GBrowse Details

Vigan.08G253900.01

Basic Information:
Name: Vigan.08G253900.01
Multiple alignment
Variant Information
Position: Chr08:25363298..25364930 (+ strand)
Length: 1633
Functional Information:
Description: Similar to Ethylene responsive transcription factor 2b. [G7IEJ4, Medicago truncatula]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
InterPro: AP2/ERF domain (IPR001471)
DNA-binding domain (IPR016177)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:108.74,52.22,5.60,7.12,275.77,11.15,59.11,3.05
Automatic updates:
Name: NM_001254494 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ERF protein (EBP), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254517 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ethylene-responsive transcription factor RAP2-2-like (LOC100780763), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:25363298..25363558 (+ strand)
Length: 261
Type: five_prime_UTR
Position: Chr08:25363559..25363727 (+ strand)
Length: 169
Type: CDS
Position: Chr08:25363812..25364542 (+ strand)
Length: 731
Type: CDS
Position: Chr08:25364543..25364930 (+ strand)
Length: 388
Type: three_prime_UTR

>Vigan.08G253900.01 class=Sequence position=Chr08:25363298..25364930 (+ strand)
TTAAAAGTAG ATAGAAAGAA TAAAGCCATT TGTGGATGGC TTCGCGAAGG GTAGCATTGT AGCGGAAGGT TCCTGATGTG
TCTGTCAAGC ACTTTCTCCC CTGTTTTTCC AACTACATAA GCCATTCCAA CCCTTCATTT TTTCTCACGT CATTTCTCTC
GACACCTTTT CCCTAATATT TCTCACAACC CACTTCAACT CTACTTCTAA AACCCATTCC CAAAACCTTT CTTTCACCAC
TCACCATAAC TTCCTTTCAT CATGTGTGGC GGTGCCATCA TCGCTGACTT CATACCCCGC CGTGACCGTT CTCTCGCCGC
CTCCGACCTC TGGCCAAACT CCTTCGGAAA GGACGATGAT TTCGGCTTCG GTTACTCCCA AATCGCTAAC CAACAACCCT
CCACTGTCAA AACGGCCCAA GCTCCCAAAG GTTGGTGTTC TTCCATCTTC AATAACTCTT TTTTTTTTTT TTATCATGTT
AAGGTTTTTT TCTAATGTGA TTTTCCACCA ACAGTTAGCG AGAAAGTTGA CACTAAGCCA GTGAAAAGGC AGAGGAAGAA
TCTCTACAGA GGGATTCGGC AGCGCCCTTG GGGCAAATGG GCTGCGGAGA TTCGCGATCC TAGAAAAGGG GTTCGTGTCT
GGCTGGGTAC CTTCAACACT GCGGAAGAAG CTGCAAGGGC CTATGATCGT GAAGCTCGAA AAATCCGCGG GAAAAAAGCT
AAGGTGAATT TCCCTAACGA GGACGATGAA TATTCCATTC AAGCTCGTAA TCCGATTCCA CCCCTTCCTT TCGCAACCCA
AAAACCAACC CCGTATCAGC AACAGTACCG TTGTGATCTC AATAATGCCC CTACAAATCT CAACTTGGAG TTTGGTTACG
ACCTGAACCA CACTGGAGCA TTTTCATCCC ACGTGGACAC TGTCAACGCT GACTCGGTTG TCGCTTCCGG CGACGAAAAT
TCAGGGTTAG CGTCCGGTTC AGAGGGCGCT CATTCGACAA ACGAGTTCAT GGGGTCTGGT GAGAAAGGGA ACGGTTATTT
CAACGGCACG GCGATTGAGA AGGAGAAAGA GATAGAGGTG ATTGAAGCTG AAGAGGAAAA GAACAAACTG CAGGAGCTTT
CTGAGGAACT GATGGCTTAT GAGAATTACA TGAAGTTTTA TCAGATTCCG TACTATGATG GACAATCTAT GCCACCGAAT
AATGTTCAGG AAAGTGTTGT CGGGGATCTC TGGAGTTTCG ATTGACGAGG AGTCAAGGGT GTTTATTTCT TCGTCAATAC
AGTCAAAGAT TTCTTCCCGT TCTGCTGACT AAACTAACAT CTCTGCGTTT TGGCAGGGAT GGACAGAAAT GTAAATTCGG
TGCTTCGGTG GTAGTCGTCT TCATGAGTTT CCAACTTCTT TTCGCCATCT TATTATTAAT TTATTGTTTC TAGAATTTAT
TTGTCTTCTA CTTTTGTTGA ATTGTAATTT TTCTTTTGGT GGTATGTTCA AATGTGATTT CACCGGATAA ATTTCAAAGT
CTTTGAATTT CGATCATCGG CTATTTTTTA TCTGTTTGGT TACTTTGGTG GTTCTGTTGT ATGCGTTTTC TCATCAATAC
TATTATTGCA AGAAAGACGA AGAAGAGTTA AAA

>Vigan.08G253900.01
TTAAAAGTAG ATAGAAAGAA TAAAGCCATT TGTGGATGGC TTCGCGAAGG GTAGCATTGT AGCGGAAGGT TCCTGATGTG
TCTGTCAAGC ACTTTCTCCC CTGTTTTTCC AACTACATAA GCCATTCCAA CCCTTCATTT TTTCTCACGT CATTTCTCTC
GACACCTTTT CCCTAATATT TCTCACAACC CACTTCAACT CTACTTCTAA AACCCATTCC CAAAACCTTT CTTTCACCAC
TCACCATAAC TTCCTTTCAT CATGTGTGGC GGTGCCATCA TCGCTGACTT CATACCCCGC CGTGACCGTT CTCTCGCCGC
CTCCGACCTC TGGCCAAACT CCTTCGGAAA GGACGATGAT TTCGGCTTCG GTTACTCCCA AATCGCTAAC CAACAACCCT
CCACTGTCAA AACGGCCCAA GCTCCCAAAG TTAGCGAGAA AGTTGACACT AAGCCAGTGA AAAGGCAGAG GAAGAATCTC
TACAGAGGGA TTCGGCAGCG CCCTTGGGGC AAATGGGCTG CGGAGATTCG CGATCCTAGA AAAGGGGTTC GTGTCTGGCT
GGGTACCTTC AACACTGCGG AAGAAGCTGC AAGGGCCTAT GATCGTGAAG CTCGAAAAAT CCGCGGGAAA AAAGCTAAGG
TGAATTTCCC TAACGAGGAC GATGAATATT CCATTCAAGC TCGTAATCCG ATTCCACCCC TTCCTTTCGC AACCCAAAAA
CCAACCCCGT ATCAGCAACA GTACCGTTGT GATCTCAATA ATGCCCCTAC AAATCTCAAC TTGGAGTTTG GTTACGACCT
GAACCACACT GGAGCATTTT CATCCCACGT GGACACTGTC AACGCTGACT CGGTTGTCGC TTCCGGCGAC GAAAATTCAG
GGTTAGCGTC CGGTTCAGAG GGCGCTCATT CGACAAACGA GTTCATGGGG TCTGGTGAGA AAGGGAACGG TTATTTCAAC
GGCACGGCGA TTGAGAAGGA GAAAGAGATA GAGGTGATTG AAGCTGAAGA GGAAAAGAAC AAACTGCAGG AGCTTTCTGA
GGAACTGATG GCTTATGAGA ATTACATGAA GTTTTATCAG ATTCCGTACT ATGATGGACA ATCTATGCCA CCGAATAATG
TTCAGGAAAG TGTTGTCGGG GATCTCTGGA GTTTCGATTG ACGAGGAGTC AAGGGTGTTT ATTTCTTCGT CAATACAGTC
AAAGATTTCT TCCCGTTCTG CTGACTAAAC TAACATCTCT GCGTTTTGGC AGGGATGGAC AGAAATGTAA ATTCGGTGCT
TCGGTGGTAG TCGTCTTCAT GAGTTTCCAA CTTCTTTTCG CCATCTTATT ATTAATTTAT TGTTTCTAGA ATTTATTTGT
CTTCTACTTT TGTTGAATTG TAATTTTTCT TTTGGTGGTA TGTTCAAATG TGATTTCACC GGATAAATTT CAAAGTCTTT
GAATTTCGAT CATCGGCTAT TTTTTATCTG TTTGGTTACT TTGGTGGTTC TGTTGTATGC GTTTTCTCAT CAATACTATT
ATTGCAAGAA AGACGAAGAA GAGTTAAAA

>Vigan.08G253900.01
ATGTGTGGCG GTGCCATCAT CGCTGACTTC ATACCCCGCC GTGACCGTTC TCTCGCCGCC TCCGACCTCT GGCCAAACTC
CTTCGGAAAG GACGATGATT TCGGCTTCGG TTACTCCCAA ATCGCTAACC AACAACCCTC CACTGTCAAA ACGGCCCAAG
CTCCCAAAGT TAGCGAGAAA GTTGACACTA AGCCAGTGAA AAGGCAGAGG AAGAATCTCT ACAGAGGGAT TCGGCAGCGC
CCTTGGGGCA AATGGGCTGC GGAGATTCGC GATCCTAGAA AAGGGGTTCG TGTCTGGCTG GGTACCTTCA ACACTGCGGA
AGAAGCTGCA AGGGCCTATG ATCGTGAAGC TCGAAAAATC CGCGGGAAAA AAGCTAAGGT GAATTTCCCT AACGAGGACG
ATGAATATTC CATTCAAGCT CGTAATCCGA TTCCACCCCT TCCTTTCGCA ACCCAAAAAC CAACCCCGTA TCAGCAACAG
TACCGTTGTG ATCTCAATAA TGCCCCTACA AATCTCAACT TGGAGTTTGG TTACGACCTG AACCACACTG GAGCATTTTC
ATCCCACGTG GACACTGTCA ACGCTGACTC GGTTGTCGCT TCCGGCGACG AAAATTCAGG GTTAGCGTCC GGTTCAGAGG
GCGCTCATTC GACAAACGAG TTCATGGGGT CTGGTGAGAA AGGGAACGGT TATTTCAACG GCACGGCGAT TGAGAAGGAG
AAAGAGATAG AGGTGATTGA AGCTGAAGAG GAAAAGAACA AACTGCAGGA GCTTTCTGAG GAACTGATGG CTTATGAGAA
TTACATGAAG TTTTATCAGA TTCCGTACTA TGATGGACAA TCTATGCCAC CGAATAATGT TCAGGAAAGT GTTGTCGGGG
ATCTCTGGAG TTTCGATTGA 

>Vigan.08G253900.01
MCGGAIIADF IPRRDRSLAA SDLWPNSFGK DDDFGFGYSQ IANQQPSTVK TAQAPKVSEK VDTKPVKRQR KNLYRGIRQR
PWGKWAAEIR DPRKGVRVWL GTFNTAEEAA RAYDREARKI RGKKAKVNFP NEDDEYSIQA RNPIPPLPFA TQKPTPYQQQ
YRCDLNNAPT NLNLEFGYDL NHTGAFSSHV DTVNADSVVA SGDENSGLAS GSEGAHSTNE FMGSGEKGNG YFNGTAIEKE
KEIEVIEAEE EKNKLQELSE ELMAYENYMK FYQIPYYDGQ SMPPNNVQES VVGDLWSFD*