GBrowse Details

Vigan.08G261900.01

Basic Information:
Name: Vigan.08G261900.01
Multiple alignment
Variant Information
Position: Chr08:26959939..26960673 (+ strand)
Length: 735
Functional Information:
Description: Similar to Casparian strip membrane protein 2. [P0DI40, Vigna unguiculata]
InterPro: Uncharacterised protein family UPF0497, trans-membrane plant subgroup (IPR006459)
Uncharacterised protein family UPF0497, trans-membrane plant (IPR006702)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.00,0.00,0.07,0.00,0.15,0 .00
Arabidopsis thaliana homolog: AT2G36100.1
Structure :
Position: Chr08:26959939..26960177 (+ strand)
Length: 239
Type: CDS
Position: Chr08:26960252..26960375 (+ strand)
Length: 124
Type: CDS
Position: Chr08:26960452..26960673 (+ strand)
Length: 222
Type: CDS

>Vigan.08G261900.01 class=Sequence position=Chr08:26959939..26960673 (+ strand)
ATGTCAACGA CCGTGGATGT CCCAGAATCC AGCAATGTTG GTAAAGGAAA AGCAGTTGCA GTTGGAAGGC CAGGAGGGTG
GAAGAAAGGG TTAGCCATAA TGGACTTCAT TCTAAGGTTG GGTGGCATAG CATCTTCTCT TGGTGCTGCA GCAACTATGG
GAACAAGTGA TCAAACGCTC CCTTTCTTCA CTCAGTTCTT TCAGTTTGAA GCTAGTTACG ATAGCTTCAC TACTTTTCAG
TATGTAATCC AGCTTTTTCT CCATATTTAT GCCTTTTCTT AACAATCCAG TACTAATGGT TACCAAAATA CAGGTTTTTT
GTGATTACAA TGTCACTGGT GGCTGGGTAT CTTGTCCTGT CACTACCCTT CTCAGTCGTA GCCATCATAC GCCCTCATGC
AGCTGGACCA AGGCTTTTCC TCATCATCCT AGACACAGTA ATTAACTATG AACCAACCTT AATTATAATT ACAAACTACT
ATTCACATTT AATTGTTTGG TTGTAAAATG CAGGTGTTTC TGACTTTGGC CACAGCTAGT GGTGCTTCGG CAGCTGCAAT
CGTTTACTTG GCACACAACG GCAATCAAGA CTCCAACTGG CTTGCCATCT GTAACCAGTT TGGAGACTTT TGTGCCCAAA
CCAGTGGAGC TGTGGTTGCG TCCTTCGTCG CTGTGGTTAT CCTTGTGCTT CTCGTTATTA TGTCTGCTTT GCTCCTCAAA
AGACACCAAA GTTAA

>Vigan.08G261900.01
ATGTCAACGA CCGTGGATGT CCCAGAATCC AGCAATGTTG GTAAAGGAAA AGCAGTTGCA GTTGGAAGGC CAGGAGGGTG
GAAGAAAGGG TTAGCCATAA TGGACTTCAT TCTAAGGTTG GGTGGCATAG CATCTTCTCT TGGTGCTGCA GCAACTATGG
GAACAAGTGA TCAAACGCTC CCTTTCTTCA CTCAGTTCTT TCAGTTTGAA GCTAGTTACG ATAGCTTCAC TACTTTTCAG
TTTTTTGTGA TTACAATGTC ACTGGTGGCT GGGTATCTTG TCCTGTCACT ACCCTTCTCA GTCGTAGCCA TCATACGCCC
TCATGCAGCT GGACCAAGGC TTTTCCTCAT CATCCTAGAC ACAGTGTTTC TGACTTTGGC CACAGCTAGT GGTGCTTCGG
CAGCTGCAAT CGTTTACTTG GCACACAACG GCAATCAAGA CTCCAACTGG CTTGCCATCT GTAACCAGTT TGGAGACTTT
TGTGCCCAAA CCAGTGGAGC TGTGGTTGCG TCCTTCGTCG CTGTGGTTAT CCTTGTGCTT CTCGTTATTA TGTCTGCTTT
GCTCCTCAAA AGACACCAAA GTTAA

>Vigan.08G261900.01
ATGTCAACGA CCGTGGATGT CCCAGAATCC AGCAATGTTG GTAAAGGAAA AGCAGTTGCA GTTGGAAGGC CAGGAGGGTG
GAAGAAAGGG TTAGCCATAA TGGACTTCAT TCTAAGGTTG GGTGGCATAG CATCTTCTCT TGGTGCTGCA GCAACTATGG
GAACAAGTGA TCAAACGCTC CCTTTCTTCA CTCAGTTCTT TCAGTTTGAA GCTAGTTACG ATAGCTTCAC TACTTTTCAG
TTTTTTGTGA TTACAATGTC ACTGGTGGCT GGGTATCTTG TCCTGTCACT ACCCTTCTCA GTCGTAGCCA TCATACGCCC
TCATGCAGCT GGACCAAGGC TTTTCCTCAT CATCCTAGAC ACAGTGTTTC TGACTTTGGC CACAGCTAGT GGTGCTTCGG
CAGCTGCAAT CGTTTACTTG GCACACAACG GCAATCAAGA CTCCAACTGG CTTGCCATCT GTAACCAGTT TGGAGACTTT
TGTGCCCAAA CCAGTGGAGC TGTGGTTGCG TCCTTCGTCG CTGTGGTTAT CCTTGTGCTT CTCGTTATTA TGTCTGCTTT
GCTCCTCAAA AGACACCAAA GTTAA

>Vigan.08G261900.01
MSTTVDVPES SNVGKGKAVA VGRPGGWKKG LAIMDFILRL GGIASSLGAA ATMGTSDQTL PFFTQFFQFE ASYDSFTTFQ
FFVITMSLVA GYLVLSLPFS VVAIIRPHAA GPRLFLIILD TVFLTLATAS GASAAAIVYL AHNGNQDSNW LAICNQFGDF
CAQTSGAVVA SFVAVVILVL LVIMSALLLK RHQS*