GBrowse Details

Vigan.08G318500.01

Basic Information:
Name: Vigan.08G318500.01
Multiple alignment
Variant Information
Position: Chr08:41016552..41020162 (+ strand)
Length: 3611
Functional Information:
Description: Similar to Uncharacterized protein. [I1N8N8, Glycine max]
GO: Molecular Function: nucleic acid binding (GO:0003676)
InterPro: Single-stranded nucleic acid binding R3H (IPR001374)
SUZ domain (IPR024771)
R3H domain-containing protein, viridiplantae (IPR024773)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:336.32,113.37,37.93,64.55,47.10,55.9 2,50.02,30.88
Arabidopsis thaliana homolog: AT3G56680.1
Automatic updates:
Name: NM_001254399 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100784326 (LOC100784326), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254399 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max R3H and SUZ domain-containing protein (LOC100784326), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:41016552..41016845 (+ strand)
Length: 294
Type: five_prime_UTR
Position: Chr08:41016846..41016957 (+ strand)
Length: 112
Type: CDS
Position: Chr08:41018214..41018835 (+ strand)
Length: 622
Type: CDS
Position: Chr08:41019304..41019586 (+ strand)
Length: 283
Type: CDS
Position: Chr08:41019934..41019984 (+ strand)
Length: 51
Type: CDS
Position: Chr08:41019985..41020162 (+ strand)
Length: 178
Type: three_prime_UTR

>Vigan.08G318500.01 class=Sequence position=Chr08:41016552..41020162 (+ strand)
TTTTCACATC GAAGATTTGC GTAACTTTAT ATATATATAT ATTTTCCGTT GTTTTCATCT AAAATTTCTC TTTCTCTCCT
TATTGCTGGA GAGAGAAACA GAGAGAGGTG GAGAAAAACC CAAGAGCCTC TTTTTCCCTA TCTCTTCTCT ATGTCAGGCC
ACAAGCACAA CTCCTTCACG TTTTCTTCTT CCTTCTGACT AATATCAGAA GGAAACCCAA AAAAAGGCAG AACCTTCTAG
AAGCCGCCGT TTTCTTTTAT CTCTCTCAGT CACAAGAGGT TTCTTCTTGA CGCCATGGAT TCCTCCTTTA TCTCAAACGC
CGACGTTTCT GCTTTCAAAG ATAAGGAGTC AATGGTTGAC CCTTTCTTGG TTGAGGCGCT TCAGAACCCT CGTCATCGTG
TCACCAGTCA GTGCTCTCTC CCTCTTTTTC TCTCAATTTT TAATTTCGGA ACCTTTTTTT TGTCGTTTGT GAATTTCTTT
TGCTTGAGTT CTTTGTTCGC TATTTTTATT TCTCTGCTCT GTTTAATGGG TACGCATCAA AATTATAGCT TGAAGTGAAT
TTGTTTTTTT TATCTTTAAT TTGGATAGAT ATGACCCAAT TTTTATCAAT TTTGTTCTTA ATTTAGAGTT AGGGTTGTGG
GTAGGTTTTG TTGCGTCAGA TCTGGGATGA TTGGGATTAC CTTAGAAATT TCGAATCTGA ATATGATGTT CAATTATGAG
GAGTTGGTAT GGGAATGAGA CGTACAGACT CCTAGGTTGT TGAATTGTAC CCGTTTATGT TAGAGAAAAA ATGGTTTATG
ATAATAGAGC ATGATGGTAT AATTCCATTC CCATGAAGTA GTATAAGGCT TCGTTGTTGA TGTATTATGT GCCTATGCTC
TGTACAGATA ACTGCATAAT CCGAAGAAGA TGTATGTAGT CAAATATGTG TGGCTTCATG TAAATATTGT TGGATTGATT
TGGGATGATC GTAAAAGAAG CTGTAAATTC TGAGGTTATT GAAGTCAATT TTAGTGTAGA ACTAGCATGC ATATAATTTG
AGCTTTTAGG AAGATAGTAC CCACCATGGA CCAATTAATT GTAGCACTTC TCCTACCTAT CAAAGGTTTA ATCTTGTGTA
GAAATAGGGT TTAAGTGACA TGATACTGCA ATTGGTTGTA ATAATCTTGC TTTCAATAAT TTAGACAGCA TAGTGTTATA
ATTTGAAACT GTTAACTTCC ATCTTAATAT CATAATAATT CAACACTTGT AGTGAAGTCT GAAGCCTACA AAAATGTAAA
ATGCCAAGGG CCACAAATTC TGAAAATAGT GTATCTCTTG CTTTTCATTG GCGTCCATGA TATTTGTGGT CATGATTGTT
CCTAAATGAA CCGAGCCTGA GATTGAGTTG TTTCCCTTGT ACTGTAAGTA TGTAACTGGG TAGCCTAATT TGGTTGGTAG
AGGACGATTG GATTGGTACA TAGGAGAATT AATGAAAAGT ATAGGGGTTT TCTTTTGATC GTGTGTTGTC GTCATTCTTT
TTGTCATGAC TATAATTTCC CGCACTAATA TCTTTTTCTT GCTATCTTTT GAGTTATTTG TTTTTAGTTT TCATCCAATA
TGTAATTGTA CATCTTGACA TTTTCCTTTT TCATTACCTA CTATTTTGTT TCACTGCCGT AGTTTTGAGA ATGGAGCTGG
ATATCCAAAG ATTCCTGAAT AATGCTGATC AGCAGCATTT TGAATTTCAA CATTTCCCTT CTTCATATCT CAGACTGGCT
GCACATCGTG TTGCTCAACA CTATGGCATG CAAACAATGG TTCAAGATAA TGGTTTAGAT GGTCAGGTAA CCAGGATTAT
GGTCAGAAAG TTAGCTGAAA GCAGGTATCC TGTGGTCCGC TTGTCTGAAA TACCTGCTAA ACAGTTGGAA AATGATAAAC
CTGAGCAGAT AAAAATTGCC ATAAGGCCAA GGCCAAATGG AACCAGTTTA AATGAATCCA ATGAAGTTGG AAAGAAAAAC
AATCTTCTTA GAAGTGTGGA AGAGAGGAAG GAGGAATACG ATCGGGCACG AGCACGCATT TTTAGTAGCT CCAGAGGTTG
TGATTCAGAT GATAATCAGT CCCAGGCTTC AACAGAAGAG AAAAATTTTC TTACAGGCAA AGAAGAGAGT GAAACTAGCA
AGTCCCCTGT GGTTGATTCT GAAAAGTGGG CTACCGGTAG GGATATTAAT TCTACTCGAG TTGCCATATT CAGAGATAGG
GAAAAGGACC GTAGTGATCC AGATTATGAT CGTAACTATG GAAGGTTTGT TCTATGAATG CACTGTGTTA TTTGATTTTT
TGAGAGTTGT GTTAGCAATA TATGGAGAAA TTGCACATAT GGTTTTTCGC CTTTTGCTTC TATTATGTGC ATACTCAAAA
ATATGAACCT GTATTGCATT TATGTATCAG TGTCAACAGT TAGAACCACA CCACTAAGTT TTTCAGACAT TTTATTGTAA
TATTTGGTAG TGTGCGGCAG TTTTGCGTTG CAGTTGAAGC CCATATGAAA CCTAATATTC AGTCGTGCTT AAACATTATG
GAAATTGGGG CACTTTTCAA CTTGCCTGCT TTTTTCTCTC TATTTTTGTC CCCTCAGAAG ATTTTCATGT TTTTAACTCA
GCTGCTCCCT TTTCAACTTT CTACCGAATT TTTACTCGGC TGGTTATTTT AGTTGATTAT TAACTTTTAT TGTGAAGTTT
GTTTATCATA TTGTATCTCA ATACCAATGC AGGTATGCCA GGAGTATCCC ACCTTCTTCC CTTAATTTGA TACCTTTTAA
TTTGCAACAA GTTCAACCTC CATTCACGCA TTATGACGCT GCTTTTAATC AACTGAGTCA GATGCCACCA AATCAAGCTT
CGATTGGCTA TGGACCTCCT TCAAGTCCTA TGATGAACCC TTTTGGTGTC ACGGGACTGA ATCAGGCATC TAGTGATGTT
GCTTACCTGC AGTGGCCAAG TGCTTCAATG ATGTATGCAC ATTCATATGA CCAATTTAGA CATGCTATTT TCCAGGTAAT
CTGCAGCAAA TAATTTTTGT TTTGCTGTTG AATGTGAACA ATGGTGTTTA GTTCCTATTA TTTGAACATT AAAAACATTA
AATACCATAA ACGACACTGT ATGATTATCT TATAAATTTT TTTCTCTTTG TTACATACTG CTTATAGATT TTGCATTGTT
TGACTGGTTT ATTCATTAAA CTTCTACTAA TCAAATTGTT TTTGGGAGGA AGGTGAATGA AATAGATGTA CATTCAGGCA
AGGATAATAA AATTATTTCA TTAAGAGGGT TGTCACATTT TGTTTCCTTT TGATTGTAGA ATAGTGATTG TGTTATCTAA
TTGTTTTTTT GCTGCTTTGC AGGCTCCATT CGGTCAACGC CCATTGAGCT TTGATTATTC ACAAAATTAC TAGATGATGA
CGTTTAGGGG GCAGTTTTCC TTTTGGCTGC AGTTATTTTA GCTGTTGAGT TTCAGAGTTA GATACAATTT TTCTGCACTG
TTATAGAACC CATGTTCCTA TTTTAGGTTT TCCATTTTTA TGGTATGTGG TACTCTTCTA GTGACAGTTT TATATACTGA
ACTGTAGTGA A

>Vigan.08G318500.01
TTTTCACATC GAAGATTTGC GTAACTTTAT ATATATATAT ATTTTCCGTT GTTTTCATCT AAAATTTCTC TTTCTCTCCT
TATTGCTGGA GAGAGAAACA GAGAGAGGTG GAGAAAAACC CAAGAGCCTC TTTTTCCCTA TCTCTTCTCT ATGTCAGGCC
ACAAGCACAA CTCCTTCACG TTTTCTTCTT CCTTCTGACT AATATCAGAA GGAAACCCAA AAAAAGGCAG AACCTTCTAG
AAGCCGCCGT TTTCTTTTAT CTCTCTCAGT CACAAGAGGT TTCTTCTTGA CGCCATGGAT TCCTCCTTTA TCTCAAACGC
CGACGTTTCT GCTTTCAAAG ATAAGGAGTC AATGGTTGAC CCTTTCTTGG TTGAGGCGCT TCAGAACCCT CGTCATCGTG
TCACCATTTT GAGAATGGAG CTGGATATCC AAAGATTCCT GAATAATGCT GATCAGCAGC ATTTTGAATT TCAACATTTC
CCTTCTTCAT ATCTCAGACT GGCTGCACAT CGTGTTGCTC AACACTATGG CATGCAAACA ATGGTTCAAG ATAATGGTTT
AGATGGTCAG GTAACCAGGA TTATGGTCAG AAAGTTAGCT GAAAGCAGGT ATCCTGTGGT CCGCTTGTCT GAAATACCTG
CTAAACAGTT GGAAAATGAT AAACCTGAGC AGATAAAAAT TGCCATAAGG CCAAGGCCAA ATGGAACCAG TTTAAATGAA
TCCAATGAAG TTGGAAAGAA AAACAATCTT CTTAGAAGTG TGGAAGAGAG GAAGGAGGAA TACGATCGGG CACGAGCACG
CATTTTTAGT AGCTCCAGAG GTTGTGATTC AGATGATAAT CAGTCCCAGG CTTCAACAGA AGAGAAAAAT TTTCTTACAG
GCAAAGAAGA GAGTGAAACT AGCAAGTCCC CTGTGGTTGA TTCTGAAAAG TGGGCTACCG GTAGGGATAT TAATTCTACT
CGAGTTGCCA TATTCAGAGA TAGGGAAAAG GACCGTAGTG ATCCAGATTA TGATCGTAAC TATGGAAGGT ATGCCAGGAG
TATCCCACCT TCTTCCCTTA ATTTGATACC TTTTAATTTG CAACAAGTTC AACCTCCATT CACGCATTAT GACGCTGCTT
TTAATCAACT GAGTCAGATG CCACCAAATC AAGCTTCGAT TGGCTATGGA CCTCCTTCAA GTCCTATGAT GAACCCTTTT
GGTGTCACGG GACTGAATCA GGCATCTAGT GATGTTGCTT ACCTGCAGTG GCCAAGTGCT TCAATGATGT ATGCACATTC
ATATGACCAA TTTAGACATG CTATTTTCCA GGCTCCATTC GGTCAACGCC CATTGAGCTT TGATTATTCA CAAAATTACT
AGATGATGAC GTTTAGGGGG CAGTTTTCCT TTTGGCTGCA GTTATTTTAG CTGTTGAGTT TCAGAGTTAG ATACAATTTT
TCTGCACTGT TATAGAACCC ATGTTCCTAT TTTAGGTTTT CCATTTTTAT GGTATGTGGT ACTCTTCTAG TGACAGTTTT
ATATACTGAA CTGTAGTGAA 

>Vigan.08G318500.01
ATGGATTCCT CCTTTATCTC AAACGCCGAC GTTTCTGCTT TCAAAGATAA GGAGTCAATG GTTGACCCTT TCTTGGTTGA
GGCGCTTCAG AACCCTCGTC ATCGTGTCAC CATTTTGAGA ATGGAGCTGG ATATCCAAAG ATTCCTGAAT AATGCTGATC
AGCAGCATTT TGAATTTCAA CATTTCCCTT CTTCATATCT CAGACTGGCT GCACATCGTG TTGCTCAACA CTATGGCATG
CAAACAATGG TTCAAGATAA TGGTTTAGAT GGTCAGGTAA CCAGGATTAT GGTCAGAAAG TTAGCTGAAA GCAGGTATCC
TGTGGTCCGC TTGTCTGAAA TACCTGCTAA ACAGTTGGAA AATGATAAAC CTGAGCAGAT AAAAATTGCC ATAAGGCCAA
GGCCAAATGG AACCAGTTTA AATGAATCCA ATGAAGTTGG AAAGAAAAAC AATCTTCTTA GAAGTGTGGA AGAGAGGAAG
GAGGAATACG ATCGGGCACG AGCACGCATT TTTAGTAGCT CCAGAGGTTG TGATTCAGAT GATAATCAGT CCCAGGCTTC
AACAGAAGAG AAAAATTTTC TTACAGGCAA AGAAGAGAGT GAAACTAGCA AGTCCCCTGT GGTTGATTCT GAAAAGTGGG
CTACCGGTAG GGATATTAAT TCTACTCGAG TTGCCATATT CAGAGATAGG GAAAAGGACC GTAGTGATCC AGATTATGAT
CGTAACTATG GAAGGTATGC CAGGAGTATC CCACCTTCTT CCCTTAATTT GATACCTTTT AATTTGCAAC AAGTTCAACC
TCCATTCACG CATTATGACG CTGCTTTTAA TCAACTGAGT CAGATGCCAC CAAATCAAGC TTCGATTGGC TATGGACCTC
CTTCAAGTCC TATGATGAAC CCTTTTGGTG TCACGGGACT GAATCAGGCA TCTAGTGATG TTGCTTACCT GCAGTGGCCA
AGTGCTTCAA TGATGTATGC ACATTCATAT GACCAATTTA GACATGCTAT TTTCCAGGCT CCATTCGGTC AACGCCCATT
GAGCTTTGAT TATTCACAAA ATTACTAG

>Vigan.08G318500.01
MDSSFISNAD VSAFKDKESM VDPFLVEALQ NPRHRVTILR MELDIQRFLN NADQQHFEFQ HFPSSYLRLA AHRVAQHYGM
QTMVQDNGLD GQVTRIMVRK LAESRYPVVR LSEIPAKQLE NDKPEQIKIA IRPRPNGTSL NESNEVGKKN NLLRSVEERK
EEYDRARARI FSSSRGCDSD DNQSQASTEE KNFLTGKEES ETSKSPVVDS EKWATGRDIN STRVAIFRDR EKDRSDPDYD
RNYGRYARSI PPSSLNLIPF NLQQVQPPFT HYDAAFNQLS QMPPNQASIG YGPPSSPMMN PFGVTGLNQA SSDVAYLQWP
SASMMYAHSY DQFRHAIFQA PFGQRPLSFD YSQNY*