GBrowse Details

Vigan.08G187800.01

Basic Information:
Name: Vigan.08G187800.01
Multiple alignment
Variant Information
Position: Chr08:16648679..16649850 (- strand)
Length: 1172
Functional Information:
Description: Similar to Uncharacterized protein. [C7S8D1, Glycine max]
GO: Molecular Function: manganese ion binding (GO:0030145)
Molecular Function: nutrient reservoir activity (GO:0045735)
InterPro: Germin (IPR001929)
Cupin 1 (IPR006045)
RmlC-like cupin domain (IPR011051)
RmlC-like jelly roll fold (IPR014710)
Germin, manganese binding site (IPR019780)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.11,0.69,20.01,21.01,10.40,90.14,42 .99,188.16
Arabidopsis thaliana homolog: AT3G62020.1
Automatic updates:
Name: NM_001254649 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cupin family protein (GMCUPIN10.4), mRNA.
PubMed ID: 25360675 NCBI(pubmed)
21059215 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:16648679..16648960 (- strand)
Length: 282
Type: three_prime_UTR
Position: Chr08:16648961..16649508 (- strand)
Length: 548
Type: CDS
Position: Chr08:16649643..16649757 (- strand)
Length: 115
Type: CDS
Position: Chr08:16649758..16649850 (- strand)
Length: 93
Type: five_prime_UTR

>Vigan.08G187800.01 class=Sequence position=Chr08:16648679..16649850 (- strand)
AAACATTCCA CTATTATCTC TAATCATATC AAAAATACCT TTCTCTAACG CTTACTCTTG CAAATAGTTC AATCATCATT
CCAAGTCCAA ACCATGTTGC CAACAAACAC TTATGCAATT TTTGTCATCT TCTGTTGTGC CTTCTCCTTT GCCTTCGCTT
CTGACCCTGA CACACTTCAA GACCTTTGTG TCGCACTTCC CTCTTCAGGT AATAATATGC ATATATTACT ATTCACCGCC
ATTTTAGTTT CTCTCTCTGC TCTTATAGCT CAAATAAATA TGCCAAAGTT GTGTTTAGGA AAATAGTGCA GTAACCAGTG
GTGTGTAATT AATTGTGTTC AGGTGTGAAG GTGAATGGTT TTGCCTGCAA GGCAGAGACG AATGTGACAG AAGCTGATTT
CTTCTTTGCT GGTTTAGCCA AACCTGGAGT TATCAACAAC ACATTGGGAT CTTTGGTTAC TGCAGCCAAT GTAGAAAAAA
TTCCAGGACT TAACACATTG GGAGTGTCTT TCTCTAGAAT AGACTATAAA GCTGGGGGAC TTAACCCACC TCACACACAC
CCTCGTGCCA CTGAGATTGT GTTTGTGTTA GAAGGTCAAT TAGACGTGGG GTTTATCACC ACAGCCAACA AACTCATCTC
AAAGTCCATT AAGAAAGGTG AAATCTTTGT GTTCCCTAAA GGTTTGGTGC ATTATCAGAA GAACAGTGGA GATAAGCCTG
CTTCAGTGCT TTCTGCTTTC AACAGCCAAC TTCCTGGAAC CTTTTCTGTA GCTGCAGCTC TTTTCAGCTC AACACCAACT
GTGCCTGATA ATGTTCTTGC TCAGGCTTTT CAGATTGATA CTAAACAGGT TGATGACATC AAGGCCAAGC TTGCTCCAAA
GAAGAGTTAA TTTCTTTTTT AAGTTAATTA TGATATTCCA GAGAGAAAGA TTCAGTCTTA TAAGCATATA CTTTTCCGGT
AATTCTTGAA GGTTTTGTGA TTCATTGTTT CACTTACGCT GTTGTTGTTC TCAGTATGCG GCATCGAGAA TAATGATATA
ATATTGTATC GTGGATTACA TACTACGTGG TTATAGTGAT ACGAACTCTA TGATGTCAAA GTTGTCACCT TCTATGTGGT
TACGTATATT CATTTGAATC ATTTTCTGGT TGAATAATAA ATACATTCGA CA

>Vigan.08G187800.01
AAACATTCCA CTATTATCTC TAATCATATC AAAAATACCT TTCTCTAACG CTTACTCTTG CAAATAGTTC AATCATCATT
CCAAGTCCAA ACCATGTTGC CAACAAACAC TTATGCAATT TTTGTCATCT TCTGTTGTGC CTTCTCCTTT GCCTTCGCTT
CTGACCCTGA CACACTTCAA GACCTTTGTG TCGCACTTCC CTCTTCAGGT GTGAAGGTGA ATGGTTTTGC CTGCAAGGCA
GAGACGAATG TGACAGAAGC TGATTTCTTC TTTGCTGGTT TAGCCAAACC TGGAGTTATC AACAACACAT TGGGATCTTT
GGTTACTGCA GCCAATGTAG AAAAAATTCC AGGACTTAAC ACATTGGGAG TGTCTTTCTC TAGAATAGAC TATAAAGCTG
GGGGACTTAA CCCACCTCAC ACACACCCTC GTGCCACTGA GATTGTGTTT GTGTTAGAAG GTCAATTAGA CGTGGGGTTT
ATCACCACAG CCAACAAACT CATCTCAAAG TCCATTAAGA AAGGTGAAAT CTTTGTGTTC CCTAAAGGTT TGGTGCATTA
TCAGAAGAAC AGTGGAGATA AGCCTGCTTC AGTGCTTTCT GCTTTCAACA GCCAACTTCC TGGAACCTTT TCTGTAGCTG
CAGCTCTTTT CAGCTCAACA CCAACTGTGC CTGATAATGT TCTTGCTCAG GCTTTTCAGA TTGATACTAA ACAGGTTGAT
GACATCAAGG CCAAGCTTGC TCCAAAGAAG AGTTAATTTC TTTTTTAAGT TAATTATGAT ATTCCAGAGA GAAAGATTCA
GTCTTATAAG CATATACTTT TCCGGTAATT CTTGAAGGTT TTGTGATTCA TTGTTTCACT TACGCTGTTG TTGTTCTCAG
TATGCGGCAT CGAGAATAAT GATATAATAT TGTATCGTGG ATTACATACT ACGTGGTTAT AGTGATACGA ACTCTATGAT
GTCAAAGTTG TCACCTTCTA TGTGGTTACG TATATTCATT TGAATCATTT TCTGGTTGAA TAATAAATAC ATTCGACA

>Vigan.08G187800.01
ATGTTGCCAA CAAACACTTA TGCAATTTTT GTCATCTTCT GTTGTGCCTT CTCCTTTGCC TTCGCTTCTG ACCCTGACAC
ACTTCAAGAC CTTTGTGTCG CACTTCCCTC TTCAGGTGTG AAGGTGAATG GTTTTGCCTG CAAGGCAGAG ACGAATGTGA
CAGAAGCTGA TTTCTTCTTT GCTGGTTTAG CCAAACCTGG AGTTATCAAC AACACATTGG GATCTTTGGT TACTGCAGCC
AATGTAGAAA AAATTCCAGG ACTTAACACA TTGGGAGTGT CTTTCTCTAG AATAGACTAT AAAGCTGGGG GACTTAACCC
ACCTCACACA CACCCTCGTG CCACTGAGAT TGTGTTTGTG TTAGAAGGTC AATTAGACGT GGGGTTTATC ACCACAGCCA
ACAAACTCAT CTCAAAGTCC ATTAAGAAAG GTGAAATCTT TGTGTTCCCT AAAGGTTTGG TGCATTATCA GAAGAACAGT
GGAGATAAGC CTGCTTCAGT GCTTTCTGCT TTCAACAGCC AACTTCCTGG AACCTTTTCT GTAGCTGCAG CTCTTTTCAG
CTCAACACCA ACTGTGCCTG ATAATGTTCT TGCTCAGGCT TTTCAGATTG ATACTAAACA GGTTGATGAC ATCAAGGCCA
AGCTTGCTCC AAAGAAGAGT TAA

>Vigan.08G187800.01
MLPTNTYAIF VIFCCAFSFA FASDPDTLQD LCVALPSSGV KVNGFACKAE TNVTEADFFF AGLAKPGVIN NTLGSLVTAA
NVEKIPGLNT LGVSFSRIDY KAGGLNPPHT HPRATEIVFV LEGQLDVGFI TTANKLISKS IKKGEIFVFP KGLVHYQKNS
GDKPASVLSA FNSQLPGTFS VAAALFSSTP TVPDNVLAQA FQIDTKQVDD IKAKLAPKKS *