GBrowse Details

Vigan.08G173900.01

Basic Information:
Name: Vigan.08G173900.01
Multiple alignment
Variant Information
Position: Chr08:15534107..15537601 (+ strand)
Length: 3495
Functional Information:
Description: Similar to uncharacterized protein. [C6TAN1, Glycine max]
GO: Biological Process: protein catabolic process (GO:0030163)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: hydrolase activity (GO:0016787)
Molecular Function: nucleoside-triphosphatase activity (GO:0017111)
InterPro: AAA+ ATPase domain (IPR003593)
ATPase, AAA-type, core (IPR003959)
ATPase, AAA-type, conserved site (IPR003960)
26S proteasome subunit P45 (IPR005937)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:209.35,126.52,83.74,76.80,112.06,113 .46,78.57,75.58
Arabidopsis thaliana homolog: AT1G09100.1, AT3G05530.1
Automatic updates:
Name: NM_001255650 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 26S protease regulatory subunit 6A homolog A-like (LOC100798637), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255650 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 26S protease regulatory subunit 6A homolog A-like (LOC100798637), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:15534107..15534265 (+ strand)
Length: 159
Type: five_prime_UTR
Position: Chr08:15534266..15534382 (+ strand)
Length: 117
Type: CDS
Position: Chr08:15534525..15534641 (+ strand)
Length: 117
Type: CDS
Position: Chr08:15534791..15534898 (+ strand)
Length: 108
Type: CDS
Position: Chr08:15535089..15535280 (+ strand)
Length: 192
Type: CDS
Position: Chr08:15535379..15535570 (+ strand)
Length: 192
Type: CDS
Position: Chr08:15535959..15536077 (+ strand)
Length: 119
Type: CDS
Position: Chr08:15536210..15536297 (+ strand)
Length: 88
Type: CDS
Position: Chr08:15536558..15536677 (+ strand)
Length: 120
Type: CDS
Position: Chr08:15536758..15536898 (+ strand)
Length: 141
Type: CDS
Position: Chr08:15537232..15537309 (+ strand)
Length: 78
Type: CDS
Position: Chr08:15537310..15537601 (+ strand)
Length: 292
Type: three_prime_UTR

>Vigan.08G173900.01 class=Sequence position=Chr08:15534107..15537601 (+ strand)
TTATTCATAA CCCTATAAAA ATTCCTTTAC AGAGCAACAA AAGCACGCCT TCGTCTTCGT TGGAAACACT TTAAGTATCG
CAGTTGTCCT TGGTTTTCTC TTTTATCTTT CCCCAAATTG TGAGTGTTAG TGTTGAATCG CTTGAAAGAA GCAATTGAAA
TGGCGAGCGC GATGGTAGAG GATGCGACCT TCGAAGATGA TCAGTTGGCT AATATGACCA CCGACGACGT CGTTAGAGCT
TCACGTCTTC TCGACAACGA GATTCGCATT CTCAAGGTAC AACTTCTTCT TTCTGTTTCG CTTTCTCTAT TTCTGTAACC
CTAACCCTAT CGGTTACGCT ATTAGTTTGC TCTGTTCGAT TTCATCTTCT TAGCGTTAGG GTTTCTGGTT TTGATTGAAA
ATTTTCCCGT GGCTGAAGGA AGAGTTGCAG AGGACCAATT TGGAATTGGA ATCGTACAAG GATAAGATCA AGGAGAATCA
GGAAAAAATT AAGCTCAATA AGCAGTTGCC CTACCTCGTT GGTAACATTG TTGAGGTATA TGTTTTTCGT TTATCTATTT
TAGTTGTTCT ATTGGGGGTT TCTGGAGTTC GAATTCTGAA TATTGTGGAA TCGGATGGAA GAAGTTGTTG TTCATTTGTT
CGCATTCTTA TTGGGTTATT ATGTTGTACT TGTTTTGCAT TTAGATATTG GAAATGAACC CAGAAGACGA GGCTGAAGAA
GATGGTGCAA ATATTGATCT TGATTCGCAA AGGAAGGGGA AGTGTGTTGT CTTGAAGACT TCTACTCGAC AGGTGAAATG
GATGATTATT TTCATATTGT TGGCAAAGGA CATTATTCTT ATTCAAATTT CAAGTCTGCT GTTACTATTT CAAAGTTTTA
GATGGTTGGT TTTGTTATGG CTATTTTTAT CTCGTGCTTT TTGTGAGAAA AGCTATTGGT TTCTGTAATG TCGAGCTTAA
TAATGCTTTC TTTTGATGGC AGACAATCTT TCTTCCTGTT GTTGGGCTTG TTGACCCTGA CAAATTAAAA CCCGGTGATC
TTGTTGGTGT TAACAAGGAT AGTTACTTAA TCTTGGATAC CCTGCCTTCT GAGTATGATT CTAGAGTTAA GGCAATGGAA
GTCGATGAAA AGCCCACAGA AGATTACAAT GACATTGGTG GATTAGAAAA GCAGGTGAGC GTTGATTATT GCCTTAATTT
ATGGAATTCT AGTTTTTTTG GTGTTAGGTA ATGCAATCTC TGAGTTATTC AATAAATTGG TCTTTTCCAC AGATTCAAGA
ATTAGTCGAG GCCATTGTTT TGCCCATGAC CCACAAGGAG CGGTTTCAAA AGTTAGGAGT TCGTCCTCCC AAGGGAGTGC
TGTTATATGG ACCTCCAGGG ACTGGGAAAA CATTGATGGC CCGTGCCTGT GCAGCACAGA CAAATGCCAC TTTTCTGAAA
TTGGCAGGTC CTCAACTGGT CCAGGTATGA CAATCTATTT CTGTTTATTT TTCATTCTTC ACCATTATAT ATCTCTAAGC
ATGAACAATT CTGTTTATAC CAACTGAATG ACTAACTTCT TCTGTCCCTT TTCTAATATA AGTGAATAAT CAGTACATTT
TCCCATTGAT CATTATTGTT CAGTTTCTTT TGGAAAAATT CTTCATATTA TGTATGTCTG GATTTCTTCT TATGTTTTAA
TATTTGGAGT ACTACCTTAA CCTGCATTAA ATAGCACCTG TTTCATCCGA CACATCTGAG TAGACAAGAT TCTTTTCCTC
TATTTCACTT GAACACTGAT ACCTTTGTTG TTTGTATTAG TGCGTATTGA TGAGTTTTCT GTTAGAATGA TCTAACAAGG
AGTTTTATGC AGATGTTCAT AGGAGATGGA GCAAAACTTG TTCGTGATGC CTTTCAACTA GCAAAGGAGA AGTCACCATG
CATTATATTT ATAGATGAAA TTGATGCAAT TGGTACAAAG CGTTTTGATA GGTATTAACC TGCAATAATT TAGATCTACA
TTTTCAATTG ACTGACTACT CCCTCTCTGT CTTGAGAGTG TGTTACTCTA GTTAAAGTGT AGTGGCTCAG CAACCTTTAT
ATATATCTTG TGGCTGATTG CAGTGAAGTA AGTGGAGACA GGGAGGTACA ACGGACAATG TTAGAATTAC TTAATCAGCT
TGATGGTTTT AGCAGTGATG ACAGGATTAA GGTTTACCTT TAATTCTTGT TATTTTTTAT TTTGTGTTGA TGTCATCAAA
CTATGCTTGT TGTCTTCCGG CATAGAGTAA AAGTGCATGC AATTTTTTAA ATCCAATGTT TTGGGGCTGG TTTCTTAATT
CTATAACTTC CATTTATAGC AATGTAAACC GTGAAAATAT TTAGTAGTTG GCATCTAATT TTCTGGATTT TTTGTTATGT
TAGGCAATAA CTTGAAGTTC CATTTTCTTA TTATATTGAT TTAAATTGCA GGTGATAGCA GCAACAAATC GTGCTGATAT
TCTTGACCCT GCCCTTATGC GTTCTGGTCG ATTGGATCGT AAAATTGAGT TTCCACACCC AAGTGAAGAA GCAAGAGCCC
GTATTCTCCA GGTTTGATGT CTTCAGACTT TATCTGCTGA CAAGTATTTG GAACAAAACA CTTACTGACT GCTCTTACTT
TGATATTTTA GATCCATTCA AGGAAGATGA ATGTTCATCC AGATGTGAAC TTTGAAGAAC TCGCACGGTC CACGGATGAT
TTCAATGGAG CACAACTGAA GGCTGTCTGT GTTGAGGCTG GCATGTTGGC TCTACGCCGT GATGCAACTG AGGTTTATCT
TCTTCCAGAT AGGCTAAACT TAAATTAACA TAAACATCAA TGTTTGAAAG AAAATTAGCA CCGTTATTTG TCTGGTCGAT
AGTAATGGTT GGCATTGTTG TTAATGATCC TTTCTGATAA ACACCAACAT AATCCTATGA ACCCTAAGCA TAGCTTCTAG
TTGGAGCGAT TCAGATATCC CTTACCATAC TTATTGTCAA TCTCTTTATA TTTTTTGCCT TTCTGGTTCA ATTTAGTGCC
AAAGCTTCTG ACCATATTAT AGTTTGTTTT TGTATATTTT ACCTGGTGTT GGAATGTTCT TGAAATTTGT TTGTTTTAAA
CGCAGGTGAA CCATGAGGAC TTTAATGAAG GTATTATTCA AGTCCAAGCA AAGAAGAAAG CAAGCCTGAA TTATTATGCA
TAGGCGGGAT TGTGGAGCAA GCTATTTTTC AGTTTACAGC GATCTATTGA GATATCACGA GCCAATGGAA AACCTATGTG
GATGTTTGGC ATTTATTATC TTTCTCTTAT TCTTTTGTCA ATTTGTAGCC GTATGATATA AACCTATAGC ATGCTATAAT
CATCGTATCT TTTAAAAATA CAGCCTAATC GTCAATTTGT TGTTAGTAAT AGAAATTTGA TCGGTTTGCA ATGTCTAAAA
TCTTGTTCAT CAGGCTAATA TGATATTCGA CATGGTAAAC AAACAAGACT TGTGA

>Vigan.08G173900.01
TTATTCATAA CCCTATAAAA ATTCCTTTAC AGAGCAACAA AAGCACGCCT TCGTCTTCGT TGGAAACACT TTAAGTATCG
CAGTTGTCCT TGGTTTTCTC TTTTATCTTT CCCCAAATTG TGAGTGTTAG TGTTGAATCG CTTGAAAGAA GCAATTGAAA
TGGCGAGCGC GATGGTAGAG GATGCGACCT TCGAAGATGA TCAGTTGGCT AATATGACCA CCGACGACGT CGTTAGAGCT
TCACGTCTTC TCGACAACGA GATTCGCATT CTCAAGGAAG AGTTGCAGAG GACCAATTTG GAATTGGAAT CGTACAAGGA
TAAGATCAAG GAGAATCAGG AAAAAATTAA GCTCAATAAG CAGTTGCCCT ACCTCGTTGG TAACATTGTT GAGATATTGG
AAATGAACCC AGAAGACGAG GCTGAAGAAG ATGGTGCAAA TATTGATCTT GATTCGCAAA GGAAGGGGAA GTGTGTTGTC
TTGAAGACTT CTACTCGACA GACAATCTTT CTTCCTGTTG TTGGGCTTGT TGACCCTGAC AAATTAAAAC CCGGTGATCT
TGTTGGTGTT AACAAGGATA GTTACTTAAT CTTGGATACC CTGCCTTCTG AGTATGATTC TAGAGTTAAG GCAATGGAAG
TCGATGAAAA GCCCACAGAA GATTACAATG ACATTGGTGG ATTAGAAAAG CAGATTCAAG AATTAGTCGA GGCCATTGTT
TTGCCCATGA CCCACAAGGA GCGGTTTCAA AAGTTAGGAG TTCGTCCTCC CAAGGGAGTG CTGTTATATG GACCTCCAGG
GACTGGGAAA ACATTGATGG CCCGTGCCTG TGCAGCACAG ACAAATGCCA CTTTTCTGAA ATTGGCAGGT CCTCAACTGG
TCCAGATGTT CATAGGAGAT GGAGCAAAAC TTGTTCGTGA TGCCTTTCAA CTAGCAAAGG AGAAGTCACC ATGCATTATA
TTTATAGATG AAATTGATGC AATTGGTACA AAGCGTTTTG ATAGTGAAGT AAGTGGAGAC AGGGAGGTAC AACGGACAAT
GTTAGAATTA CTTAATCAGC TTGATGGTTT TAGCAGTGAT GACAGGATTA AGGTGATAGC AGCAACAAAT CGTGCTGATA
TTCTTGACCC TGCCCTTATG CGTTCTGGTC GATTGGATCG TAAAATTGAG TTTCCACACC CAAGTGAAGA AGCAAGAGCC
CGTATTCTCC AGATCCATTC AAGGAAGATG AATGTTCATC CAGATGTGAA CTTTGAAGAA CTCGCACGGT CCACGGATGA
TTTCAATGGA GCACAACTGA AGGCTGTCTG TGTTGAGGCT GGCATGTTGG CTCTACGCCG TGATGCAACT GAGGTGAACC
ATGAGGACTT TAATGAAGGT ATTATTCAAG TCCAAGCAAA GAAGAAAGCA AGCCTGAATT ATTATGCATA GGCGGGATTG
TGGAGCAAGC TATTTTTCAG TTTACAGCGA TCTATTGAGA TATCACGAGC CAATGGAAAA CCTATGTGGA TGTTTGGCAT
TTATTATCTT TCTCTTATTC TTTTGTCAAT TTGTAGCCGT ATGATATAAA CCTATAGCAT GCTATAATCA TCGTATCTTT
TAAAAATACA GCCTAATCGT CAATTTGTTG TTAGTAATAG AAATTTGATC GGTTTGCAAT GTCTAAAATC TTGTTCATCA
GGCTAATATG ATATTCGACA TGGTAAACAA ACAAGACTTG TGA

>Vigan.08G173900.01
ATGGCGAGCG CGATGGTAGA GGATGCGACC TTCGAAGATG ATCAGTTGGC TAATATGACC ACCGACGACG TCGTTAGAGC
TTCACGTCTT CTCGACAACG AGATTCGCAT TCTCAAGGAA GAGTTGCAGA GGACCAATTT GGAATTGGAA TCGTACAAGG
ATAAGATCAA GGAGAATCAG GAAAAAATTA AGCTCAATAA GCAGTTGCCC TACCTCGTTG GTAACATTGT TGAGATATTG
GAAATGAACC CAGAAGACGA GGCTGAAGAA GATGGTGCAA ATATTGATCT TGATTCGCAA AGGAAGGGGA AGTGTGTTGT
CTTGAAGACT TCTACTCGAC AGACAATCTT TCTTCCTGTT GTTGGGCTTG TTGACCCTGA CAAATTAAAA CCCGGTGATC
TTGTTGGTGT TAACAAGGAT AGTTACTTAA TCTTGGATAC CCTGCCTTCT GAGTATGATT CTAGAGTTAA GGCAATGGAA
GTCGATGAAA AGCCCACAGA AGATTACAAT GACATTGGTG GATTAGAAAA GCAGATTCAA GAATTAGTCG AGGCCATTGT
TTTGCCCATG ACCCACAAGG AGCGGTTTCA AAAGTTAGGA GTTCGTCCTC CCAAGGGAGT GCTGTTATAT GGACCTCCAG
GGACTGGGAA AACATTGATG GCCCGTGCCT GTGCAGCACA GACAAATGCC ACTTTTCTGA AATTGGCAGG TCCTCAACTG
GTCCAGATGT TCATAGGAGA TGGAGCAAAA CTTGTTCGTG ATGCCTTTCA ACTAGCAAAG GAGAAGTCAC CATGCATTAT
ATTTATAGAT GAAATTGATG CAATTGGTAC AAAGCGTTTT GATAGTGAAG TAAGTGGAGA CAGGGAGGTA CAACGGACAA
TGTTAGAATT ACTTAATCAG CTTGATGGTT TTAGCAGTGA TGACAGGATT AAGGTGATAG CAGCAACAAA TCGTGCTGAT
ATTCTTGACC CTGCCCTTAT GCGTTCTGGT CGATTGGATC GTAAAATTGA GTTTCCACAC CCAAGTGAAG AAGCAAGAGC
CCGTATTCTC CAGATCCATT CAAGGAAGAT GAATGTTCAT CCAGATGTGA ACTTTGAAGA ACTCGCACGG TCCACGGATG
ATTTCAATGG AGCACAACTG AAGGCTGTCT GTGTTGAGGC TGGCATGTTG GCTCTACGCC GTGATGCAAC TGAGGTGAAC
CATGAGGACT TTAATGAAGG TATTATTCAA GTCCAAGCAA AGAAGAAAGC AAGCCTGAAT TATTATGCAT AG

>Vigan.08G173900.01
MASAMVEDAT FEDDQLANMT TDDVVRASRL LDNEIRILKE ELQRTNLELE SYKDKIKENQ EKIKLNKQLP YLVGNIVEIL
EMNPEDEAEE DGANIDLDSQ RKGKCVVLKT STRQTIFLPV VGLVDPDKLK PGDLVGVNKD SYLILDTLPS EYDSRVKAME
VDEKPTEDYN DIGGLEKQIQ ELVEAIVLPM THKERFQKLG VRPPKGVLLY GPPGTGKTLM ARACAAQTNA TFLKLAGPQL
VQMFIGDGAK LVRDAFQLAK EKSPCIIFID EIDAIGTKRF DSEVSGDREV QRTMLELLNQ LDGFSSDDRI KVIAATNRAD
ILDPALMRSG RLDRKIEFPH PSEEARARIL QIHSRKMNVH PDVNFEELAR STDDFNGAQL KAVCVEAGML ALRRDATEVN
HEDFNEGIIQ VQAKKKASLN YYA*