GBrowse Details

Vigan.08G150800.01

Basic Information:
Name: Vigan.08G150800.01
Multiple alignment
Variant Information
Position: Chr08:13386030..13389423 (+ strand)
Length: 3394
Functional Information:
Description: Similar to coiled-coil domain-containing protein 12-like isoform X2. [XP_004495491.1, Cicer arietinum]
InterPro: mRNA splicing factor, Cwf18 (IPR013169)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:38.46,38.26,20.31,27.88,28.19,22.19,18.85,18.94
Arabidopsis thaliana homolog: AT3G05070.1
Automatic updates:
Name: NM_001251122 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cwf18 domain-containing protein (LOC100306131), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:13386030..13386240 (+ strand)
Length: 211
Type: five_prime_UTR
Position: Chr08:13386241..13386386 (+ strand)
Length: 146
Type: CDS
Position: Chr08:13386466..13386589 (+ strand)
Length: 124
Type: CDS
Position: Chr08:13386684..13386798 (+ strand)
Length: 115
Type: CDS
Position: Chr08:13389005..13389066 (+ strand)
Length: 62
Type: CDS
Position: Chr08:13389067..13389423 (+ strand)
Length: 357
Type: three_prime_UTR

>Vigan.08G150800.01 class=Sequence position=Chr08:13386030..13389423 (+ strand)
ACCGGTATAA AACGAAGACA AAGACAGATG AATTGAACAG TAGGCACTGG GTGGGATATT GGCCATTGCA TTTGGAAGAA
GTGATTTTGT GAGTGTGTAG AAAGATTAGG GTTTTGTGTG CGTTTGTATA GAGTAGAAGA AGAAGAATTA GGGTTTGTGT
ATACGTAGAT ACAGAGAGAT AGTGTAGAAG AAAGTTTGAT TGAGGGAAAA AATGGGTAGT GAAGAGGATT CGATCGAGCA
AAGCGTTGCG TCCCGTCGCG AGAGACTGCT TGCTCTCAGA GCGGCTCAAG AGTTGTCCAG TGCTCCCGAA CCAAAGGACA
ACGACGATGC TGAAGAAGAA GAAGATCAAC AACAAGAGTG GGTATCTGTC TACCTTCGAT GCCTTCTCTT TCTCTGATAC
TCAAAAAAAC TCACTGTTCT TGAAATTGTG TTGCAGAATG AAGTTTCGTA ACTACGTTCC TCATGACAAG AACCTTCAGG
AAGGGAAGCT TGCCCCTGCT GTGCTCCCCA AGTTCGAAGA CCCTGTCGAT GTGCCTCCAC TCGAACCTCA GGCTCAGGAG
GTACTACTCT AGTGCGTACT CCATTGATTA ATCCATCATT CTTTTTCTCT GTCTCTTTGT TTTGTAATAT GTATTTTTTA
TACAAAAAAA TTAGGATCCG TTTCTGAATA TTGCTCCGAA GAAACCTAAC TGGGACCTGC GGAGAGATGT GCAGAAGAAG
TTTGATAAGC TGGAGAAGCG AACTCAGAAG GCTCTCTATC AGCTCATGGG TACGTTTACC CATGTCCTTA TTTCTTAACT
GTGTTGCTCG GTGATAGGTA TCTGCCATAT GGTGGTGAAT TGTTATGGGT AGTTTCCCTT AGTTTTGTTA ATTTTTTATG
ACACCTTGTT TCATGACATG AATCTTTATG CCATCTGAAA ATACTGTCCG ACGGTTTTCC TTGCGAACTA TTGATTAATG
CTGGGAAGCT ATGCTATCTG TTCCTCGAGT TTGCTTTTGG TTTCCTTGTT TCTTTTATTT GTGTCGTCAG CTTTGCCCAA
AATGCTAAAT TCCTGTTGAC AGATTAACCA AATTGTTTGC GATGATATTT GAGTCATAGT GTTGTAAAAC AAATGGTAAC
GTTTAATTTT GTTTTCTTTG CCTCAATTTG TTTTATTTTA TTCGAAGGCA CTGCTTCATT TAGGAAAGCA TTTTTAGTTC
ACTGCTAGCT ACTTCTTACT TGGCTCCGGT GGGTTGATAT TTGGAAAAAT GGTAGATCAG TTGGTGAGCA GTATGATAAG
AGATTATTTC GGTCTCCTAA ACTTGCTAAA GATTATGGAA GGGAATGACA GAAGGAAGAA CAGAAATATA ATTGATGTTT
TTCTCTTCTT TTCCAAATAG GAAGACCGAA AGGTTTGTCG AGCAAGTTCT TGCCGCTGTG ATGCCACTTG TGTGTCATGT
AGGCAATTTA TGCTAGTCAA TCAAATAGAG TTAGTGTTTA GGACAAGGTG ACATTTTTGC TAGGTACAAG TTTTTACTAA
AACAAACAGA AGTTTTGGAA GTAGGACCGA ATACTAAATA TTTGTTGAGG CTAACTTAAA AGACTGAAAT GGAAGTCCGT
TCTGTCTCGA TTAATTATAT TTGGGTCTGA GGTTATCAAA TCACAATTCA AATTGTTGGT AAATCAATCA CCATTTAATT
TTTGAATTGT GGTTGTTTCT CTAAAGTAGC ACTGTGTTAA AAACAATTTA CCAAAAAATA TTAAAACCAC ATAATACATG
GTCAAAAAGG TTGATGGTAC AACATGGAAG GTGGCATTCC ATGTACCAAA GCAAGGAGCC AAGAAGAATA GCACCTTCAA
TGAGAATGCA ACAATGACAC ATGCATGTAT TTGTTCAATG GTACACAATA TTATTAATCC AATCTTATAT AATAAAATTG
TCTTCTCTCT TGAGAATGAG GTACGCACCC AAATTAACCA GCAGAAAAAT GAGTGACAAC TCGATCAGGT GCAAACTACA
ACGATAATAT TGTATTTTGT GTTACCTGAC CTTTTCATTT CCTTTCCCAA ACCAGGGTCG AAACTCTTCT AGTGTGTTCC
ATTTTGTTAC TGTGCTTCGG CCAGCCCATT GACCCCAACC TGCTAGTAAT CCCTATTGCC TATTGATTTT TACTAATTTC
CCCGTAGTAT ATTTTTTCAA TTTTAAAATA AAAAATGTAT AGCTGACTCA ATTAGGTGAT TTCCAAACCT AAATGGATTA
GGTTGGATCA GTTCTGTTTG GATTTATTTT CCCCCAAACC TAATCGGAAA GGATGGCAAA CAACCAACTA GGATACGTTG
AGTGACTGCT TGAATTTCTT AGCTTCAGAA AATTGATAAC AAAGCTAGGT GTAACCAAAT AATGGGGCCT TAGTAGTGCT
CCTTCAATCT CTTCTTACAA TTTAAAGTTG AATTTTTACT TTCTAGAAAA AATCATGAGT CGTGCAATTC ATATCAATGA
TATAGAATCA CATCAACTCA TGCACATTTG CATGATTGAA AATCGTTTGT GACTCATCAA ATGATATGTA ATTATTAATT
ATTAGCTTGC AAATCATGCA ATTCGAAACA CAAACGGTAA GAATCTAATA ACTTTGGCCT AAACAATAAA ATTAATACTA
ACAGATGTCT TATTCCTCTA GGTGAAGTTA GGTTGGATAC ATAGATGACA TGAGACACGG TCACAGGATG CCATCTAGGT
ACTATGTGAA TCTAGTATAT GCGAGTAGTA AATTTAGTAT TATCAATTGC AAATTTTATA GGGTCTTTCG TTTCCGCTGG
CCATAAATAT GCAAATAATT TATCTATATT CTATTTAGTT GGATAAGAGA ACTGCTCTTT GTTTTTCTAT TGTTTGTGTT
AGTTTCATTG TAAACACTAC TTCATCTGAA TTACTTGTGT AGTCTTTGTG CCTTCTAATG AAATTTGGAG TCACTATAAT
GCTTTTTTTG GACAGTGGAA CAAGAGAAGC AAAAACAATT GACTGAAGGA GATGATACAA ATGGCACAGC AGAGTAGATT
GCAATTTGTT ACGGAAACTG AAAGATATGG AAGCAATATT TTGAGAACTC CTGTTCCATT TAAGCGTGTT ATTAACGCAT
AAAGAATAGG AATCTGACAC AGATTTAGCA TTGTATCGTG AATTTCGTAT CATTCACTTC TCTTTCCATG AACAAGTTTG
AGTATATTAG ATATGTTTGT AGAGGTGAAT ATCCCTGGGA TTCTGATAGT TGTATCAATT AGTTTATACA TAACACTACT
CAAATATGGG AAGATTTAAT TTATTTTCCT CTTTTATGTT CCCTGGCCGG GGATTGTTTT AAATATTCGT ACCTCAATGT
TCAGCATTGA TGATATTTTT TTTTAAAATA TTCT

>Vigan.08G150800.01
ACCGGTATAA AACGAAGACA AAGACAGATG AATTGAACAG TAGGCACTGG GTGGGATATT GGCCATTGCA TTTGGAAGAA
GTGATTTTGT GAGTGTGTAG AAAGATTAGG GTTTTGTGTG CGTTTGTATA GAGTAGAAGA AGAAGAATTA GGGTTTGTGT
ATACGTAGAT ACAGAGAGAT AGTGTAGAAG AAAGTTTGAT TGAGGGAAAA AATGGGTAGT GAAGAGGATT CGATCGAGCA
AAGCGTTGCG TCCCGTCGCG AGAGACTGCT TGCTCTCAGA GCGGCTCAAG AGTTGTCCAG TGCTCCCGAA CCAAAGGACA
ACGACGATGC TGAAGAAGAA GAAGATCAAC AACAAGAAAT GAAGTTTCGT AACTACGTTC CTCATGACAA GAACCTTCAG
GAAGGGAAGC TTGCCCCTGC TGTGCTCCCC AAGTTCGAAG ACCCTGTCGA TGTGCCTCCA CTCGAACCTC AGGCTCAGGA
GGATCCGTTT CTGAATATTG CTCCGAAGAA ACCTAACTGG GACCTGCGGA GAGATGTGCA GAAGAAGTTT GATAAGCTGG
AGAAGCGAAC TCAGAAGGCT CTCTATCAGC TCATGGTGGA ACAAGAGAAG CAAAAACAAT TGACTGAAGG AGATGATACA
AATGGCACAG CAGAGTAGAT TGCAATTTGT TACGGAAACT GAAAGATATG GAAGCAATAT TTTGAGAACT CCTGTTCCAT
TTAAGCGTGT TATTAACGCA TAAAGAATAG GAATCTGACA CAGATTTAGC ATTGTATCGT GAATTTCGTA TCATTCACTT
CTCTTTCCAT GAACAAGTTT GAGTATATTA GATATGTTTG TAGAGGTGAA TATCCCTGGG ATTCTGATAG TTGTATCAAT
TAGTTTATAC ATAACACTAC TCAAATATGG GAAGATTTAA TTTATTTTCC TCTTTTATGT TCCCTGGCCG GGGATTGTTT
TAAATATTCG TACCTCAATG TTCAGCATTG ATGATATTTT TTTTTAAAAT ATTCT

>Vigan.08G150800.01
ATGGGTAGTG AAGAGGATTC GATCGAGCAA AGCGTTGCGT CCCGTCGCGA GAGACTGCTT GCTCTCAGAG CGGCTCAAGA
GTTGTCCAGT GCTCCCGAAC CAAAGGACAA CGACGATGCT GAAGAAGAAG AAGATCAACA ACAAGAAATG AAGTTTCGTA
ACTACGTTCC TCATGACAAG AACCTTCAGG AAGGGAAGCT TGCCCCTGCT GTGCTCCCCA AGTTCGAAGA CCCTGTCGAT
GTGCCTCCAC TCGAACCTCA GGCTCAGGAG GATCCGTTTC TGAATATTGC TCCGAAGAAA CCTAACTGGG ACCTGCGGAG
AGATGTGCAG AAGAAGTTTG ATAAGCTGGA GAAGCGAACT CAGAAGGCTC TCTATCAGCT CATGGTGGAA CAAGAGAAGC
AAAAACAATT GACTGAAGGA GATGATACAA ATGGCACAGC AGAGTAG

>Vigan.08G150800.01
MGSEEDSIEQ SVASRRERLL ALRAAQELSS APEPKDNDDA EEEEDQQQEM KFRNYVPHDK NLQEGKLAPA VLPKFEDPVD
VPPLEPQAQE DPFLNIAPKK PNWDLRRDVQ KKFDKLEKRT QKALYQLMVE QEKQKQLTEG DDTNGTAE*