GBrowse Details

Vigan.08G313300.01

Basic Information:
Name: Vigan.08G313300.01
Multiple alignment
Variant Information
Position: Chr08:40289250..40291987 (- strand)
Length: 2738
Functional Information:
Description: Similar to H0315E07.2 protein. [Q01JF1, Oryza sativa]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:52.77,38.59,119.38,53.76,271.02,209. 91,139.27,59.85
Arabidopsis thaliana homolog: AT1G72020.1
Automatic updates:
Name: NM_001248278 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499985 (LOC100499985), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001248638 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500266 (LOC100500266), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:40289250..40289627 (- strand)
Length: 378
Type: three_prime_UTR
Position: Chr08:40289628..40289845 (- strand)
Length: 218
Type: CDS
Position: Chr08:40291645..40291717 (- strand)
Length: 73
Type: CDS
Position: Chr08:40291718..40291987 (- strand)
Length: 270
Type: five_prime_UTR

>Vigan.08G313300.01 class=Sequence position=Chr08:40289250..40291987 (- strand)
TTCAAACGTC TCTTGAACTT TTGTTTTCGA ATTTGTTTGT CTTAAATTTT AATTTACTTA GCTTAACCAA TAACCACTAA
CAGAGCCCAA TAAAAAAATG GGTTAAATTA AACTCAAATC GAAACAAAGA AGCAAAACAA GGAAGGGTTT TCAGAAGAGT
AGAGCCTAAC GGCGTGCGTA AAGCAAAGAC GAGACTGAAC GCAAAGGCGA GCGTGTAGGA AACCTATAAA ATTTCGAGCG
CGTGGCTTTC GAATCCAATC TGCGTTACCA ATGGCCTTCA ACAACGCACT CAGATCCGCC GCAAAACTCA TCGCTTCTTC
TGAATCTTCC ATCTCCACCT CAGGTCAAAT CCTCCCTTTC GATAATATTT TTGTGATTTG TAATTTGCAA ATCTTAATGC
AATTCGTTTT TGCTTTTACG ATGAGGTTCT TTATGGTTGT TATATGATGA ATTCGGTTAA GGATGCCGAG GATTCTGTGA
CGATGAGGTG TTTTTTTTTA TTGTTAGGGT TTTTATTTCA TAATAGAAAA GAAATGGTTG ATTTGCAGGT CACGATGTGT
TGAAGATTGT TTTTTTTTTT TTTTTTTTTT TCATAAATTT AATAAGTTTT ATAGGAAACT GTGAGTGGTG ACATACATAC
TTTGGGGATG AACGCAATCA GTGAGAGGAG AAAGTGTAGG GCTGGATTGA TGTGCAATTC GCGCTGTGTT CGTTTATATT
GATTGTGGAG TTTGAGGGGA GAGGTGTTGG CAGTGACCTT AGTTGATGGA TGTTTTCTAG TTGAATGTTG AAAACTGGAC
CAAGAGGCAG TGCAGGTTTG CGACTATCAC TTTTCTGGCT GTGTTCCTTG AGATTAGAGG AGGTTTAGCT TGGTGAATTT
CAAGTGGAGA ATGATTGGTG TTGATCACGT TAAATGGCGA AATAGTAATG CTTCAAACAA GGGAGCTGGA TAGAGATGAG
ACCATGTAAA CCTAGAACCA AAGGACTTCT TGTATCTGAT AATGTGTCCT TTTGTACTGC TTGGAAAGGG TGATGTTTGT
TGAGGTAGAA GGAGTTTTGG TTTTTGTTGC ATGTTTGCTG TTTTTTCTTT GTTTAGTTGT TCTTCTGCAT GTGGGAGGTA
TGGCTGCATA GTGCATACTT CTACCCTACA TAGACCCCTC TAATGTTGAG CTCCATGCAA TAGATTGTCG TCCCTCTCCT
CTTTTGGCTG CAAAATGTAT ACTGTTGGAT GAATTCAGAT ATGAGTTTAA TTTATAGTTA CAAATTCAAT TGGTTGTTGA
TAGTATGGAA GTGTTGCCTT TTGAAAGAAA TGTTATTAAA TGAAGGGAGG CAATTAAATC TTGTCTGTAG GATTTCTTTG
CAGGAAAGAC TGTTGGGAAT GCTTAAGCTT TTCTTTTTCT TGTTAATTGC TGTAAAATCA AATTTTCAAC TTTTCTGTAC
GTACCTGAGG CTTTTGTATA AATGTTTTGT CCTGTTAAAC TCACATTTAT AATCAGGTTT TAAGTTCCAA ATCCACTATT
GTATTTATTG GGCATTTAGT TTATTGAACG TTTGAGAGTT CGTAAGAGAA GGAATATAAA ACAAATGGAA GGGAAGAAGA
GAGAAGAAAA GGGGATGGAG TATTTAAGAG TAACTTTCCT TTCCTTTGTT AAATTATTTG TGATTGATTA CGTACGAACT
TTCGAGTCAA TGCATAATGC AGAAGTCTTG GTTAAAATTA AATGATGATT CTTCAATTAC TTCCTCTTAT CTCCAAAAAC
TCCCAAACAA AGGCCTTCTC TATCCAGATC TACCCTTAAA ATATATGTTG GATGTTTAGC GCCCACTGTT TCTTGTTCCA
GTTGCTACCT GAATTTGTTA TATTTATTAG GTTGCCATTT GAATTTTCTA TACTGTTTTC TTTTTTAACA TGATCGAAAA
TTGCTGTATA TTTAAGCTTG TCGATCCACT TACTGTGATA AGTGTGTAGA AAGTTGCATA TAAACACCCT TTTAGATCCT
TGGAAATTAG TTATTTAACA ATCCTTAACA TTTACTGATA TCCTTACACA CACAATTGCA TATCAATACC CATTTAGATT
CTTGGAAAGT CACTGTTTTC ATCAGAGATC CGCGTTCTTA CTGGAAAATA ATATGTTGAC AGTGAGCAGA GGTTTTCATT
CAACTCCCAT GAAGAGGATG GGGGGTGGAC ATGGCCATGA TGAGCCCTAT TATATTCATG CAAAACACAT GTACAACTTG
GACAGGATGA AGCACCGGGG GTTGAAAATG TCTCTTGCTG TATTCTCTGC TTTCAGCATT GGTGTTGCAG TTCCTGTGTA
TGCTGTCATT TTCCAGCAAA AGAAGACAGC TTCTGCCTAA CTCATCTTTC GCTTCATTTG CAACAATAAG GTGGATTTGG
GGATCCTAGA CTAGACTATT GGTTTTGGTG TTTATTATTG TTTTCAGCTT TGTTTATGTT CAACCACTAT GTGGATTTTC
CTGGTATATC TGATAATAAT CAATTTCTAT GCACATCTGT TTCATGCGAT TCATCAATTA TTGTTTGATA ATTTGGTTAG
TTGCATGCTT GCAATCAGTT CTCATCTGTA TCTTTGCATA TGGTAAGAAG GCCCAAAAAG CAGTAAAACC GAAGTGTTGT
ATTTATTTTG TTTTTATTTC GATTTTGAAG TAAATTGCAC AGCACATTTT TTTTAGGTGT TCAAGAAAAT GATAATTGCA
GAGGATTTGT TTGCTAAA

>Vigan.08G313300.01
TTCAAACGTC TCTTGAACTT TTGTTTTCGA ATTTGTTTGT CTTAAATTTT AATTTACTTA GCTTAACCAA TAACCACTAA
CAGAGCCCAA TAAAAAAATG GGTTAAATTA AACTCAAATC GAAACAAAGA AGCAAAACAA GGAAGGGTTT TCAGAAGAGT
AGAGCCTAAC GGCGTGCGTA AAGCAAAGAC GAGACTGAAC GCAAAGGCGA GCGTGTAGGA AACCTATAAA ATTTCGAGCG
CGTGGCTTTC GAATCCAATC TGCGTTACCA ATGGCCTTCA ACAACGCACT CAGATCCGCC GCAAAACTCA TCGCTTCTTC
TGAATCTTCC ATCTCCACCT CAGTGAGCAG AGGTTTTCAT TCAACTCCCA TGAAGAGGAT GGGGGGTGGA CATGGCCATG
ATGAGCCCTA TTATATTCAT GCAAAACACA TGTACAACTT GGACAGGATG AAGCACCGGG GGTTGAAAAT GTCTCTTGCT
GTATTCTCTG CTTTCAGCAT TGGTGTTGCA GTTCCTGTGT ATGCTGTCAT TTTCCAGCAA AAGAAGACAG CTTCTGCCTA
ACTCATCTTT CGCTTCATTT GCAACAATAA GGTGGATTTG GGGATCCTAG ACTAGACTAT TGGTTTTGGT GTTTATTATT
GTTTTCAGCT TTGTTTATGT TCAACCACTA TGTGGATTTT CCTGGTATAT CTGATAATAA TCAATTTCTA TGCACATCTG
TTTCATGCGA TTCATCAATT ATTGTTTGAT AATTTGGTTA GTTGCATGCT TGCAATCAGT TCTCATCTGT ATCTTTGCAT
ATGGTAAGAA GGCCCAAAAA GCAGTAAAAC CGAAGTGTTG TATTTATTTT GTTTTTATTT CGATTTTGAA GTAAATTGCA
CAGCACATTT TTTTTAGGTG TTCAAGAAAA TGATAATTGC AGAGGATTTG TTTGCTAAA

>Vigan.08G313300.01
ATGGCCTTCA ACAACGCACT CAGATCCGCC GCAAAACTCA TCGCTTCTTC TGAATCTTCC ATCTCCACCT CAGTGAGCAG
AGGTTTTCAT TCAACTCCCA TGAAGAGGAT GGGGGGTGGA CATGGCCATG ATGAGCCCTA TTATATTCAT GCAAAACACA
TGTACAACTT GGACAGGATG AAGCACCGGG GGTTGAAAAT GTCTCTTGCT GTATTCTCTG CTTTCAGCAT TGGTGTTGCA
GTTCCTGTGT ATGCTGTCAT TTTCCAGCAA AAGAAGACAG CTTCTGCCTA A

>Vigan.08G313300.01
MAFNNALRSA AKLIASSESS ISTSVSRGFH STPMKRMGGG HGHDEPYYIH AKHMYNLDRM KHRGLKMSLA VFSAFSIGVA
VPVYAVIFQQ KKTASA*