GBrowse Details

Vigan.08G263900.01

Basic Information:
Name: Vigan.08G263900.01
Multiple alignment
Variant Information
Position: Chr08:27521047..27526356 (+ strand)
Length: 5310
Functional Information:
Description: Similar to zinc finger CCCH domain-containing protein 21-like. [XP_004497453.1, Cicer arietinum]
GO: Molecular Function: metal ion binding (GO:0046872)
InterPro: Zinc finger, CCCH-type (IPR000571)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:115.21,69.62,53.44,48.10,61.09,35.65,32.76,49.49
Arabidopsis thaliana homolog: AT2G20280.1
Automatic updates:
Name: KM587704 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone GmC3H30 C3H zinc finger protein mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: NM_001317657 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max zinc finger CCCH domain-containing protein 11-like (LOC100778701), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:27521047..27521313 (+ strand)
Length: 267
Type: five_prime_UTR
Position: Chr08:27521314..27521484 (+ strand)
Length: 171
Type: CDS
Position: Chr08:27521589..27521673 (+ strand)
Length: 85
Type: CDS
Position: Chr08:27521764..27521904 (+ strand)
Length: 141
Type: CDS
Position: Chr08:27522012..27522100 (+ strand)
Length: 89
Type: CDS
Position: Chr08:27522299..27522487 (+ strand)
Length: 189
Type: CDS
Position: Chr08:27522566..27522696 (+ strand)
Length: 131
Type: CDS
Position: Chr08:27522837..27522939 (+ strand)
Length: 103
Type: CDS
Position: Chr08:27525733..27525906 (+ strand)
Length: 174
Type: CDS
Position: Chr08:27525907..27526356 (+ strand)
Length: 450
Type: three_prime_UTR

>Vigan.08G263900.01 class=Sequence position=Chr08:27521047..27526356 (+ strand)
TTTAAGATTA ACCTATCAAG TGTGCACTGG AGGGGTAGAT CGGGAATTGA ACCCCTTCAT AATGTTCTGG AACCTACACC
ACCCCTTGCC TCTCACCTTC GAACCCTAAC CCACCCAAAC AAAAAGCAAA CTTCTTTCCC CTCTCAACAT CCCCTCCTTT
GCACCACACA GATCCTTCCT TCGTTCATAC CTTTATTAAT TTTCATCGAA GCAATTAATA TTATCTAACA CATATATTTG
TTCTTAATTT TTTGATGCCG ATAAAATATG CCGCCGAAGC AGCAATCCAA AGCTGATTTA GCGAAGAAGC AGAAGATTGT
AGAGGACAAA ACCTTCGGTC TCAAGAACAA AAACAAGAGC AAAAATGTTC AGAAGTATGT CCAGAACCTT AAGCAATCAG
TGCAGCCCAG GGTCGATCCT GCCAAAGTCG ATGCCAAGGT ACATGATATA TATGTATCTC TGTTTTCTTT TTTGTTAATC
ATGGGTTATA ACTGATTTGT AATTTTTACT TAAGAAAAAA TTGTTTGTGA TGGTGATGAC AGAAAAAGAA GGAGGAAGAG
AAGGCCAAGG AGAAGGAGCT AAATGATTTG TTCAAAATCG CTGTTACTCA GCCTAAAGTG CCAGTTGGTA ATGAAATAAT
CATTTTATAA GTACTATTTT TTTTTATCAG TGTTGATGGA AAGTGGAAGC TAATATATCT GAGTTTGCTT TGGTCAGGCG
TTGATCCCAA GTCTATAGTG TGTGAGTTTT ATAAAGTCGG GCAATGCGCC AAAGGCTTCA AGTGCAAGTT TTCGCATGAT
TTGAATGTTC AGAGGAAAGG GGAAAAAATT GACATTTATA GTGATAAGCG TGACCAGGGT ATTGCATAGA GATAGTTCAA
TGATGATAAT TGTTTTTTGT TTTTTTTGGC TTTGAAGACT TTTTTTTTTG TTTTTCTAAC TTCGTGGTTT GGTTCATGTT
GTCAGAAACA ATGGAGGACT GGGATCAAGA GACCTTGGAG AAGGCGGTGG AGTCGAATAA ATCTTATTAT AATCAGAATA
AAGCGACTGA CATTGTATGT TTTGTTAGAT TTGTTGGACT TGGAATCTTA ACTATTAAAT CTATTTGTTT GGTATTCATT
TACTCTTTTT GTGGTTAATT GTGAGGCTTC TATTGGATGT TTGGTGGTAT TGCATTGTTT TCAAGTTGTT TTTGTAGTTT
GGCTTGTGCT ACTTGAAATG ACTGCTGTCT GTTATTTGGC TGATATGTTC AGGTATGCAA ATACTTTTTG GATGCTGTAG
AAAAGAAGCA ATACGGGTGG TTATGGGAAT GCCCCAATGG TGGTAAGAAT TGCCATTATA GACATGCTCT TCCACCTGGT
TATGTTTTGA AATCCCAAAT GAAGGCTTTG TTAGAGGAAG AAGCTGACAA ATTATCAATC GAGGAGGAGA TTGAAAATCA
GGTGAATTTT TTTCCTTCTT GTTAGAAGCT ATGTCATAAT ATTTTATTAG GTCATCTAAC AATATTTTAC ATGGTATAGC
GTGCCAAAGT GAAAACCACG ACTCCTATGA CTCCTGACTT ATTCTATGAA TGGAAGAAGA AGAAGATAGA AGAAAGAGAT
GCCAATTTAG CCGCACAGCA GGCAGAGAGG GCTAAGAATG ACCGTATGAG GTACATCCAT TATCCATTAC CTATATTCAC
ATGTGAATGT ATGTATATGG CCCCCACCTT CTTTTACTCA ATAAAAAATC GTATGTGCAT GTTGTTATGA AGGTGGACAC
TATTTTACAT TGTTTTCTCC TCCAATGCAG TGGTCGGGAG CTGTTTCTGT CAAATGCTAG CTTGTTTGTG GACGATGCAG
AAGCATATGA AAAATACCAG AGAGAACCAG AATATGATGA AACTGGACAG AATGTAAGTT TTCTTGTCTG TCTTCTCAAC
ATCTCCAAAT TTGGTTTAGT ATATTTCAAA TTCTGATAAC CAACCTGGTG ATTGCAAATC TGAGATAAAT GCTACTAGAG
GATTACCGTT CACATAAAAA GCTGCAGTGC GACCACAGTT ACTGGAATGT TGTGCCTTTT TGTTCAAAAT AAATCTGTCA
GTTGCAAGCA TTTTAAAAAA ATATGGCCAA TTTGGCTGAT ACTGAATTTC TGTAACTGTG ATGAGTAAAT TGCAGTATCT
GTAATGGAAC TATGAGTGCT ACTGTAATCT TTAATCATGA TATACCCTCT CATTTTATAA ATATAAATAA ATTTTAAGTA
AAGTGATTAA GTTTTTAGAT AAATAACTTG TGTATTGCTA AGCTTTGCTT TGAAATTCAC TGGGTCGTTG GATACATATT
AGGGTGTTGC TTGAGCTCTT GCTGCCCCTC TATCCTGTTT GATGTCAACT AGTATTTACC CTGATTAAGT TGAAATTTGA
ATTGTAGAGA AAACTTGGAG GAGAAAAATT GAAACTTGAT TCCCAAGTCA ACTTGTTTCA CTTTCTTTTC AACCAAGCAT
TCATTTTTTA AAATTTCAAT AATTTTTTTT CCTCCATGGA AACATAAACA AAGGTGAGGG TTTAGATAGG TTTTAGAAGA
AAATGCACTC ATATAGATGT TCTATAACCT TTTTGTGTAG TTTTTCTTTG CTTAACTAAT ATAATACTTT TAGCTTTTTG
ATTTCAAAAG AACACTAGAA AAACATTTTT GATGTTTTTT TTTTCTAAAA AAACGTGTGG TTAGGATGTT TTAAAGAATG
TTTTTGAATT AAAAACATTC TTTTCCATAA AAGAACATGA ATAGCCCTTA AGACCTCGAA GTTAAAGTAT TGAATGTTAA
CAATTAGGCT GTCCACTTGG GAAATTTGAC TATCTTTTAA TTAGTGTCAA GTCAGTCTTT AGTGCAACTT AGTGAATCAA
TTTGGACTCC AGACCCTGAT TTAAGGTGAT TGTCCTCTAT AATCTTAACT TTTAGGAATA TGCTTTCCCC ATTATGATAT
TTTGAGCTAA AAATTTGCAG TTCAGGATAG CAGTACCAAA TTGTTTTGAG TTGATTTTGT TTGATTCTTC ACTCCATTTT
AGAAAGAAGC TCTTGTGGTT AGTAGAGTAG TGGGAATGTG AATTGCCAAA TTATCTTGGA GGACTTGGAC TTTGTTTTGT
ATTGAGTGCA CAACTTGTGC TTGTTTTTAA AAGCCCATTC TTGTAATGGG ATATAATGCA CATATAATGA GTTCCAAAAA
ATACAAAGTT GTAACCAGCA GAAACAGGCA CTACTGCATT GTGTGCTCGT ATTTTCTATA CACTATTTTA TTTTAATGAG
TTAAAATTTA TTTATTTTTT TGTTTTTAAT TTTATAATTT TATACATTTT TAGAATAAAA TATACTTATT ATTACTAATG
GGAAAGAGGC ACTCCACTTA TAGTTTCTTG TGATGTTTGA AGTTATTTGT AGGATGTTGT GTTGGTGAGA TATGGCACTT
AATTTTAGCA TATGAATAGT TTATATAGAT TTTCTATATG AAATATGTAT ATGAAATGGG AATTCCCATT ATATATTGCT
ATCAATAACA ATACATAGAG CAATTCTCAT ATTTCATTCT TATTTTACCT TTTATTATTT TGAAAATTAG AAAAAGAAAA
AAATTAAAAT AAACTATCCA ATGCCAGAAG TAACTGCACA CATTTTAACA GTACAAATTC TACACCTTTT ATTATGACTA
ATTATTTAAA TTTAAAAAAG TAGTTATTAA AACAATAAAA TTGGAAAAAA TTGTTTATTT AAAGTTAAAA AATAGTTATT
AAAAGGGTAA AATTTGAAAA AGAGTGAATG ATCTGCTATA GATTATTTGA ATTTAAAAAT TTAGTTACTA AAATGGTAAA
ATTGAAAAAT AGTTTTTTAT TATTAGTAAT TATTTGAATA TTGAAAAAGT AGTTATTGAA AGAGTAAAAC TGAAAAAAAA
TACTGTACAC CAAAAGAGTG AATCCCCTTT ATTGATGGTA TTGATTACAT AAAATTAAAA TTAATATTAA GTATAAAATT
TTTACTCATT AAAATAAGAT AGTGTATAGG GACACCCAAG TGCAACCGTG CCTTTGATTA TTCTGGTTAC TGTAAAGTAG
TGTGCAGTTG TGTTTTGATG GATTTGACCG TTTATCTCCA CTATTTTTCC TTTACAACAA CATAGTTTCT TCTTTTCTTT
CAGTTTATTG AATTATTTGC ATTGGTGGTT ACCCTTCATG GTGGGTTTTG TGTTAGTGAG GGTATTAAGA TTGTTTACCG
GGAAAAGTTT TGTTTTCTTT ATGATCTAAG TACATTTCTG TGGTGATATT CCGTTATGTA CTGTTGGGAT AACAGAATGT
ATAACAGACT ATAGTTATTG GAACCATGGT GTTGTGATTT TAAATTAAGA CCCAATTAGA AAAATGATTT GTGTACAAGA
AAATAATTGT TATAGGTGAT ACTCTTATCA AGTATAAAAT CTTATTGTTT TCCTTTGGTC ATGGTGCTCT GCCTTGAATT
ATGAATTAGA GTTTTTAAGT TTTTCATTAT ACCAAGTAAT CATTAAACCA AGTCTCAGGA GGAAGTATTG GCCTCTAGCA
CCAGCTTTCT TACATTTCAT TCTCTATTCA ATGTGCAGTT CAGATGTGTC TTTTAGTATT AAACATGGTC TCCTTTTTTA
AATCAGCTGT ATCTTTCATT TTTCTAATTG TCGGATCCAA CTTCAGGGTA ATGGGAACGC TACCCAAGAT GGTCCTAGCA
CCTCAGCCGG TGCTGATGGT GAAGCTCTTG ATGACATAGA TGATGATGAC GATGAGTTGG ACTTGGATGA GTTAAATGAA
TTGGAAGCAA GTTTAGCCAA GACATCAATC CAAATAAAGG AAACGGGAGC TGAAGCTTAA TCCTGAGAAT CAAACAATCT
TCACGTCACA TTTTTGTGCC TCTGCTGAAA AATTGAGCAT TTACCTTTAC CCACTCGCTC TGTATGCTTT CACGGAAGGT
TTTTGAATGA AGGTTGTGCT GATAATGAAA TTACTATCTG CAGTATCGCA TTTGATATGA ATAATGGCAG TTTCATAAAA
TCCAGTTTTC TGTTTTATTA CATCTCGTAT TGGACCTCCG ACATTTTTTG TTGTTTGAGA CGAATAGACT TGTGTATGTA
GACTGTAACT GATTTGTACA TGAGTTTCCT GTGTCGAAAA GGGATCTTCA ATTGTTCTCG TGCATGTGAT TTTCTTGAAC
CCATCAAAGC ATAAAATGCT ACTTTTTTTA TGGATGTTAT TGCTAGATAC TTTAGGTTAG TTATGCTTGA GTTTTTGAAC
GGGAGTTTAG TTTTCTTACC TTGTTTTTGG 

>Vigan.08G263900.01
TTTAAGATTA ACCTATCAAG TGTGCACTGG AGGGGTAGAT CGGGAATTGA ACCCCTTCAT AATGTTCTGG AACCTACACC
ACCCCTTGCC TCTCACCTTC GAACCCTAAC CCACCCAAAC AAAAAGCAAA CTTCTTTCCC CTCTCAACAT CCCCTCCTTT
GCACCACACA GATCCTTCCT TCGTTCATAC CTTTATTAAT TTTCATCGAA GCAATTAATA TTATCTAACA CATATATTTG
TTCTTAATTT TTTGATGCCG ATAAAATATG CCGCCGAAGC AGCAATCCAA AGCTGATTTA GCGAAGAAGC AGAAGATTGT
AGAGGACAAA ACCTTCGGTC TCAAGAACAA AAACAAGAGC AAAAATGTTC AGAAGTATGT CCAGAACCTT AAGCAATCAG
TGCAGCCCAG GGTCGATCCT GCCAAAGTCG ATGCCAAGAA AAAGAAGGAG GAAGAGAAGG CCAAGGAGAA GGAGCTAAAT
GATTTGTTCA AAATCGCTGT TACTCAGCCT AAAGTGCCAG TTGGCGTTGA TCCCAAGTCT ATAGTGTGTG AGTTTTATAA
AGTCGGGCAA TGCGCCAAAG GCTTCAAGTG CAAGTTTTCG CATGATTTGA ATGTTCAGAG GAAAGGGGAA AAAATTGACA
TTTATAGTGA TAAGCGTGAC CAGGAAACAA TGGAGGACTG GGATCAAGAG ACCTTGGAGA AGGCGGTGGA GTCGAATAAA
TCTTATTATA ATCAGAATAA AGCGACTGAC ATTGTATGCA AATACTTTTT GGATGCTGTA GAAAAGAAGC AATACGGGTG
GTTATGGGAA TGCCCCAATG GTGGTAAGAA TTGCCATTAT AGACATGCTC TTCCACCTGG TTATGTTTTG AAATCCCAAA
TGAAGGCTTT GTTAGAGGAA GAAGCTGACA AATTATCAAT CGAGGAGGAG ATTGAAAATC AGCGTGCCAA AGTGAAAACC
ACGACTCCTA TGACTCCTGA CTTATTCTAT GAATGGAAGA AGAAGAAGAT AGAAGAAAGA GATGCCAATT TAGCCGCACA
GCAGGCAGAG AGGGCTAAGA ATGACCGTAT GAGTGGTCGG GAGCTGTTTC TGTCAAATGC TAGCTTGTTT GTGGACGATG
CAGAAGCATA TGAAAAATAC CAGAGAGAAC CAGAATATGA TGAAACTGGA CAGAATGGTA ATGGGAACGC TACCCAAGAT
GGTCCTAGCA CCTCAGCCGG TGCTGATGGT GAAGCTCTTG ATGACATAGA TGATGATGAC GATGAGTTGG ACTTGGATGA
GTTAAATGAA TTGGAAGCAA GTTTAGCCAA GACATCAATC CAAATAAAGG AAACGGGAGC TGAAGCTTAA TCCTGAGAAT
CAAACAATCT TCACGTCACA TTTTTGTGCC TCTGCTGAAA AATTGAGCAT TTACCTTTAC CCACTCGCTC TGTATGCTTT
CACGGAAGGT TTTTGAATGA AGGTTGTGCT GATAATGAAA TTACTATCTG CAGTATCGCA TTTGATATGA ATAATGGCAG
TTTCATAAAA TCCAGTTTTC TGTTTTATTA CATCTCGTAT TGGACCTCCG ACATTTTTTG TTGTTTGAGA CGAATAGACT
TGTGTATGTA GACTGTAACT GATTTGTACA TGAGTTTCCT GTGTCGAAAA GGGATCTTCA ATTGTTCTCG TGCATGTGAT
TTTCTTGAAC CCATCAAAGC ATAAAATGCT ACTTTTTTTA TGGATGTTAT TGCTAGATAC TTTAGGTTAG TTATGCTTGA
GTTTTTGAAC GGGAGTTTAG TTTTCTTACC TTGTTTTTGG 

>Vigan.08G263900.01
ATGCCGCCGA AGCAGCAATC CAAAGCTGAT TTAGCGAAGA AGCAGAAGAT TGTAGAGGAC AAAACCTTCG GTCTCAAGAA
CAAAAACAAG AGCAAAAATG TTCAGAAGTA TGTCCAGAAC CTTAAGCAAT CAGTGCAGCC CAGGGTCGAT CCTGCCAAAG
TCGATGCCAA GAAAAAGAAG GAGGAAGAGA AGGCCAAGGA GAAGGAGCTA AATGATTTGT TCAAAATCGC TGTTACTCAG
CCTAAAGTGC CAGTTGGCGT TGATCCCAAG TCTATAGTGT GTGAGTTTTA TAAAGTCGGG CAATGCGCCA AAGGCTTCAA
GTGCAAGTTT TCGCATGATT TGAATGTTCA GAGGAAAGGG GAAAAAATTG ACATTTATAG TGATAAGCGT GACCAGGAAA
CAATGGAGGA CTGGGATCAA GAGACCTTGG AGAAGGCGGT GGAGTCGAAT AAATCTTATT ATAATCAGAA TAAAGCGACT
GACATTGTAT GCAAATACTT TTTGGATGCT GTAGAAAAGA AGCAATACGG GTGGTTATGG GAATGCCCCA ATGGTGGTAA
GAATTGCCAT TATAGACATG CTCTTCCACC TGGTTATGTT TTGAAATCCC AAATGAAGGC TTTGTTAGAG GAAGAAGCTG
ACAAATTATC AATCGAGGAG GAGATTGAAA ATCAGCGTGC CAAAGTGAAA ACCACGACTC CTATGACTCC TGACTTATTC
TATGAATGGA AGAAGAAGAA GATAGAAGAA AGAGATGCCA ATTTAGCCGC ACAGCAGGCA GAGAGGGCTA AGAATGACCG
TATGAGTGGT CGGGAGCTGT TTCTGTCAAA TGCTAGCTTG TTTGTGGACG ATGCAGAAGC ATATGAAAAA TACCAGAGAG
AACCAGAATA TGATGAAACT GGACAGAATG GTAATGGGAA CGCTACCCAA GATGGTCCTA GCACCTCAGC CGGTGCTGAT
GGTGAAGCTC TTGATGACAT AGATGATGAT GACGATGAGT TGGACTTGGA TGAGTTAAAT GAATTGGAAG CAAGTTTAGC
CAAGACATCA ATCCAAATAA AGGAAACGGG AGCTGAAGCT TAA

>Vigan.08G263900.01
MPPKQQSKAD LAKKQKIVED KTFGLKNKNK SKNVQKYVQN LKQSVQPRVD PAKVDAKKKK EEEKAKEKEL NDLFKIAVTQ
PKVPVGVDPK SIVCEFYKVG QCAKGFKCKF SHDLNVQRKG EKIDIYSDKR DQETMEDWDQ ETLEKAVESN KSYYNQNKAT
DIVCKYFLDA VEKKQYGWLW ECPNGGKNCH YRHALPPGYV LKSQMKALLE EEADKLSIEE EIENQRAKVK TTTPMTPDLF
YEWKKKKIEE RDANLAAQQA ERAKNDRMSG RELFLSNASL FVDDAEAYEK YQREPEYDET GQNGNGNATQ DGPSTSAGAD
GEALDDIDDD DDELDLDELN ELEASLAKTS IQIKETGAEA *