GBrowse Details

Vigan.08G243300.01

Basic Information:
Name: Vigan.08G243300.01
Multiple alignment
Variant Information
Position: Chr08:23431352..23435112 (+ strand)
Length: 3761
Functional Information:
Description: Similar to Uncharacterized protein. [I1JFG2, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: F-box domain (IPR001810)
Leucine-rich repeat, cysteine-containing subtype (IPR006553)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:116.38,97.03,15.57,30.21,11.73,24.33 ,12.34,22.90
Arabidopsis thaliana homolog: AT1G12820.1, AT3G26810.1, AT3G62980.1, AT4G03190.1, AT4G24390.2, AT5G49980.1
Structure :
Position: Chr08:23431352..23431567 (+ strand)
Length: 216
Type: five_prime_UTR
Position: Chr08:23431568..23432034 (+ strand)
Length: 467
Type: CDS
Position: Chr08:23432466..23432958 (+ strand)
Length: 493
Type: CDS
Position: Chr08:23433080..23433877 (+ strand)
Length: 798
Type: CDS
Position: Chr08:23433878..23435112 (+ strand)
Length: 1235
Type: three_prime_UTR

>Vigan.08G243300.01 class=Sequence position=Chr08:23431352..23435112 (+ strand)
AACTCCTTAT CCTCCTCACC CTCATTTTCT ATTTCTCTCT CCCTTTTCTC TCTCTGTCTC TGCCAACTAC AAACAACTAC
ACAGCACGAC CTCGCTATTC CAATGGGGTC TCAGATCTAG ACGCTGCTCT GTTTCTGGTA TTCCTGTTCA TATTGTTGCT
ATTGTTGTTC ATCTCGCTTC CAGAACCACA GCGTTTTGGG TCATATTCCA TTCGACATGC GGCCCAAACT AGCCTACTCC
TTCCCTGAGG AGGTGCTGGA GCACGTGTTC TCCTTTATCG AGTGCGATAA GGACCGTGGC TCGATCTCCC TCGTCTGCAA
GTCCTGGTAT GAGATCGAGC GTTGGTGCCG CCGGAGAGTC TTCGTCGGAA ACTGCTACGC TGTCTCTCCG GCCACCGTTG
TCAACCGCTT CCCCAAAGTG AGATCCATCA CCATCAAGGG CAAGCCGCAC TTCGCGGACT TCAATTTGGT CCCCGAGGGT
TGGGGCGCTT ACGTCGGCCC TTGGATCAAG GCCATGGCGG CTGCCTACCC CTGGCTCCAG GAGATCAGGC TTAAGAGGAT
GGTCGTCACC GACGAATGCT TGGAACTTAT CGCCAAATCG TTCAAGAACT TCGGAGTGCT GGTGCTCACT TCTTGCGAGG
GTTTCACCAC TGATGGGCTT GCTGCCATTG CCGCCCATTG CAGGTTTCAC AGCTTATTCT TTTGTTTTTC CCTTTCAGTT
TGCAAACTCA ATTTCGAAGT GAAATGTTGA TGATATTGGT TTAATTACTT TTTCTTTTAG GTATTAAAAA GTTTAAGTAA
GGATCCGAAT GGAAAATGTT TGAAAATTAT AAGAACTGTT CATAAAGGAG GAATTTGTTT TCAAGTCATT TTTTTTAATG
TTTTGTAGGA GTTTATATTA TTACATGGTG GGAAGTTTTT GGGGAATCTG ATAGAGTTGT TTGCTACTCT TTTTTTTCTG
TTTTTAATGT GTCAGTATTC TTAATGACAA TGACTGTTGT ATTTGTAATT TGGTTCAGTG TGATTCTGTT GACCGCATTC
TGTATTTTGT CTAAATGGAT TTTTTTTTTC TGAACATGGT TCTGATAAAT CCATTGCGTG GTAATAAATT GTAGGAATTT
GAGGGAGTTG GAGTTGCGGG AGAGTGAAGT GGAAGACATT TGTGGACACT GGCTTAGCCA TTTTCCCGAT TCGTACACAT
CCTTGGTTTC CCTTAATATT TCTTGCTTAG GCAATGAGGT GAATTTGTCT GCCCTAGAGC GTCTGGTTAG TAGGTGTCCC
AATCTGCAGA CTCTCCGCCT CAACCGTGCT GTGCCCCTAG ATAAGCTGGC CAACCTTCTT CGCGGAGCTC CTCAGTTAGT
TGAGTTAGGC ACAGGAGCCT ACACGAGTGA GATGCGGCCG GAGGTCTTTT CAAACCTGGC TGAAGCATTT GCTGGGTGCA
GGCAATTAAA AAGCTTGTCA GGATTTTGGG ACGTGCTACC CTCCTACCTT CCAGCTGTTT ATCCTATCTG CTCCAACCTG
ACATCACTAA ACATGAGTTA TGCAACTATT CAAAGCCCTG ATCTTATCAA GCTTGTTAGT CAGTGTGAAA ATTTACAACG
GTTATGGGTA AGTCTGATCT ATACGGTGTT TCCGTTCTTA TTGCATGTTT GTGTTTGTAT CTTTGTTACT GTTGCAAAGC
AGTGCTGTAA ATTCCCATGC TGATGATCGG AAGGTATTTG TTGAATAGGT GTTGGATTAC ATTGAAGATG CTGGCCTTGA
AGTGATTGCT GCATCGTGTA AGGATCTGAG GGAGTTGAGG GTGTTTCCGT CTGATCCATT TGGGTTAGAA CCAAATGTGG
CATTGACTGA GCAGGGCCTT GTTTCTGTGT CTGAAGGCTG CTCCAAGCTC CAGTCCGTTC TATATTTTTG TCGTCAAATG
TCTAATGTGG CCTTGCTTAC AATTGCCAGG AACAGGCCTA ATATGACTCG TTTTAGACTG TGTATTATTG AGCCGCAAGT
TCCAGACTAT CTTACCCAAG ATCCTCTGGA TGCTGGTTTT GGAGCTATTG TAGAGCATTG CAAGGATCTT CGTCGCCTTT
CCCTTTCCGG GCTTCTCACT GACCGCGTTT TTGAGTATAT TGGGACTTAC GGTAAGAAGC TTGAGATGCT TTCTGTGGCT
TTTGCCGGAG ATAGCGATTT GGGACTCCAT CATGTGCTGT CTGGGTGTGA CAACCTTAGG AAGCTGGAGA TCAGGGACTG
CCCCTTTGGT GACAAAGCCC TTTTAGCCAA TGCTGCAAAG CTGGAGACAA TGCGATCCCT TTGGATGTCC TCTTGCTTGG
TGAGTTATGG AGCATGTAAA CTTCTGGGTC AGAAAATGCC GATGCTTAAT GTTGAAGTGA TTGATGAAAG AGGACCTCCA
GATTCAAGGC CGGATAGTAG TCCTGTTGAG AAGCTATACA TATACAGGAC TGTTTCTGGG CCAAGATTGG ACATGCCAGG
CTATGTATGG AGAATGGAAG GCGATTCTGC ATTAAGAATT TCTTGAGTGA TTTTGCTGTG GAACGAGCAT GGAATTTATT
ATGACAGTTT GATGTGAGAG TTGTTGATGC AGGTACATGC CTAGAACTGT TGCTGTTATG GTTGGTGTTT GAGCTAGGTA
CAGGAGGAGG TATATAATAT GGAAAGGCTG GAGCTCGATA GCCATTCGTT TTACTCTTTG GCTGAGCAAC GAGACACCAA
TGCTGATAAA GAGATCGGAA CCTTGTTGTT AGATGTGGCA TAGGATAGTT TTTATTATTT ATGGACCTGT GCATACTTTT
ATATGCATGT TACCCCGCTC TTCTAAAATA TCGGTGGACT TTGTTATTAT CATTAAAAAT TATGCGGTGG GAAGGAATAA
AAAAACTTGG AACTATATTC TAATGCAAAC CTTATTTGTT GTTTGCAACA ATGTTGAAGC ATCTGATTTA ATTATGCCAT
GTTTTCTTTT GTTCTATTCA GAATCGATTG GTGCTGTGAC AACAGAGTCT ACGCATGTGA ATGGAGAGAG AAATGGCTCA
ACCAGTGGAA AGGTTTCTGC ATTTTAAATG TGCGGTTCCA GACTTTCGAT CGATTTTTAC TTAAATATAT GCATTCAATT
TCATTTTGGT TGCCAACGCC AGGCTTTGTG ATAACTTTTT TCGTTCAAGA GAATCGTTAA AGCTGAAGAT AGTAGTATTA
CACGCAAATT AACCCCAGTA AAATTCACCT GTATGCTTGT TCTACTGAGG AACCGGTGAT GGTATCGTCG TTAAGATGAA
GTTCTCTCAG TTTTCGAGGT TTGTTAGCTT TTGATTTTAT AAAATAATAA AAGCATAATT TTAAAAGTAT AGTAAAATAG
TTAACTTTTT AGAATGAAAT CTTTCTCTGA ATTATTTTTC ATATATGCTA TGTAGTCTCT AAAATCTTAA AAGTAATAGG
ATTTGTGAAT TGGGGTACAA CTTCTCTTAT AACAATATTA AAACCAATTC GTATTTTGTA AAAGCAGTTG GTGTAGATGA
AAAAGGAGCA TTATTCTGGT TGTGATGGGC GAAGTACTTG TTGTTGAGCG GCGGTGCAGA CCTGTCATCA AAATTGAAAA
CCTCGTATCC CTTTCGGTCA TAATCTCGTT GCTGACTGAC TTACGGTGTT TGGACATTTT TATTTTTTAT TAGAATTATT
TTGTAATAAC TTTATTATTA TAAAATCCTT TTTTAAAAAT GAGCTGGGAA AAAATAGAAA TAAAAAGAGT AAAGAAAAGT
A

>Vigan.08G243300.01
AACTCCTTAT CCTCCTCACC CTCATTTTCT ATTTCTCTCT CCCTTTTCTC TCTCTGTCTC TGCCAACTAC AAACAACTAC
ACAGCACGAC CTCGCTATTC CAATGGGGTC TCAGATCTAG ACGCTGCTCT GTTTCTGGTA TTCCTGTTCA TATTGTTGCT
ATTGTTGTTC ATCTCGCTTC CAGAACCACA GCGTTTTGGG TCATATTCCA TTCGACATGC GGCCCAAACT AGCCTACTCC
TTCCCTGAGG AGGTGCTGGA GCACGTGTTC TCCTTTATCG AGTGCGATAA GGACCGTGGC TCGATCTCCC TCGTCTGCAA
GTCCTGGTAT GAGATCGAGC GTTGGTGCCG CCGGAGAGTC TTCGTCGGAA ACTGCTACGC TGTCTCTCCG GCCACCGTTG
TCAACCGCTT CCCCAAAGTG AGATCCATCA CCATCAAGGG CAAGCCGCAC TTCGCGGACT TCAATTTGGT CCCCGAGGGT
TGGGGCGCTT ACGTCGGCCC TTGGATCAAG GCCATGGCGG CTGCCTACCC CTGGCTCCAG GAGATCAGGC TTAAGAGGAT
GGTCGTCACC GACGAATGCT TGGAACTTAT CGCCAAATCG TTCAAGAACT TCGGAGTGCT GGTGCTCACT TCTTGCGAGG
GTTTCACCAC TGATGGGCTT GCTGCCATTG CCGCCCATTG CAGGAATTTG AGGGAGTTGG AGTTGCGGGA GAGTGAAGTG
GAAGACATTT GTGGACACTG GCTTAGCCAT TTTCCCGATT CGTACACATC CTTGGTTTCC CTTAATATTT CTTGCTTAGG
CAATGAGGTG AATTTGTCTG CCCTAGAGCG TCTGGTTAGT AGGTGTCCCA ATCTGCAGAC TCTCCGCCTC AACCGTGCTG
TGCCCCTAGA TAAGCTGGCC AACCTTCTTC GCGGAGCTCC TCAGTTAGTT GAGTTAGGCA CAGGAGCCTA CACGAGTGAG
ATGCGGCCGG AGGTCTTTTC AAACCTGGCT GAAGCATTTG CTGGGTGCAG GCAATTAAAA AGCTTGTCAG GATTTTGGGA
CGTGCTACCC TCCTACCTTC CAGCTGTTTA TCCTATCTGC TCCAACCTGA CATCACTAAA CATGAGTTAT GCAACTATTC
AAAGCCCTGA TCTTATCAAG CTTGTTAGTC AGTGTGAAAA TTTACAACGG TTATGGGTGT TGGATTACAT TGAAGATGCT
GGCCTTGAAG TGATTGCTGC ATCGTGTAAG GATCTGAGGG AGTTGAGGGT GTTTCCGTCT GATCCATTTG GGTTAGAACC
AAATGTGGCA TTGACTGAGC AGGGCCTTGT TTCTGTGTCT GAAGGCTGCT CCAAGCTCCA GTCCGTTCTA TATTTTTGTC
GTCAAATGTC TAATGTGGCC TTGCTTACAA TTGCCAGGAA CAGGCCTAAT ATGACTCGTT TTAGACTGTG TATTATTGAG
CCGCAAGTTC CAGACTATCT TACCCAAGAT CCTCTGGATG CTGGTTTTGG AGCTATTGTA GAGCATTGCA AGGATCTTCG
TCGCCTTTCC CTTTCCGGGC TTCTCACTGA CCGCGTTTTT GAGTATATTG GGACTTACGG TAAGAAGCTT GAGATGCTTT
CTGTGGCTTT TGCCGGAGAT AGCGATTTGG GACTCCATCA TGTGCTGTCT GGGTGTGACA ACCTTAGGAA GCTGGAGATC
AGGGACTGCC CCTTTGGTGA CAAAGCCCTT TTAGCCAATG CTGCAAAGCT GGAGACAATG CGATCCCTTT GGATGTCCTC
TTGCTTGGTG AGTTATGGAG CATGTAAACT TCTGGGTCAG AAAATGCCGA TGCTTAATGT TGAAGTGATT GATGAAAGAG
GACCTCCAGA TTCAAGGCCG GATAGTAGTC CTGTTGAGAA GCTATACATA TACAGGACTG TTTCTGGGCC AAGATTGGAC
ATGCCAGGCT ATGTATGGAG AATGGAAGGC GATTCTGCAT TAAGAATTTC TTGAGTGATT TTGCTGTGGA ACGAGCATGG
AATTTATTAT GACAGTTTGA TGTGAGAGTT GTTGATGCAG GTACATGCCT AGAACTGTTG CTGTTATGGT TGGTGTTTGA
GCTAGGTACA GGAGGAGGTA TATAATATGG AAAGGCTGGA GCTCGATAGC CATTCGTTTT ACTCTTTGGC TGAGCAACGA
GACACCAATG CTGATAAAGA GATCGGAACC TTGTTGTTAG ATGTGGCATA GGATAGTTTT TATTATTTAT GGACCTGTGC
ATACTTTTAT ATGCATGTTA CCCCGCTCTT CTAAAATATC GGTGGACTTT GTTATTATCA TTAAAAATTA TGCGGTGGGA
AGGAATAAAA AAACTTGGAA CTATATTCTA ATGCAAACCT TATTTGTTGT TTGCAACAAT GTTGAAGCAT CTGATTTAAT
TATGCCATGT TTTCTTTTGT TCTATTCAGA ATCGATTGGT GCTGTGACAA CAGAGTCTAC GCATGTGAAT GGAGAGAGAA
ATGGCTCAAC CAGTGGAAAG GTTTCTGCAT TTTAAATGTG CGGTTCCAGA CTTTCGATCG ATTTTTACTT AAATATATGC
ATTCAATTTC ATTTTGGTTG CCAACGCCAG GCTTTGTGAT AACTTTTTTC GTTCAAGAGA ATCGTTAAAG CTGAAGATAG
TAGTATTACA CGCAAATTAA CCCCAGTAAA ATTCACCTGT ATGCTTGTTC TACTGAGGAA CCGGTGATGG TATCGTCGTT
AAGATGAAGT TCTCTCAGTT TTCGAGGTTT GTTAGCTTTT GATTTTATAA AATAATAAAA GCATAATTTT AAAAGTATAG
TAAAATAGTT AACTTTTTAG AATGAAATCT TTCTCTGAAT TATTTTTCAT ATATGCTATG TAGTCTCTAA AATCTTAAAA
GTAATAGGAT TTGTGAATTG GGGTACAACT TCTCTTATAA CAATATTAAA ACCAATTCGT ATTTTGTAAA AGCAGTTGGT
GTAGATGAAA AAGGAGCATT ATTCTGGTTG TGATGGGCGA AGTACTTGTT GTTGAGCGGC GGTGCAGACC TGTCATCAAA
ATTGAAAACC TCGTATCCCT TTCGGTCATA ATCTCGTTGC TGACTGACTT ACGGTGTTTG GACATTTTTA TTTTTTATTA
GAATTATTTT GTAATAACTT TATTATTATA AAATCCTTTT TTAAAAATGA GCTGGGAAAA AATAGAAATA AAAAGAGTAA
AGAAAAGTA

>Vigan.08G243300.01
ATGCGGCCCA AACTAGCCTA CTCCTTCCCT GAGGAGGTGC TGGAGCACGT GTTCTCCTTT ATCGAGTGCG ATAAGGACCG
TGGCTCGATC TCCCTCGTCT GCAAGTCCTG GTATGAGATC GAGCGTTGGT GCCGCCGGAG AGTCTTCGTC GGAAACTGCT
ACGCTGTCTC TCCGGCCACC GTTGTCAACC GCTTCCCCAA AGTGAGATCC ATCACCATCA AGGGCAAGCC GCACTTCGCG
GACTTCAATT TGGTCCCCGA GGGTTGGGGC GCTTACGTCG GCCCTTGGAT CAAGGCCATG GCGGCTGCCT ACCCCTGGCT
CCAGGAGATC AGGCTTAAGA GGATGGTCGT CACCGACGAA TGCTTGGAAC TTATCGCCAA ATCGTTCAAG AACTTCGGAG
TGCTGGTGCT CACTTCTTGC GAGGGTTTCA CCACTGATGG GCTTGCTGCC ATTGCCGCCC ATTGCAGGAA TTTGAGGGAG
TTGGAGTTGC GGGAGAGTGA AGTGGAAGAC ATTTGTGGAC ACTGGCTTAG CCATTTTCCC GATTCGTACA CATCCTTGGT
TTCCCTTAAT ATTTCTTGCT TAGGCAATGA GGTGAATTTG TCTGCCCTAG AGCGTCTGGT TAGTAGGTGT CCCAATCTGC
AGACTCTCCG CCTCAACCGT GCTGTGCCCC TAGATAAGCT GGCCAACCTT CTTCGCGGAG CTCCTCAGTT AGTTGAGTTA
GGCACAGGAG CCTACACGAG TGAGATGCGG CCGGAGGTCT TTTCAAACCT GGCTGAAGCA TTTGCTGGGT GCAGGCAATT
AAAAAGCTTG TCAGGATTTT GGGACGTGCT ACCCTCCTAC CTTCCAGCTG TTTATCCTAT CTGCTCCAAC CTGACATCAC
TAAACATGAG TTATGCAACT ATTCAAAGCC CTGATCTTAT CAAGCTTGTT AGTCAGTGTG AAAATTTACA ACGGTTATGG
GTGTTGGATT ACATTGAAGA TGCTGGCCTT GAAGTGATTG CTGCATCGTG TAAGGATCTG AGGGAGTTGA GGGTGTTTCC
GTCTGATCCA TTTGGGTTAG AACCAAATGT GGCATTGACT GAGCAGGGCC TTGTTTCTGT GTCTGAAGGC TGCTCCAAGC
TCCAGTCCGT TCTATATTTT TGTCGTCAAA TGTCTAATGT GGCCTTGCTT ACAATTGCCA GGAACAGGCC TAATATGACT
CGTTTTAGAC TGTGTATTAT TGAGCCGCAA GTTCCAGACT ATCTTACCCA AGATCCTCTG GATGCTGGTT TTGGAGCTAT
TGTAGAGCAT TGCAAGGATC TTCGTCGCCT TTCCCTTTCC GGGCTTCTCA CTGACCGCGT TTTTGAGTAT ATTGGGACTT
ACGGTAAGAA GCTTGAGATG CTTTCTGTGG CTTTTGCCGG AGATAGCGAT TTGGGACTCC ATCATGTGCT GTCTGGGTGT
GACAACCTTA GGAAGCTGGA GATCAGGGAC TGCCCCTTTG GTGACAAAGC CCTTTTAGCC AATGCTGCAA AGCTGGAGAC
AATGCGATCC CTTTGGATGT CCTCTTGCTT GGTGAGTTAT GGAGCATGTA AACTTCTGGG TCAGAAAATG CCGATGCTTA
ATGTTGAAGT GATTGATGAA AGAGGACCTC CAGATTCAAG GCCGGATAGT AGTCCTGTTG AGAAGCTATA CATATACAGG
ACTGTTTCTG GGCCAAGATT GGACATGCCA GGCTATGTAT GGAGAATGGA AGGCGATTCT GCATTAAGAA TTTCTTGA

>Vigan.08G243300.01
MRPKLAYSFP EEVLEHVFSF IECDKDRGSI SLVCKSWYEI ERWCRRRVFV GNCYAVSPAT VVNRFPKVRS ITIKGKPHFA
DFNLVPEGWG AYVGPWIKAM AAAYPWLQEI RLKRMVVTDE CLELIAKSFK NFGVLVLTSC EGFTTDGLAA IAAHCRNLRE
LELRESEVED ICGHWLSHFP DSYTSLVSLN ISCLGNEVNL SALERLVSRC PNLQTLRLNR AVPLDKLANL LRGAPQLVEL
GTGAYTSEMR PEVFSNLAEA FAGCRQLKSL SGFWDVLPSY LPAVYPICSN LTSLNMSYAT IQSPDLIKLV SQCENLQRLW
VLDYIEDAGL EVIAASCKDL RELRVFPSDP FGLEPNVALT EQGLVSVSEG CSKLQSVLYF CRQMSNVALL TIARNRPNMT
RFRLCIIEPQ VPDYLTQDPL DAGFGAIVEH CKDLRRLSLS GLLTDRVFEY IGTYGKKLEM LSVAFAGDSD LGLHHVLSGC
DNLRKLEIRD CPFGDKALLA NAAKLETMRS LWMSSCLVSY GACKLLGQKM PMLNVEVIDE RGPPDSRPDS SPVEKLYIYR
TVSGPRLDMP GYVWRMEGDS ALRIS*