGTTC
ATGATGCTTG ATCTATGTTA CAAAAGTTGT AGGAGCCCGA AATAAGTTTT TTCTATTGTA AAATTAGTGG GTTAGAACAT
AAGTGCCTTC CTGAATATGT GACCTATATT TTCAAAGCGA TTAGTATGGC TATCTGCAAC TTGACTTGGG GAAAGGACTG
GATTACGATT TGGCAGTCCT CATCTCATGT CATGTCAAGC TTCTAAGAAC CAAGTTTATA TAATCCTTTC ATTGTCTCAA
TTTAATTTTG AAACCTTCAT TTTAATTTTT CTTGTCCATC TTTCATTTTA ATTTTTCTTG TCCATCTTCT ACTTATTTCT
CATGTAAAAT TAATATATTC ACTTTTTTTG TTTTTTTATT GGTTTGAAGG ATCGGGCTAA TGAGATATAT AAGAGGGTTG
AAGATCAAAA GTCTAGTAGA GGAAGAAATC AGGATGCTTT ATTGGCTGCT TGTCTCTACA TTGCTTGCCG ACAAGAAGAC
AAACCTCGTA CTGTTAAGGG TACTGCTTAT GATTCTTTTA ACATCTGGAT GCTTGCCAAT TTATCTTTCT GTATGTAAAT
AAGCTTCCCT GAACCTATGG ATTTCAACTA GAAATTTGCT CTGTTGCCAA TGGGGCCACA AAGAAGGAAA TTGGCCGAGC
AAAAGAGTAC ATAGTAAAAC AGCTGGGTTT GGAGAATGGT CAGTCTGTGG AGATGGGTAC AATACATGCA GGGGACTTTA
TGGTGAGTTT TCTCTATTAA TATTACATGC ATAGCTTTTT ATTTTTCTAC ATGTATTTGT GGAGCTAATT TATCTCAATA
TTTTCTATTA ATGTTGCTGA CCAATTTCAT CTCAAACATC AGAGGCGATT CTGTTCTAAT CTTGGTATGA ATAATCAAGC
TGTTAAAGCT GCTCAGGAAG CTGTGCAGAA ATCAGAAGAA TTTGATATAA GGTATATTTA CTTTATTTCA TCTCAATATA
GAGTTTGTAA TAGGTTGGTT GTTCACAGCT GAAGTCTGGT TTGTCCCATT TATTACATTA CACTTTTAGT ACTAAATGTC
TAGTTTCAGC CAAAGGACTT TACTCATTTT TTCTCTGAGA GGAAAACACG GTGGCTAAAA TTGACACAGT AGAGTGATAC
TATGAAATAA CATATCAGCT TAATAAGGTC AGGGTATTAT AAATTGTCTA GATCGAATAT CTGCTAAGGT GTCAAACTTT
CCTGTTTTCC GTGGAGAACA TGGTTACGGT CAGATTGTGG ATTAGAAGAA ACCTGCAGGT TTTACATGAT GTGTGCTGCA
TCTGGGTAAG AAGTGGAAGC TGAGGAATCG GGGTCATGTT TGTAAGAAGT GGGACCTCTT AGGTGTGCTA TGCAAAAATA
ACGCGTGTTT TTTCATGATG TGGAAACACC GAAGATTGTA TTGCATGTAA TTTTGATTTT ATCAGCCAAA ATAACTGTAT
TGCCCTCTGC ATGTGTAGCT CTCACCAACC AGTTTTAGCT TTCATCATAT TCAGAGATGT ACGTTATGAT ACTAATGAAC
ATATCTTTCT GCAATTTTTC AGGAGGAGTC CCATATCAAT TGCTGCAGCA GTTATATATA TCATAACTCA GCTTTCTGAT
GATAAGAAGC CTCTTAAAGG TTTGTGACAC TCCACTCCTT AGAGGGTAAC CTGGGGTTTG GGGGCATGGA GGACAAACTC
ATGTGAATGG GTTATGTGTT CATCTCTTCA ATTTGATAGG TTTTTATTTG AAAATATATT TGAAACGAGT ATCTTCTGAA
TTCCCATGAA TCCGACAATT GCATTCTGAC AGCTTGTGTT AATGCAGATA TATCAATTGC CACAGGCGTT GCTGAAGGAA
CGATTAGGAA CTCCTACAAG GATCTTTACC CCCATGTTTC AAAAATAATA CCAAATTGGT ATGCGAAGGA GGAGGATTTA
AGGAGCCTTT GCAGCCCTTG AATTGTAGAG CAAAACATTA CCATCAATAT TTTAACAAGT TAAAAGTTAT GTCATTAGAG
AGCATTTTGT TTCCTATGTA ACTGAACTGT TTATTAAAAA ATCGAAGTGC CTTTTTTTTA TGAGTTGTCA TTCATTGCCG
TGATTTGCAC CATTTTTTTA GACCCTCCTA ATCTGAGTTC TCGTTGGGAG CGAGGCAACA ATGTATGAAT TTCTCGACTC
TTGCTAAAAC ATCATAGGCT TCTTTTTTAT GCTGTCATCG CTGCTTTC

>Vigan.08G327200.01
CTATAAATAG AGAAAACGCA GCGAAGTTCC CCTCGCTGCA GTTCTTGGCT GTTTCTCTTT CTCTCTCTTT CTCTCTCTCT
CAAAAACACT CTCCGCGTGC AAACAGAGTC TCCTGCATTG TATTGGAACC TTGAGAGAAG GAAGAAGATG TCAGACGCGT
TCTGCAGCGA CTGCAAGAAG CAGACGGAGG TTGTGTTCGA CCACTCCGCC GGCGACACCG TCTGCTCCGA GTGCGGCCTC
GTCCTCGAGT CCCACTCCAT CGACGAGACC TCCGAGTGGC GTACCTTCGC CAACGAGTCG GGCGATAACG ACCCCAACCG
TGTCGGCGGT CCCTCTAACC CTCTTCTCAC CGACGGCGGC CTGTCTACCG TCATCGCCAA GCCCAACGGC TCCGGCGGCG
AGTTCCTCTC CTCCTCCCTC GGCCGCTGGC AGAACCGCGG TTCCAACCCC GATCGCGCCC TCATCCTGGC TTTCAAGACC
ATCGCCACCA TGTCCGACAG GTTGGGACTG GTTGCGACCA TCAAGGATCG GGCTAATGAG ATATATAAGA GGGTTGAAGA
TCAAAAGTCT AGTAGAGGAA GAAATCAGGA TGCTTTATTG GCTGCTTGTC TCTACATTGC TTGCCGACAA GAAGACAAAC
CTCGTACTGT TAAGGAAATT TGCTCTGTTG CCAATGGGGC CACAAAGAAG GAAATTGGCC GAGCAAAAGA GTACATAGTA
AAACAGCTGG GTTTGGAGAA TGGTCAGTCT GTGGAGATGG GTACAATACA TGCAGGGGAC TTTATGAGGC GATTCTGTTC
TAATCTTGGT ATGAATAATC AAGCTGTTAA AGCTGCTCAG GAAGCTGTGC AGAAATCAGA AGAATTTGAT ATAAGGAGGA
GTCCCATATC AATTGCTGCA GCAGTTATAT ATATCATAAC TCAGCTTTCT GATGATAAGA AGCCTCTTAA AGATATATCA
ATTGCCACAG GCGTTGCTGA AGGAACGATT AGGAACTCCT ACAAGGATCT TTACCCCCAT GTTTCAAAAA TAATACCAAA
TTGGTATGCG AAGGAGGAGG ATTTAAGGAG CCTTTGCAGC CCTTGAATTG TAGAGCAAAA CATTACCATC AATATTTTAA
CAAGTTAAAA GTTATGTCAT TAGAGAGCAT TTTGTTTCCT ATGTAACTGA ACTGTTTATT AAAAAATCGA AGTGCCTTTT
TTTTATGAGT TGTCATTCAT TGCCGTGATT TGCACCATTT TTTTAGACCC TCCTAATCTG AGTTCTCGTT GGGAGCGAGG
CAACAATGTA TGAATTTCTC GACTCTTGCT AAAACATCAT AGGCTTCTTT TTTATGCTGT CATCGCTGCT TTC

>Vigan.08G327200.01
ATGTCAGACG CGTTCTGCAG CGACTGCAAG AAGCAGACGG AGGTTGTGTT CGACCACTCC GCCGGCGACA CCGTCTGCTC
CGAGTGCGGC CTCGTCCTCG AGTCCCACTC CATCGACGAG ACCTCCGAGT GGCGTACCTT CGCCAACGAG TCGGGCGATA
ACGACCCCAA CCGTGTCGGC GGTCCCTCTA ACCCTCTTCT CACCGACGGC GGCCTGTCTA CCGTCATCGC CAAGCCCAAC
GGCTCCGGCG GCGAGTTCCT CTCCTCCTCC CTCGGCCGCT GGCAGAACCG CGGTTCCAAC CCCGATCGCG CCCTCATCCT
GGCTTTCAAG ACCATCGCCA CCATGTCCGA CAGGTTGGGA CTGGTTGCGA CCATCAAGGA TCGGGCTAAT GAGATATATA
AGAGGGTTGA AGATCAAAAG TCTAGTAGAG GAAGAAATCA GGATGCTTTA TTGGCTGCTT GTCTCTACAT TGCTTGCCGA
CAAGAAGACA AACCTCGTAC TGTTAAGGAA ATTTGCTCTG TTGCCAATGG GGCCACAAAG AAGGAAATTG GCCGAGCAAA
AGAGTACATA GTAAAACAGC TGGGTTTGGA GAATGGTCAG TCTGTGGAGA TGGGTACAAT ACATGCAGGG GACTTTATGA
GGCGATTCTG TTCTAATCTT GGTATGAATA ATCAAGCTGT TAAAGCTGCT CAGGAAGCTG TGCAGAAATC AGAAGAATTT
GATATAAGGA GGAGTCCCAT ATCAATTGCT GCAGCAGTTA TATATATCAT AACTCAGCTT TCTGATGATA AGAAGCCTCT
TAAAGATATA TCAATTGCCA CAGGCGTTGC TGAAGGAACG ATTAGGAACT CCTACAAGGA TCTTTACCCC CATGTTTCAA
AAATAATACC AAATTGGTAT GCGAAGGAGG AGGATTTAAG GAGCCTTTGC AGCCCTTGA

>Vigan.08G327200.01
MSDAFCSDCK KQTEVVFDHS AGDTVCSECG LVLESHSIDE TSEWRTFANE SGDNDPNRVG GPSNPLLTDG GLSTVIAKPN
GSGGEFLSSS LGRWQNRGSN PDRALILAFK TIATMSDRLG LVATIKDRAN EIYKRVEDQK SSRGRNQDAL LAACLYIACR
QEDKPRTVKE ICSVANGATK KEIGRAKEYI VKQLGLENGQ SVEMGTIHAG DFMRRFCSNL GMNNQAVKAA QEAVQKSEEF
DIRRSPISIA AAVIYIITQL SDDKKPLKDI SIATGVAEGT IRNSYKDLYP HVSKIIPNWY AKEEDLRSLC SP*