GBrowse Details

Vigan.08G229100.01

Basic Information:
Name: Vigan.08G229100.01
Multiple alignment
Variant Information
Position: Chr08:21291471..21292835 (- strand)
Length: 1365
Functional Information:
Description: Similar to photosystem II reaction center W protein, chloroplastic-like. [XP_004493748.1, Cicer arietinum]
GO: Biological Process: photosynthesis (GO:0015979)
Cellular Component: chloroplast (GO:0009507)
Cellular Component: photosystem II (GO:0009523)
InterPro: Photosystem II PsbW, class 2 (IPR009806)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:40.13,47.63,208.38,1011.03,1.13,540.31,29.59,244.88
Arabidopsis thaliana homolog: AT2G30570.1
Automatic updates:
Name: NM_001249755 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305788 (LOC100305788), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:21291471..21291832 (- strand)
Length: 362
Type: three_prime_UTR
Position: Chr08:21291833..21292146 (- strand)
Length: 314
Type: CDS
Position: Chr08:21292383..21292470 (- strand)
Length: 88
Type: CDS
Position: Chr08:21292471..21292835 (- strand)
Length: 365
Type: five_prime_UTR

>Vigan.08G229100.01 class=Sequence position=Chr08:21291471..21292835 (- strand)
AAATAGTTGT TATTGGATGA TAATTACTGC TTGATCATTT TTCTCTTATT AAATAATTAG TTCAATTAAC AAAAAAAAAG
TTTGTTCCAA CTTCCTAAAA TCAGCTTAGA TGAATGAGGA GAAAGTTGAT CATCAAATGG ATTAATTGAC ACATGGCTGG
AAATGATTGG ATTGCTGAAG ATAAGGATAT CTAACAAGGG GCCACGAATC TATCCATGTT TTGTGGTGTA TAGGACTCTC
TTTGGATCGG TGATATTAAC TTGAACATTA GGTTTGGTAC TAAGCTGGTA CCCTTACTCT TTACAGCCAG ATCATACTCT
ACCACTTCAG TTCCACACTC TGATCATTCG TAGTTACTGA AAAAAATGGC AACCATCTCC GCTGCTACCA CCACCCCCTC
GATCACATGT CTTGTGCAAA AGCGGCCTCT TGGGGTCTCA TCTTCTGTTC TTGGTTTGTC TTTTCTCATC CTAATTTGCC
ATTGTAAATA ACGACTTTAA GCTCTTTCAT GTCTGATTTC TTCAACATGC CATGCAACCA GAAAGTAAAT AAGTAAAGCT
TGAGAGTTTT GGTTATCTTA TCTGGATGGA TGAGAATTTT AAGATACATG TTTTAATTGA TTGTTTGGTT TAGAATAATG
ATTTCTGATG CAGCAACCCT TTTCTTAAGC ATTAAATTAT TTTATGTAGG ATTGCCAACA ATGGGTAAGG TGGGAAGAGT
GAGGTGCTCC ATGGAGGAAA AACCTTCTGT AAAGGAAGCA AGCAGCTCAA GCATGGTGAT GGGAGCATCT TTGATGGCAG
CCACCTGTGC TGCAGTCATG TCAGGCCCAG CCATGGCCTT GGTGGATGAG AGACTAAGCA CTGAAGGAAC CGGGCTTCCC
TTTGGGCTTA GCAACAACCT TCTTGGTTGG ATCCTGTTGG GTGTCTTTGC TCTTGTATGG GCTCTCTTCT TTGTCTACAC
TTCAACTCTT GAGGAGGATG AAGAGTCGGG ATTGTCCCTT TAAATTCTGG ATTCATCTTC TGTTGTGTTA AAACAAACTT
GTGTGCTTAA TTTCTTCTCC TTTCTTTCAA CTTCAACACA ATCTTCACCA CTCCTACTTC TTTCTGTTGT CTGTTCAATT
CTTCACACAC TAAATAACAT GAACAGCTAC TCCACGGTGG AAGTGTAAAG TGGACGAGTA GAAGAAGAAG CATTTGTGGC
GCTTAAAGAA TCAATTTAAG AAATGCTAGA ACCAATGTTT TCAATTAATT TTCCAAATCG CAATTAACCA AGAACCAAAT
TGCAATAACT ACACCTATTA CTTATATTTC TTTCGACCAT AGAGTGCAGA TCTGGTTAAT TGTAATAATT TAAAATAAAA
TTATA

>Vigan.08G229100.01
AAATAGTTGT TATTGGATGA TAATTACTGC TTGATCATTT TTCTCTTATT AAATAATTAG TTCAATTAAC AAAAAAAAAG
TTTGTTCCAA CTTCCTAAAA TCAGCTTAGA TGAATGAGGA GAAAGTTGAT CATCAAATGG ATTAATTGAC ACATGGCTGG
AAATGATTGG ATTGCTGAAG ATAAGGATAT CTAACAAGGG GCCACGAATC TATCCATGTT TTGTGGTGTA TAGGACTCTC
TTTGGATCGG TGATATTAAC TTGAACATTA GGTTTGGTAC TAAGCTGGTA CCCTTACTCT TTACAGCCAG ATCATACTCT
ACCACTTCAG TTCCACACTC TGATCATTCG TAGTTACTGA AAAAAATGGC AACCATCTCC GCTGCTACCA CCACCCCCTC
GATCACATGT CTTGTGCAAA AGCGGCCTCT TGGGGTCTCA TCTTCTGTTC TTGGATTGCC AACAATGGGT AAGGTGGGAA
GAGTGAGGTG CTCCATGGAG GAAAAACCTT CTGTAAAGGA AGCAAGCAGC TCAAGCATGG TGATGGGAGC ATCTTTGATG
GCAGCCACCT GTGCTGCAGT CATGTCAGGC CCAGCCATGG CCTTGGTGGA TGAGAGACTA AGCACTGAAG GAACCGGGCT
TCCCTTTGGG CTTAGCAACA ACCTTCTTGG TTGGATCCTG TTGGGTGTCT TTGCTCTTGT ATGGGCTCTC TTCTTTGTCT
ACACTTCAAC TCTTGAGGAG GATGAAGAGT CGGGATTGTC CCTTTAAATT CTGGATTCAT CTTCTGTTGT GTTAAAACAA
ACTTGTGTGC TTAATTTCTT CTCCTTTCTT TCAACTTCAA CACAATCTTC ACCACTCCTA CTTCTTTCTG TTGTCTGTTC
AATTCTTCAC ACACTAAATA ACATGAACAG CTACTCCACG GTGGAAGTGT AAAGTGGACG AGTAGAAGAA GAAGCATTTG
TGGCGCTTAA AGAATCAATT TAAGAAATGC TAGAACCAAT GTTTTCAATT AATTTTCCAA ATCGCAATTA ACCAAGAACC
AAATTGCAAT AACTACACCT ATTACTTATA TTTCTTTCGA CCATAGAGTG CAGATCTGGT TAATTGTAAT AATTTAAAAT
AAAATTATA

>Vigan.08G229100.01
ATGGCAACCA TCTCCGCTGC TACCACCACC CCCTCGATCA CATGTCTTGT GCAAAAGCGG CCTCTTGGGG TCTCATCTTC
TGTTCTTGGA TTGCCAACAA TGGGTAAGGT GGGAAGAGTG AGGTGCTCCA TGGAGGAAAA ACCTTCTGTA AAGGAAGCAA
GCAGCTCAAG CATGGTGATG GGAGCATCTT TGATGGCAGC CACCTGTGCT GCAGTCATGT CAGGCCCAGC CATGGCCTTG
GTGGATGAGA GACTAAGCAC TGAAGGAACC GGGCTTCCCT TTGGGCTTAG CAACAACCTT CTTGGTTGGA TCCTGTTGGG
TGTCTTTGCT CTTGTATGGG CTCTCTTCTT TGTCTACACT TCAACTCTTG AGGAGGATGA AGAGTCGGGA TTGTCCCTTT
AA

>Vigan.08G229100.01
MATISAATTT PSITCLVQKR PLGVSSSVLG LPTMGKVGRV RCSMEEKPSV KEASSSSMVM GASLMAATCA AVMSGPAMAL
VDERLSTEGT GLPFGLSNNL LGWILLGVFA LVWALFFVYT STLEEDEESG LSL*