GBrowse Details

Vigan.08G217500.01

Basic Information:
Name: Vigan.08G217500.01
Multiple alignment
Variant Information
Position: Chr08:19771543..19776892 (+ strand)
Length: 5350
Functional Information:
Description: Similar to Uncharacterized protein. [I1LYN0, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: metal ion binding (GO:0046872)
InterPro: Succinyl-CoA synthetase, beta subunit (IPR005809)
ATP-citrate lyase/succinyl-CoA ligase (IPR005811)
ATP-grasp fold (IPR011761)
ATP-grasp fold, succinyl-CoA synthetase-type (IPR013650)
ATP-grasp fold, subdomain 1 (IPR013815)
ATP-grasp fold, subdomain 2 (IPR013816)
Succinyl-CoA synthetase-like (IPR016102)
Succinyl-CoA synthetase, beta subunit, conserved site (IPR017866)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:19.92,21.90,60.53,43.32,79.25,36.75, 70.03,40.01
Arabidopsis thaliana homolog: AT2G20420.1
Structure :
Position: Chr08:19771543..19771717 (+ strand)
Length: 175
Type: five_prime_UTR
Position: Chr08:19771718..19771819 (+ strand)
Length: 102
Type: CDS
Position: Chr08:19772075..19772185 (+ strand)
Length: 111
Type: CDS
Position: Chr08:19772397..19772508 (+ strand)
Length: 112
Type: CDS
Position: Chr08:19772754..19772818 (+ strand)
Length: 65
Type: CDS
Position: Chr08:19773476..19773553 (+ strand)
Length: 78
Type: CDS
Position: Chr08:19773678..19773752 (+ strand)
Length: 75
Type: CDS
Position: Chr08:19773849..19774001 (+ strand)
Length: 153
Type: CDS
Position: Chr08:19774085..19774219 (+ strand)
Length: 135
Type: CDS
Position: Chr08:19775384..19775548 (+ strand)
Length: 165
Type: CDS
Position: Chr08:19775708..19775830 (+ strand)
Length: 123
Type: CDS
Position: Chr08:19776260..19776331 (+ strand)
Length: 72
Type: CDS
Position: Chr08:19776420..19776497 (+ strand)
Length: 78
Type: CDS
Position: Chr08:19776498..19776892 (+ strand)
Length: 395
Type: three_prime_UTR

>Vigan.08G217500.01 class=Sequence position=Chr08:19771543..19776892 (+ strand)
GTTTTTTCAC TTTTTTTTTT AAAAACAAAG AAATTGTTAG GGTCTTGGCG TCTGCCACAG ACTGCGCAGT GTTTGAACGT
TGAAGGGAGC ATAAAACGCA GAGGTTTTCT CACTGTTCAA ACGAATCGAA TTCCATTTGA TCGTGCCACT CTCGATCTCC
AAATCCGCAA CAACAATGGT GAGGGGATTG CTCAACAAGC TCGTCTCTCG CTCTCTCTCC GTCGCTGGAA AATGGCAGCA
CCACCAACTC CGCCGCCTCA ACATCCACGA GTACCAGGTC TATCTCTGTT TTCCTACCTG ACCGTTATGG ATATTATTAC
GATTTACAAA TCAATTCGGA ATCTGTTCCC AGAGATGCCT CTCACGGAAT CTGTTCTTAA CAAATGATGC CTTATAGTTT
CTATGGATAA TGAATCTGGA GTTCCTTCGA TATATAATTT GTGAAATTGT GGATGTTTAT TTGTCGGAGC ACTTTGATTT
ATTGATTGAG CGAGCATCGC GTTTAACGAC AATTGAATTT CCATAAAACT AGGGCGCTGA GTTGATGGGC AAACATGGTG
TGAACGTTCC CAGGGGCGTG GCTGTTTCCT CTGTTGAAGA GGTCAGAAAG GCCATTAAGG ACTTTTTTCC TAATGAAAAA
GAGGTAATCC ATGTCGTAAC TTGATGCTCT CAGAAAATAC TAACAAGTGT ATTTTTTCGA ATTGCAAAGT GCTATGTGTT
TCAATTAATT CCCTTTGTAA AAATAGAAAC CTTAGTTCTG CAAGTTTTTC ATCTGGAAAC GTTATATAAT GTCTTGGCTT
GGGATAGATT GCATGTCACT ATGATGACGA AGTGTAAATC GGATGATTGT GCAGTTGGTG GTTAAGAGTC AAATATTAGC
CGGTGGAAGA GGCTTGGGAA CTTTCAAAAG CGGCCTTCAG GGAGGAGTGC ACATTGTTAA GACTGAGCAG GTTGAAGACT
TAGCTGGTAA TGCATGTCAT CCCTTTATTC CTCTAATTGC AATTTCCTTG TTCTCATTTT ATGGTCTTTT GGCCTTCAAT
ACTAAACTAT GCCCTGTGAC ATAACGTGCT CATATGCATT GATTTATTAA ATTTAATTAA TAGTGGATAT ACTACTCTAT
CATGCGATTT TAAATGATAT TTTTTCTTAG TACTGTTATT ATTTCATTGC TGTCATTGTC ATTATTATTT TTATTATTAT
TATTATTTCA GGGAAGATGC TTGGACAGAT ACTAGTTACC AAACAAACTG GTCCTCAGGG CAAAATAGTT AGCAAGGTTT
GAAATTATAC AACCATTCTC GGGCATTTTC AGTTTCTGCG TATATGCTAG GAATTTCCAT TTCTAGAAAT TGAACATTTG
GTCTGGCAAT GCAATGATAT AAACCTTGAC AGATGTATTA TGCTTGGGTA ATTATTGTTT TTTTTTTCTT TATGGAAAAA
TTTTCCAACC TCATTTGAGC CCCCGACAGG TCTTGTTTCT GTAGTATGTT CTGAGATAAT TTGGTGCTTC CAATCATTAC
TTCAGTTACT TCGCATTTAT AGTTCGGTTT TATGTAGGTT GATTTGAACA CGTAAATTGG TGTAGTCTGG CGTGACTTTT
AGTCCTTGGA TTGGTTAACT GAACATGCTT TCTTTCAAAA TATTTCTATC AATTGTTACT TAAGCTATTA ATTAATAATC
AACTGTGCTA ACCACTTATT CCATTTGATT CCTAACCTGT TGTATTGATA TTGAAAGTAA ATTTCCTGTG AGTAATACCA
AATTGGATAT TCAAATACCT TGTGTAATGC TCATAGTTTC TTTATTCTAA AAACTGGATG TGCAACGCCG TGGCTATTTT
GTTTTATTTT GGGTACCACT CAATTCATTT ATATAGAAAT ATTCACAAAA AGGGGGTTGT TTGTTTTAAC TGCACATTTT
CCATGTTCCA CAGGTTTACT TATGCGAAAA GCTTTCTCTT GTAAATGAGA TGTACTTTGC TATAACTCTG GATCGTACAA
CTGCTGGTCC AGTACGTTTC CTATTTCAAT CTGTTATCTT TGATTTGCTT TATATACAAA GTTAAATTCA TATAACCAAT
AAACTGTTAT ATTACTTATT GCAATTTTTT TTTTTTTATG TTTTTTCTTT TGTAGATTAT AATTGCTTGT AGCAAAGGAG
GAACCAGCAT TGAAGACCTT GCAGAGAAAT TTCCAGACAT GATTATAAAG GTTTGTTATG CATGGTTTTT CTTGTGACGG
TTTGATTTTT TTGCTTGAGC AGTCTTCTTT GCAGGACGCA CCTGATGCAC TCCTTCTTTC TAGTAGGTAC CTGTCGATGT
TTTTGAAGGA ATTACTGATG AAGCTGCTGC AAAGGTTGTT GATGGTTTGG CTCCCAAAGG AGCTGATAGA AATAAGTCAA
TCGAACAAGT GAAGAATTTG TATAAACTTT TTATTGATTG TGACTGCACT CTCTTGGAAG TAAGCATAAG CAAGTTTTAG
TTGTGACTTT ATTCAGAATT ATTTTATGAA GATGTCGCAA AAAAAATGAT TATTTTGAAC AGATCAATCC CATAGCAGAG
ACAGCGGATA ATCAATTGGT GGCTGCTGAT GCTAAGTTGA ATTTTGACGA TAATGCTGCA TATCGTCAAA AAGAGATATT
TGCTCTCCGT GATACAACAC AAGAGGACCC TCGAGAGGTT TACTTCTTAT TTTGTTTGTT TTACCTTACA TGGTGATGGA
GGATTTATTG CCCAAATCCA CTTCATCTTT GCCACTTGGG CCCAGGGGGA TTCAAACCAG CTGAGATTTA ATTGAAAATG
CCTTGGGTTC TAAGAATTAG GTATAGTGTG TTTTTGGGTT AGATCCAAAA CATATTTTAA GTAAGCCCGA CTTGGCATGA
TGCCATGGTA ACCGTTTTTT GTAATTAGTG ATAAATAAGA AAAGTTCTCG ACTTAAAATA GTACCTTTTA CAAAACATGA
TAATATATCT ATTGATATGC TTTCTTTTGA ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT
ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATTGTAACGT TCCTTAGCTT TACTTTCCTA
CTTCTAAATT TTAAGACAGA TATGCAATAT CAACATGCTT AATATTCAGC TTTTTATGGT TTGTCTATAT AGGTTGGCCA
GCCTATTAAT TGGGCTGGGC CTGTGTTCAG GTCAAAAAAT TGGCCTGACC ATATATATTG GGTGGGTTCA TGTTAAGAAA
CCCAGATCAG CCTGTCCAAC CTACACATGT CAGCCTTATT AATGTAGCTA CGCACATTTC TTTCGTGGCA CTGTGCTGCT
TTTGATATGT ATGTGGAGCT TAAGTTTATG GTATACTTAT GGTAAGACAG TGAGATTGTT AGGAAGGCCC AGAAATGCCA
TAAAACCTAA ATGGTTAAAG GAATTTATTG GACGGGGTTA ATACATTAGG ATATTGGGTT GTTGTTTTAA TATTAAATAG
TTTTTATTTA AATTTACTAA AGCCAAATGA TGACACCTGT AGGGTCATTA TTCGATTGTT GGCACCATTT AGGGTATATG
TCCTCCTTAC CTATTATCAT GAAGGGAAAT ATGAATGCTT ATTTTATTAT CTTTCTACTC TTATACTTTA ATGGTAGTCT
TCATGATATT TGCAGTAGGT AGTTCTTTTT TCTTCATAAC AAAGATTCTA TGTGGCAAAG CCAGTTTCAT CTGATCTATT
TATGGCGTAT TATTAAGCCT TTATATCCCT GAATCTTCTT TCTTTATTGC GTGTAACATT ATGGTTTTTT TCTCAAAACA
GGTGACTGCT GCAAAGGCAG ACTTAAATTA TATTGGGTTA GATGGAGAAA TTGGCTGCAT GGTGAATGGA GCCGGTTTGG
CAATGGCCAC AATGGATATA ATTAAACTGC ATGGGGGTAC TCCTGCCAAT TTTCTGGATG TTGGTGGGAA TGCCTCTGAA
GGTCAGGTAA GTTCTGGAAG TTGGTATTAC CATTAACCAT TATGATCAAC AACATAATTG TTCTTGTGTC CTTACTCCAA
AAAGACAATT AAAAGACATC GTTTAATATG AATAATCTCC ATCTTATGAT TTTTTGTTCA TATTTAATGC AATTATGTAA
TTCAGGTGAT TGAGGCATTT AAAATATTGA CTGCTGATGA CAAAGTGAAG GCGATTTTGG TTAATATTTT TGGTGGTATA
ATGAAGTGTG ATGTTATAGC AAGTGGAATA GTGAATGCTG CAAAAGAGGT TAGTGAAGCT ATGACTATAT CCACCCCCTC
TCCCTCTCTT TCCACAAACA AATATTAAAA GAAAAAACAA AAAACATGGC TAAGTTTTGT TCCTTCTCTG TGCTACCATA
TTGATGAGAA CGAAGATTAT TTATCTGTTC AGATTAATTT TTTAATCTTA TCTTCATTAT CAATTTAGAC TATGGTTTTA
TGTGGATCTT TTTGATATTG AGAGACCAAA GTGAAGCCAA GAAAATGTAA ATTCTTTATA TTTGACGTCT TTTAACATTT
CAATTTTTGT CTACGATGTT GATGTAAATT GTGGATATTT CAATTTTTGA AATAATGTTT GACATAAAGA ACTACTATCA
TTGTTGTCGA TTGAACATAA TACCTATTTT ATCCTGATAT TATAATAGCA TTAACTTTTC CTGCGATTGT TCTCAAGGTT
GCATTGAAAG TACCAGTAAT TGTTCGTCTG GAAGGCACCA ATGTTGATCA AGGAAAAAGA ATTTTGAAGG TAAATGTTAG
ATTTATTAAT TATAATATAA TGAAAAGTGT TGTTGAAGAG TTGCTTAGTA TGTTTTTTAT TATCAATGGT TCAACAGGAA
AGTGGTATGG CATTAATAAC TGCTGAAGAT TTAGATGATG CTGCCCAAAA AGCAGTGAAA GCTGCTTACA AATGAAGAGT
TGCTTCTCTT TAGATTTAAA ATTCGGTTTA GTTATAACAT TATTCTTCGT ATTAAAACAT TGAGGAGAAA GGGATTGATG
CAAGAAAGCC TTAGTGATTT CATTTTGGCT GCACTGCTTA TCAAAGAGTT TCCAATAAGT TAGTGATTTC CAACTTTTGT
AGTTCGTGTG GGTTGATGCA CGTGGATTAC TTTTTGGCTT CTCTCACAAT TCAAGATACT GGTCCCTTCC TTTCTGATTT
TTCCTGGTTG AAGATACTAC TCTATATTAT GCATATAACA TGGGAAATAC TTGTTTATCT GTTAGACATG GTCGTTCATT
GAGAGGCCAA AACCTGATTC TAAATCGAGG TTATTCAATT TTGGATGTTT AATGACAAAT GTCTTTCTTA 

>Vigan.08G217500.01
GTTTTTTCAC TTTTTTTTTT AAAAACAAAG AAATTGTTAG GGTCTTGGCG TCTGCCACAG ACTGCGCAGT GTTTGAACGT
TGAAGGGAGC ATAAAACGCA GAGGTTTTCT CACTGTTCAA ACGAATCGAA TTCCATTTGA TCGTGCCACT CTCGATCTCC
AAATCCGCAA CAACAATGGT GAGGGGATTG CTCAACAAGC TCGTCTCTCG CTCTCTCTCC GTCGCTGGAA AATGGCAGCA
CCACCAACTC CGCCGCCTCA ACATCCACGA GTACCAGGGC GCTGAGTTGA TGGGCAAACA TGGTGTGAAC GTTCCCAGGG
GCGTGGCTGT TTCCTCTGTT GAAGAGGTCA GAAAGGCCAT TAAGGACTTT TTTCCTAATG AAAAAGAGTT GGTGGTTAAG
AGTCAAATAT TAGCCGGTGG AAGAGGCTTG GGAACTTTCA AAAGCGGCCT TCAGGGAGGA GTGCACATTG TTAAGACTGA
GCAGGTTGAA GACTTAGCTG GGAAGATGCT TGGACAGATA CTAGTTACCA AACAAACTGG TCCTCAGGGC AAAATAGTTA
GCAAGGTTTA CTTATGCGAA AAGCTTTCTC TTGTAAATGA GATGTACTTT GCTATAACTC TGGATCGTAC AACTGCTGGT
CCAATTATAA TTGCTTGTAG CAAAGGAGGA ACCAGCATTG AAGACCTTGC AGAGAAATTT CCAGACATGA TTATAAAGGT
ACCTGTCGAT GTTTTTGAAG GAATTACTGA TGAAGCTGCT GCAAAGGTTG TTGATGGTTT GGCTCCCAAA GGAGCTGATA
GAAATAAGTC AATCGAACAA GTGAAGAATT TGTATAAACT TTTTATTGAT TGTGACTGCA CTCTCTTGGA AATCAATCCC
ATAGCAGAGA CAGCGGATAA TCAATTGGTG GCTGCTGATG CTAAGTTGAA TTTTGACGAT AATGCTGCAT ATCGTCAAAA
AGAGATATTT GCTCTCCGTG ATACAACACA AGAGGACCCT CGAGAGGTGA CTGCTGCAAA GGCAGACTTA AATTATATTG
GGTTAGATGG AGAAATTGGC TGCATGGTGA ATGGAGCCGG TTTGGCAATG GCCACAATGG ATATAATTAA ACTGCATGGG
GGTACTCCTG CCAATTTTCT GGATGTTGGT GGGAATGCCT CTGAAGGTCA GGTGATTGAG GCATTTAAAA TATTGACTGC
TGATGACAAA GTGAAGGCGA TTTTGGTTAA TATTTTTGGT GGTATAATGA AGTGTGATGT TATAGCAAGT GGAATAGTGA
ATGCTGCAAA AGAGGTTGCA TTGAAAGTAC CAGTAATTGT TCGTCTGGAA GGCACCAATG TTGATCAAGG AAAAAGAATT
TTGAAGGAAA GTGGTATGGC ATTAATAACT GCTGAAGATT TAGATGATGC TGCCCAAAAA GCAGTGAAAG CTGCTTACAA
ATGAAGAGTT GCTTCTCTTT AGATTTAAAA TTCGGTTTAG TTATAACATT ATTCTTCGTA TTAAAACATT GAGGAGAAAG
GGATTGATGC AAGAAAGCCT TAGTGATTTC ATTTTGGCTG CACTGCTTAT CAAAGAGTTT CCAATAAGTT AGTGATTTCC
AACTTTTGTA GTTCGTGTGG GTTGATGCAC GTGGATTACT TTTTGGCTTC TCTCACAATT CAAGATACTG GTCCCTTCCT
TTCTGATTTT TCCTGGTTGA AGATACTACT CTATATTATG CATATAACAT GGGAAATACT TGTTTATCTG TTAGACATGG
TCGTTCATTG AGAGGCCAAA ACCTGATTCT AAATCGAGGT TATTCAATTT TGGATGTTTA ATGACAAATG TCTTTCTTA

>Vigan.08G217500.01
ATGGTGAGGG GATTGCTCAA CAAGCTCGTC TCTCGCTCTC TCTCCGTCGC TGGAAAATGG CAGCACCACC AACTCCGCCG
CCTCAACATC CACGAGTACC AGGGCGCTGA GTTGATGGGC AAACATGGTG TGAACGTTCC CAGGGGCGTG GCTGTTTCCT
CTGTTGAAGA GGTCAGAAAG GCCATTAAGG ACTTTTTTCC TAATGAAAAA GAGTTGGTGG TTAAGAGTCA AATATTAGCC
GGTGGAAGAG GCTTGGGAAC TTTCAAAAGC GGCCTTCAGG GAGGAGTGCA CATTGTTAAG ACTGAGCAGG TTGAAGACTT
AGCTGGGAAG ATGCTTGGAC AGATACTAGT TACCAAACAA ACTGGTCCTC AGGGCAAAAT AGTTAGCAAG GTTTACTTAT
GCGAAAAGCT TTCTCTTGTA AATGAGATGT ACTTTGCTAT AACTCTGGAT CGTACAACTG CTGGTCCAAT TATAATTGCT
TGTAGCAAAG GAGGAACCAG CATTGAAGAC CTTGCAGAGA AATTTCCAGA CATGATTATA AAGGTACCTG TCGATGTTTT
TGAAGGAATT ACTGATGAAG CTGCTGCAAA GGTTGTTGAT GGTTTGGCTC CCAAAGGAGC TGATAGAAAT AAGTCAATCG
AACAAGTGAA GAATTTGTAT AAACTTTTTA TTGATTGTGA CTGCACTCTC TTGGAAATCA ATCCCATAGC AGAGACAGCG
GATAATCAAT TGGTGGCTGC TGATGCTAAG TTGAATTTTG ACGATAATGC TGCATATCGT CAAAAAGAGA TATTTGCTCT
CCGTGATACA ACACAAGAGG ACCCTCGAGA GGTGACTGCT GCAAAGGCAG ACTTAAATTA TATTGGGTTA GATGGAGAAA
TTGGCTGCAT GGTGAATGGA GCCGGTTTGG CAATGGCCAC AATGGATATA ATTAAACTGC ATGGGGGTAC TCCTGCCAAT
TTTCTGGATG TTGGTGGGAA TGCCTCTGAA GGTCAGGTGA TTGAGGCATT TAAAATATTG ACTGCTGATG ACAAAGTGAA
GGCGATTTTG GTTAATATTT TTGGTGGTAT AATGAAGTGT GATGTTATAG CAAGTGGAAT AGTGAATGCT GCAAAAGAGG
TTGCATTGAA AGTACCAGTA ATTGTTCGTC TGGAAGGCAC CAATGTTGAT CAAGGAAAAA GAATTTTGAA GGAAAGTGGT
ATGGCATTAA TAACTGCTGA AGATTTAGAT GATGCTGCCC AAAAAGCAGT GAAAGCTGCT TACAAATGA

>Vigan.08G217500.01
MVRGLLNKLV SRSLSVAGKW QHHQLRRLNI HEYQGAELMG KHGVNVPRGV AVSSVEEVRK AIKDFFPNEK ELVVKSQILA
GGRGLGTFKS GLQGGVHIVK TEQVEDLAGK MLGQILVTKQ TGPQGKIVSK VYLCEKLSLV NEMYFAITLD RTTAGPIIIA
CSKGGTSIED LAEKFPDMII KVPVDVFEGI TDEAAAKVVD GLAPKGADRN KSIEQVKNLY KLFIDCDCTL LEINPIAETA
DNQLVAADAK LNFDDNAAYR QKEIFALRDT TQEDPREVTA AKADLNYIGL DGEIGCMVNG AGLAMATMDI IKLHGGTPAN
FLDVGGNASE GQVIEAFKIL TADDKVKAIL VNIFGGIMKC DVIASGIVNA AKEVALKVPV IVRLEGTNVD QGKRILKESG
MALITAEDLD DAAQKAVKAA YK*