GBrowse Details

Vigan.08G299300.01

Basic Information:
Name: Vigan.08G299300.01
Multiple alignment
Variant Information
Position: Chr08:37906115..37908275 (+ strand)
Length: 2161
Functional Information:
Description: Similar to Uncharacterized protein. [B7FH64, Medicago truncatula]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Cellular Component: small ribosomal subunit (GO:0015935)
Molecular Function: RNA binding (GO:0003723)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein S3, C-terminal (IPR001351)
K Homology domain, type 2 (IPR004044)
Ribosomal protein S3, eukaryotic/archaeal (IPR005703)
K homology domain, prokaryotic type (IPR009019)
K homology domain-like, alpha/beta (IPR015946)
Ribosomal protein S3, conserved site (IPR018280)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:44.07,113.75,89.33,52.55,147.52,306. 78,132.40,66.53
Arabidopsis thaliana homolog: AT5G35530.1
Automatic updates:
Name: NM_001248397 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499737 (LOC100499737), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001248397 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 40S ribosomal protein S3 (LOC100499737), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:37906115..37906232 (+ strand)
Length: 118
Type: five_prime_UTR
Position: Chr08:37906233..37906262 (+ strand)
Length: 30
Type: CDS
Position: Chr08:37906382..37906529 (+ strand)
Length: 148
Type: CDS
Position: Chr08:37906617..37906788 (+ strand)
Length: 172
Type: CDS
Position: Chr08:37907304..37907358 (+ strand)
Length: 55
Type: CDS
Position: Chr08:37907444..37907575 (+ strand)
Length: 132
Type: CDS
Position: Chr08:37907685..37907855 (+ strand)
Length: 171
Type: CDS
Position: Chr08:37907856..37908275 (+ strand)
Length: 420
Type: three_prime_UTR

>Vigan.08G299300.01 class=Sequence position=Chr08:37906115..37908275 (+ strand)
TAGGGTTTCA AGTATCCCCT CTACCTATAT ATTCCACTCT CTACCCAGAA ATTAGGGTTT ATTGTCACAC CCCAGCCGTA
GCTGCCCATT GGTTTCTGCA TCACTTCGAT TCTTGACAAT GGCGACCCAA ATGAGCAAGA AGAGAAAGGT GAGTTTCTCA
TTTCTCAACT GTCACCAATT TCAATTGCCG ATAACATCAT CAGCAACTAA ACATTTGCCC ATAATAAAAT CAATAATCTA
TCACTAAAAC ATTTGCGTGC GTTGCAGTTC GTGGCTGATG GAGTGTTTTT CGCGGAACTA AATGAGGTTT TGACACGAGA
GCTGGCGGAG GATGGTTACT CTGGTGTGGA AGTGAGGGTT ACGCCGATGC GCACTGAAAT CATCATCAGA GCTACAAGAA
CCCAAGCCGT ACTCGGTGAG TGTGCCTCCG TATAGTTCTG GAACCTTCTA TTACTTTTTG TTGGAATTGA GTATTGAAGG
TTTTCTCTTT GTATATGTGT AGGTGAGAAG GGAAGGAGAA TCAGGGAACT TACCTCGGTG GTTCAGAAGA GATTCAAGTT
TCCAGAGAAC AGCGTTGAAC TCTACGCTGA GAAAGTCAAC AACAGGGGAC TTTGCGCCAT AGCTCAGGCT GAGTCTCTTC
GCTACAAGCT CCTCGGGGGA CTTGCTGTAC GCAGGTACAA ATAGTCACAA ATACAAATAG TCACATTTAC ATATACATTG
TGATCCTCTA TATCGTGATC CTCTATATTT CGTACAATTA TGACATTGGT GTGAAGTATT CACCATCGCC ACCGGGATTC
TGTCTTTCCA TTTATAGGTG GACCTCTCTT CCTTATGAAA CCTTTTTCCA GTAGTACAAA ATTATAGATT TATTGTGATC
CTTGATATTG AGAATTATTG TTGACGAAGA TTGTTCTGCT GTAATTCCGA TTGTGGTGAT TCCAGGATCC TTGATGTTCT
TGTTGTAATT GCAGTTGTGT ACTTCATAAC TTGATTGATA AATATCAATT TTATTTCGAC AAGCAAAATG TTACCCTTTA
GACCTACTTT GTTTCTGTAA GAAACATAAT TTTTGATTAG TTTGCAAATT TGTTTATTTT CTAATCTCGG AATGTTATTT
TTACTCCAGT GGGCACCTGC AATTTTTCAT TGGATTTGTG GTAATGTTAT TCGATTGTGT TTATTTCAGG GCTTGCTATG
GTGTTTTGAG GTTTGTCATG GAGAGTGGTG CCAAGGGATG TGAGGTTTGT TTTCCAAATG CTTTTATATG AGGTATTACT
ATTGTGGTTT GTTGCTTTGT CTGATGGTTT GCTTGTTTGA TTTGAGCAGG TGATTGTGAG TGGTAAATTG AGAGCCCAGA
GGGCAAAATC CATGAAGTTT AAGGATGGCT ACATGATTTC TTCTGGGCAA CCTGTCAAGG ATTACATTGA CTCTGCAGTG
AGACACGTCC TCCTCAGACA GGTTATTTAT TTCAATCTTT AATGGATTGT TTATAAAGTT TCTCTTTGGT TATTGATTCA
CTGTTTTACT TTTGTCATAA TACTATTTTT ATGCCTTGGT GTCTCCATAG GGTGTTCTTG GCATTAAGGT GAAGATTATG
CTTGATTGGG ATCCTAAAGG GAAGCAGGGT CCTGTAACTC CTCTCCCTGA TATTGTCACA ATTCATACTC CAAAAGAGGA
AGAGGAATAC ATCCGGCCTG CTCCAGTTCT GGCCAATGAT ATCGAGGTCC CTGTGGCTTG AAAATACATG GAGCAGTACT
TTATATTATT AGCAAATGCC TTGTTTTTCT TGTATTCAAT GTTTTTGGTC AAGGACATAT TCAAAATTTT GTAGTTTCTT
AAAGAATTGA AGTCATTTGT TTTATCTTTT TTATACCTTT ATGCTATGTA GTTTGGATCT TGTACTTGTG ATTCATGGCA
TCGATACATT GTGTTATTTT CCTAAACCTT AATTTTTTAA GTGCAGGTGA ATTTCAGAAA CTAAAAATAA AGTATTTTTG
TCGTTGGAAA GTACATGAAT GCCTTTTGTA AAATAACGAT GATCTTGTAG CCGAATTAAC TCAATTTTTT GTACTTTTTT
TTATGTTTAC CTCTAGAGGT CAGATTGACG ATTGAGCAAG TAACGTGTTG TAAGGTACAT TAAGATTGAT GTCTACCATA
G

>Vigan.08G299300.01
TAGGGTTTCA AGTATCCCCT CTACCTATAT ATTCCACTCT CTACCCAGAA ATTAGGGTTT ATTGTCACAC CCCAGCCGTA
GCTGCCCATT GGTTTCTGCA TCACTTCGAT TCTTGACAAT GGCGACCCAA ATGAGCAAGA AGAGAAAGTT CGTGGCTGAT
GGAGTGTTTT TCGCGGAACT AAATGAGGTT TTGACACGAG AGCTGGCGGA GGATGGTTAC TCTGGTGTGG AAGTGAGGGT
TACGCCGATG CGCACTGAAA TCATCATCAG AGCTACAAGA ACCCAAGCCG TACTCGGTGA GAAGGGAAGG AGAATCAGGG
AACTTACCTC GGTGGTTCAG AAGAGATTCA AGTTTCCAGA GAACAGCGTT GAACTCTACG CTGAGAAAGT CAACAACAGG
GGACTTTGCG CCATAGCTCA GGCTGAGTCT CTTCGCTACA AGCTCCTCGG GGGACTTGCT GTACGCAGGG CTTGCTATGG
TGTTTTGAGG TTTGTCATGG AGAGTGGTGC CAAGGGATGT GAGGTGATTG TGAGTGGTAA ATTGAGAGCC CAGAGGGCAA
AATCCATGAA GTTTAAGGAT GGCTACATGA TTTCTTCTGG GCAACCTGTC AAGGATTACA TTGACTCTGC AGTGAGACAC
GTCCTCCTCA GACAGGGTGT TCTTGGCATT AAGGTGAAGA TTATGCTTGA TTGGGATCCT AAAGGGAAGC AGGGTCCTGT
AACTCCTCTC CCTGATATTG TCACAATTCA TACTCCAAAA GAGGAAGAGG AATACATCCG GCCTGCTCCA GTTCTGGCCA
ATGATATCGA GGTCCCTGTG GCTTGAAAAT ACATGGAGCA GTACTTTATA TTATTAGCAA ATGCCTTGTT TTTCTTGTAT
TCAATGTTTT TGGTCAAGGA CATATTCAAA ATTTTGTAGT TTCTTAAAGA ATTGAAGTCA TTTGTTTTAT CTTTTTTATA
CCTTTATGCT ATGTAGTTTG GATCTTGTAC TTGTGATTCA TGGCATCGAT ACATTGTGTT ATTTTCCTAA ACCTTAATTT
TTTAAGTGCA GGTGAATTTC AGAAACTAAA AATAAAGTAT TTTTGTCGTT GGAAAGTACA TGAATGCCTT TTGTAAAATA
ACGATGATCT TGTAGCCGAA TTAACTCAAT TTTTTGTACT TTTTTTTATG TTTACCTCTA GAGGTCAGAT TGACGATTGA
GCAAGTAACG TGTTGTAAGG TACATTAAGA TTGATGTCTA CCATAG

>Vigan.08G299300.01
ATGGCGACCC AAATGAGCAA GAAGAGAAAG TTCGTGGCTG ATGGAGTGTT TTTCGCGGAA CTAAATGAGG TTTTGACACG
AGAGCTGGCG GAGGATGGTT ACTCTGGTGT GGAAGTGAGG GTTACGCCGA TGCGCACTGA AATCATCATC AGAGCTACAA
GAACCCAAGC CGTACTCGGT GAGAAGGGAA GGAGAATCAG GGAACTTACC TCGGTGGTTC AGAAGAGATT CAAGTTTCCA
GAGAACAGCG TTGAACTCTA CGCTGAGAAA GTCAACAACA GGGGACTTTG CGCCATAGCT CAGGCTGAGT CTCTTCGCTA
CAAGCTCCTC GGGGGACTTG CTGTACGCAG GGCTTGCTAT GGTGTTTTGA GGTTTGTCAT GGAGAGTGGT GCCAAGGGAT
GTGAGGTGAT TGTGAGTGGT AAATTGAGAG CCCAGAGGGC AAAATCCATG AAGTTTAAGG ATGGCTACAT GATTTCTTCT
GGGCAACCTG TCAAGGATTA CATTGACTCT GCAGTGAGAC ACGTCCTCCT CAGACAGGGT GTTCTTGGCA TTAAGGTGAA
GATTATGCTT GATTGGGATC CTAAAGGGAA GCAGGGTCCT GTAACTCCTC TCCCTGATAT TGTCACAATT CATACTCCAA
AAGAGGAAGA GGAATACATC CGGCCTGCTC CAGTTCTGGC CAATGATATC GAGGTCCCTG TGGCTTGA

>Vigan.08G299300.01
MATQMSKKRK FVADGVFFAE LNEVLTRELA EDGYSGVEVR VTPMRTEIII RATRTQAVLG EKGRRIRELT SVVQKRFKFP
ENSVELYAEK VNNRGLCAIA QAESLRYKLL GGLAVRRACY GVLRFVMESG AKGCEVIVSG KLRAQRAKSM KFKDGYMISS
GQPVKDYIDS AVRHVLLRQG VLGIKVKIML DWDPKGKQGP VTPLPDIVTI HTPKEEEEYI RPAPVLANDI EVPVA*