GBrowse Details

Vigan.08G162900.01

Basic Information:
Name: Vigan.08G162900.01
Multiple alignment
Variant Information
Position: Chr08:14554471..14557252 (- strand)
Length: 2782
Functional Information:
Description: Similar to PITH domain-containing protein At3g04780-like. [XP_004495796.1, Cicer arietinum]
GO: Biological Process: glycerol ether metabolic process (GO:0006662)
Biological Process: cell redox homeostasis (GO:0045454)
Molecular Function: protein disulfide oxidoreductase activity (GO:0015035)
InterPro: Thioredoxin (IPR005746)
Galactose-binding domain-like (IPR008979)
PITH domain (IPR010400)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:21.68,22.37,36.02,31.24,53.44,56.51, 66.99,35.70
Arabidopsis thaliana homolog: AT3G04780.1
Automatic updates:
Name: NM_001250812 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305857 (LOC100305857), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:14554471..14555137 (- strand)
Length: 667
Type: three_prime_UTR
Position: Chr08:14555138..14555186 (- strand)
Length: 49
Type: CDS
Position: Chr08:14555714..14555791 (- strand)
Length: 78
Type: CDS
Position: Chr08:14555895..14555941 (- strand)
Length: 47
Type: CDS
Position: Chr08:14556060..14556117 (- strand)
Length: 58
Type: CDS
Position: Chr08:14556202..14556250 (- strand)
Length: 49
Type: CDS
Position: Chr08:14556584..14556707 (- strand)
Length: 124
Type: CDS
Position: Chr08:14556894..14556980 (- strand)
Length: 87
Type: CDS
Position: Chr08:14557074..14557112 (- strand)
Length: 39
Type: CDS
Position: Chr08:14557113..14557252 (- strand)
Length: 140
Type: five_prime_UTR

>Vigan.08G162900.01 class=Sequence position=Chr08:14554471..14557252 (- strand)
TATTAATTTA TGATTACAAA CTAGGAAGTT CCTTATTCGA AGCTGGGTTT GTTTTAGGCC ATTGATATTT GATTCCTCTC
TCTTTCTCTC TCCCTCTCCC TCTCTTTCTC TTTCTTTCTC TCGCAAAAAC CGTATCGACA ATGTCTGGGG AATCAGCCAG
CGCTATTCCA AAGGGTCAAG TAAGATTCAA ACTCAATCAC CATCCTTTTC GATTCGTTCA TAGGGAACCA CGTTCTGATC
TTTTCATCTG TTTTCTTTTT CTTCTTAATT AGGTTGATCT CTTAGATTTC ATAGACTGGT CTGGGGTTGA ATGTCTCAAT
CAAAGCTCCA CCCACTCTCT CTCCAATGCT ATCAAACAGG TTCGTTAGGT TTCCTTTCTT CTCTTTCTCC CCCTATTCCT
CTTCCTCCAT TCTCTATTAT TTTCAATTTA TTTCTTCTTC TCTTTATCGT ATGCAAGTTT TCTGCTTTTT CAAAAGGGTC
CTTGTTAGTG ACAATAAGGG TTCTTGGCTT GCCTGTCTTA TCTTACTGTG TTTGTTAATA AACAGGGTTA TAGAGAAGAT
GAGGGTTTGC ATCTGGAGAG TGATGCAGAT GAACAGCTTT TGCTCTATAT TCCTTTCACA CAAGTTATTA AACTCTACTC
CATTGTTATC AAAGGTCCTG AAGATGAAGG TAACATGTTC ATAAACTTCA AACTATGTCA CTCATTCAAT TGAAGACATG
GACACTAAAA CTTTTTCTCA AGACCCTGTA ATATGCTTTC CTCTCATAGT GGCCAGTGCT TGATAAATTA GATTTAGTCA
ATTCATGTTA GCTGAGATGT AAATATTGCT CAATAAGATG CCCCTACATA TCTTTCCTGT TAGGGAACTT GTAGTCTATT
TTCTGAATTG AGAGATGCTA TTGATTATTA TTTAGCTTGT ATATATGATC TTCACTGATT GCTACTGTAC TTTTTTTTTA
ACGTTGTCTT GGTTATAATT GGGTTGCATT TTCGTCTTTT AGGCCCCAAG ACGGTGAAGT TATTTTCTAA CAAGGAGCAT
ATGGGATTTA GGTATGGTTT TTTTGGCAAA TCTCTTTGTG TCATAGCACA TTTGTCATGT GATTCAATTA ATTGCTGATT
GTTTGTTAAC GGCAGTAATG TCAATGATTT TCCACCAAGT GACGTGGCAA ATTTGTCGGA AGAAAACCTT AAGGTAGCTA
TTATGTAACT CTTTCCAAGT TCATGATGTT AGCCCTAAAG CAATTTGAAG CTTTCTTTTC CCACACGTGT ATGCATAATT
AACGTAAAGA TTATTCCATT GTCTCTGACA GGGGAAACCA GTACTTCTAA AGTATGTCAA ATTCCAAAAT GTTCGTAGGT
ATGCTATTTT CCTGGATTCC TTCCTTTTGA GACGTGCCTC TTGTTAAATA TAATCTATTT GATGGAAATT GTTCGCTAAT
TTATATTAAT TACTTGATCA GCTTGACAAT TTTTATTGAG GACAACCAAA CAGGTTCAGA GATCACAAAA GTTCAGAAGA
TTGTGCTGCA TGGTTCAACG TAAGTTATAA ACCATCCATC TATCAAGTTC GATTACTCAT CCTTTCTCAT CTACAGCTTT
TAGTTTCTTC AGCTATTAGT GAAGAACTAT CAAATTCCTT ACTAATTGTT TTATTTGCTT CTTCCCCTAA TTTGGTTGTG
ATTTCTCTTA GTCATTTTTC ATCCAGCTGT TATATAGCAT CATCATTGTT AATTGGTTTC TAGCAGAAGC AACAATAAAA
ACTCTACTGG TTCCAGATAT TCATTTACTT TTAGTTGCAA GTTTTTATCT AACATTATTT TCTGTCATGC TGTGTTAGAA
GCATTTGTGA TTTTGGAATC GACACTTAAT TGACTTGAAT GTGGATTATA CCTTTTTTTC CTAGGGGAAA GTAAAAACGG
GGGGTGGAAT GGAAAAACTA CATATTTAAA CCGGCTCATT TATGCTAATT TTCTAGTTTG CAACCTTATC TGCTTCGCAA
GGGCATGCAT TCTGGCTATT TAGAAATATT GATGCATTAT TTTCTGATAT TTTACTGTCA ATGCAGCGTT GAAACAACGG
ACATGAAGGG TTTGAAGAAG ATTGAGGATC ATTAATCATC GAGGAGATTC GAGTTTTCTC CCAATCCTCC ATTAGAAATT
TTGATTGGAA ATGTTGTGTT AGCTTCGTGA ATGATGATGG TTTATGACTT CTAATGTCTA ACTCATTTCA AATAAAACTG
ATGCAAACTA TATCCATATG ATTGTGACAA TTTGTGTTTG GAAGCAAACA TTTCAAGCTG CATGATTATT TGTTGTCTTT
GAAACATGTA AACTTCGTCG AGGTTAGAAT TTCCTTCAAC GACTGGATCT GGAAGGAGCT AAGCTGCGTG AAGGTGTCAT
CCTAATCAGT CATTTAAATC ATCACCCTTA TATGCACCTA ACAGGAACTT GCCTGTGTTT TCTGTTCACC CTTGTACACC
ATTATTCTCT ATATAGAATA ACGGAAGAGT TCTGAACAGT AGGTGGCTCG TACGGCCAAT TATCAATATT TGTGACTATA
TCCTCGCCTG TGATTCACTT TTGCAATATA AGTTTTCAAT CAGTATTTTT AATAAATTTT TTGTCGCCAA AGTTGTAGTC
ACTATTGGCA AAATCAGAAT AGCTTAGAAA CTGCACTAAG CTGGTTTAAG AGATGCCAGG TTATCTATTT CAATACAGTA
TATCGATTGT GTTGCTTGTA ACTATATTTT TTAACCTTCA TAATTCAATA TTTAAGTGTC GG

>Vigan.08G162900.01
TATTAATTTA TGATTACAAA CTAGGAAGTT CCTTATTCGA AGCTGGGTTT GTTTTAGGCC ATTGATATTT GATTCCTCTC
TCTTTCTCTC TCCCTCTCCC TCTCTTTCTC TTTCTTTCTC TCGCAAAAAC CGTATCGACA ATGTCTGGGG AATCAGCCAG
CGCTATTCCA AAGGGTCAAG TTGATCTCTT AGATTTCATA GACTGGTCTG GGGTTGAATG TCTCAATCAA AGCTCCACCC
ACTCTCTCTC CAATGCTATC AAACAGGGTT ATAGAGAAGA TGAGGGTTTG CATCTGGAGA GTGATGCAGA TGAACAGCTT
TTGCTCTATA TTCCTTTCAC ACAAGTTATT AAACTCTACT CCATTGTTAT CAAAGGTCCT GAAGATGAAG GCCCCAAGAC
GGTGAAGTTA TTTTCTAACA AGGAGCATAT GGGATTTAGT AATGTCAATG ATTTTCCACC AAGTGACGTG GCAAATTTGT
CGGAAGAAAA CCTTAAGGGG AAACCAGTAC TTCTAAAGTA TGTCAAATTC CAAAATGTTC GTAGCTTGAC AATTTTTATT
GAGGACAACC AAACAGGTTC AGAGATCACA AAAGTTCAGA AGATTGTGCT GCATGGTTCA ACCGTTGAAA CAACGGACAT
GAAGGGTTTG AAGAAGATTG AGGATCATTA ATCATCGAGG AGATTCGAGT TTTCTCCCAA TCCTCCATTA GAAATTTTGA
TTGGAAATGT TGTGTTAGCT TCGTGAATGA TGATGGTTTA TGACTTCTAA TGTCTAACTC ATTTCAAATA AAACTGATGC
AAACTATATC CATATGATTG TGACAATTTG TGTTTGGAAG CAAACATTTC AAGCTGCATG ATTATTTGTT GTCTTTGAAA
CATGTAAACT TCGTCGAGGT TAGAATTTCC TTCAACGACT GGATCTGGAA GGAGCTAAGC TGCGTGAAGG TGTCATCCTA
ATCAGTCATT TAAATCATCA CCCTTATATG CACCTAACAG GAACTTGCCT GTGTTTTCTG TTCACCCTTG TACACCATTA
TTCTCTATAT AGAATAACGG AAGAGTTCTG AACAGTAGGT GGCTCGTACG GCCAATTATC AATATTTGTG ACTATATCCT
CGCCTGTGAT TCACTTTTGC AATATAAGTT TTCAATCAGT ATTTTTAATA AATTTTTTGT CGCCAAAGTT GTAGTCACTA
TTGGCAAAAT CAGAATAGCT TAGAAACTGC ACTAAGCTGG TTTAAGAGAT GCCAGGTTAT CTATTTCAAT ACAGTATATC
GATTGTGTTG CTTGTAACTA TATTTTTTAA CCTTCATAAT TCAATATTTA AGTGTCGG

>Vigan.08G162900.01
ATGTCTGGGG AATCAGCCAG CGCTATTCCA AAGGGTCAAG TTGATCTCTT AGATTTCATA GACTGGTCTG GGGTTGAATG
TCTCAATCAA AGCTCCACCC ACTCTCTCTC CAATGCTATC AAACAGGGTT ATAGAGAAGA TGAGGGTTTG CATCTGGAGA
GTGATGCAGA TGAACAGCTT TTGCTCTATA TTCCTTTCAC ACAAGTTATT AAACTCTACT CCATTGTTAT CAAAGGTCCT
GAAGATGAAG GCCCCAAGAC GGTGAAGTTA TTTTCTAACA AGGAGCATAT GGGATTTAGT AATGTCAATG ATTTTCCACC
AAGTGACGTG GCAAATTTGT CGGAAGAAAA CCTTAAGGGG AAACCAGTAC TTCTAAAGTA TGTCAAATTC CAAAATGTTC
GTAGCTTGAC AATTTTTATT GAGGACAACC AAACAGGTTC AGAGATCACA AAAGTTCAGA AGATTGTGCT GCATGGTTCA
ACCGTTGAAA CAACGGACAT GAAGGGTTTG AAGAAGATTG AGGATCATTA A

>Vigan.08G162900.01
MSGESASAIP KGQVDLLDFI DWSGVECLNQ SSTHSLSNAI KQGYREDEGL HLESDADEQL LLYIPFTQVI KLYSIVIKGP
EDEGPKTVKL FSNKEHMGFS NVNDFPPSDV ANLSEENLKG KPVLLKYVKF QNVRSLTIFI EDNQTGSEIT KVQKIVLHGS
TVETTDMKGL KKIEDH*