GBrowse Details

Vigan.08G129200.01

Basic Information:
Name: Vigan.08G129200.01
Multiple alignment
Variant Information
Position: Chr08:11343059..11350934 (+ strand)
Length: 7876
Functional Information:
Description: Similar to polyadenylate-binding protein 2-like isoform X1. [XP_004495249.1, Cicer arietinum]
GO: Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
InterPro: RNA recognition motif domain (IPR000504)
Nucleotide-binding, alpha-beta plait (IPR012677)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:153.73,91.72,42.98,41.62,52.83,33.26 ,53.31,37.59
Automatic updates:
Name: NM_001248545 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527139 (LOC100527139), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001248545 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RNA recognition motif-containing protein (LOC100527139), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:11343059..11343133 (+ strand)
Length: 75
Type: five_prime_UTR
Position: Chr08:11343134..11343247 (+ strand)
Length: 114
Type: CDS
Position: Chr08:11343339..11343441 (+ strand)
Length: 103
Type: CDS
Position: Chr08:11343543..11343613 (+ strand)
Length: 71
Type: CDS
Position: Chr08:11349134..11349325 (+ strand)
Length: 192
Type: CDS
Position: Chr08:11349415..11349533 (+ strand)
Length: 119
Type: CDS
Position: Chr08:11350434..11350479 (+ strand)
Length: 46
Type: CDS
Position: Chr08:11350480..11350934 (+ strand)
Length: 455
Type: three_prime_UTR

>Vigan.08G129200.01 class=Sequence position=Chr08:11343059..11350934 (+ strand)
AAGATGAGAG TTAGGGTGTA GGAGAAAGGA AAATAAAAAT CAGTTGGCGT GACAGCGAGC AGAACAGAAG AGGGAATGGA
GCAGGAAGAG CATGAAGTAT ACGGTGCAGA CATTCCCGAC GAGGAGGTTG ACATGGACGC CGACGCCGAC CAACAAGACG
ACCAACTTCC CTCCAATCAC ACAACCAAGG TCAGTTAGGG TTCGCAGTTA GGTTACGCTG TTTTTCTTTT TTCTCTCTTT
CTCCGAAAAG TTGCATCAAG TATTTTCGTC AAATTCTCAG GAATTGGAGG ATATGAGGAA GAGGCTGAAG GAGATCGAGG
AAGAAGCTAG CGCGCTTCGC GAAATGCAGG CCAAGGTTGA AAAAGAGATG GGAGCTGTTC AAGGTAGGTT TCTTTGTTTT
ATTCTTTCAG ATCTCTCTGA TTTTTAGCGC TATTTTTGTG TCTTGACTTC AATTTTTGTA TTTTTTGTGG TATTTCGTTT
AAAGATTCGT CTGGTCCATC TGCAACTCAA GCTGAAAAGG AAGAAGTGGA TGCTCGGTCA ATCTATGTTG GTAATGTGAG
GGTTTATCTT TTTTGTTCTT CCGCTTTTTT CATTTATACG TTGCTTTTTA ATCACTTCGA ACACTGTATT TCTTGGTTGG
TTTGGCTGTT TGTTGGTCTG TGCTCTTCCA TGTTGATGCT CGCTAGTTGT TGGTCCTTTG TTCCAGTGCT TTGATAACTT
TAGGGTTTTT AAGGACTTTT TTTTTTTTCG TTGCTAACGA ATTCACCTCG TTGATCAAAT TCTTTGACAT TTGTCTTGTT
GGTGACGGAT TATGAAATTT GGATCTATGA GGTATGGTGA TGATAAATGT TGCTTAAGTT GTAGCAGCTT TCCTGCCGCA
TACTGATAAA AATTTGCGCA GCTTGTTGTC AAATGATGGC AAATTCATGG GGTTGTTTTA ACCCATCACA GAAGTCACGG
GAGACATATC AATGCATCTG GATCTTAAGG GAAACATATC AGCTATAGTC CTAAAAAATT TCTCAGGATC TCGGTTCTTA
ATCTAATTTT AGTCTGTAGT AAAGGAAAGA AAATAATAAG CGGAGACCAG TAACTGCACG TTGTGCTGTT TTTTCTTCTT
GAAATGCAGG TTATACATTC CTGGATATTA ATTGTCTCTT TTAGAAGGTG TGTAAATGGC GATCTAGATC CTTTGTATAA
AGGCTTAACA TAATCTTGTA ATTTCAGTAA ATAGTATAAT CTTTAAATTG CCTTGCTATC TTCAATGGTA CTTGATCTGC
AGTATATTGA GACAAGGATT CATCACCTGC CTCTCTTTTT CTCTCTTTGG ATAGTCCCTG CTAAAAGTGA ACCACTGTGA
TAATGGTTGT TAAACTTGAG TTTTGACTGG TAGTATTGCA CAAATTTACT AGCTCATTCC CCCAAATTGA GCTAACACAG
ATGTAAAATC ATTTTCAAGT AAGCTTGAGT AAAATCACGT GGATTGTATA GGTTTGCACT AGCTGCAAAT TGGAGGACCA
GTTGTGTGAG TCCATCAAGG TTCTCTTTTC AGACCAAATG ACCATCTTAA CTATTTTGAG GAATGAATGA AACTGAACGT
GAATGTTTAA AGGCACGGTT CTCTGCTTCA TTGCTGTTAA ATAGCTGTTA TATTGCTATT GTGTTGCAGA ATTTCTCAGA
TTAATGACTG TAATTCAGTC TGCTGTTGTT TCTGTGATAG ATGTCTTGGT TGCAGCATGC ACCTTATATG CTTTTTCCGT
CTGTGGGGCG AATTCTTGGC CTACTGAACT TTTTAGTTAA TATTAGGCCA TTTTTTGTGC ATTTTATTTT TATCTGAATT
TTGATCCCAG ATTTAAAATA CTAGTCAAAT TCACTTTCCT CTAAATTTTC AATGAGTACT TAGTCAATTG ACATTGCATC
TTACTTATTC CCGGCTTGAA GACATGCTAG GGCATGTTGT TCACTTTTGG GTTGTGTGAA GCTCTTCACC CAAGTGCATT
ATGGTTCATC CATTGTAATT TCCAAGACTT TGTTAATTCC TGTTCCCAAA GCTTGATTCT GTGAATCTAT TCAGTGAGTC
CATTAATCCA CCTACATGCC TTTTTGTTCT CTGTTACCAA TGTGTGATAT TATGCTCTCG GCCTCTCTCT ACTGAGTTTT
CTCTATTCTT GGTTATGAAA AAACTGATAA ATTTGGTTTT CTGGTTGGAC AAAGCATAGT ATTTCGAACT TGTAATAGTA
TTTATAATTA TCCCATCTCT TTGCTCTATA GACATGCTGT TAAATCTTTA AATAAATATT TTTTTCAATC CTACTTCTTT
GTAGAAGTAT AATGTTTTGA GCGCAGGTGT TCAATGTTTA TCATTTAGAT TTTTTGGCTT TCATGCCAAT GACCAGCTGA
ATTAATGAAA TTGATTTCGT CCAAAATTCC ATTCATACCG GACTAATATT TTTAGTGATA TCAGGTTATA CTAACTAGCA
AAATAATTGG TATAATTAAG TTATTATTGG CTTTATATAT TAAAAATTTT GATGAAAACG AATTAGATTG AAACACTGGG
AGTTTGAGTT ATTTACAGAA AGGAAAAATG TAATGTAACT TTTAGAAAGT GGACTTTAAG CTTAATTTGT CTTTAACAAA
ATCGACTTGT TAGATTAAGT TTGCTCTCAC TTATTTACTC TAATTTGATC ATATATTTGA TTAATGTGGG GTCGTCAATA
CACACCTTCA TGTTGATGGC TGGATATCCC AAATGCAGAA CTAGGTATTT GTGGACAGTT TGATAGTGGT CTAACGGCAG
GTGATACTAA GATATGATAT GATAGTATAT TATAAAGTGA AGTTTAAATC TAATTCAACC TCATAAAATC ACAAAATCGG
ATTTGTATGA GGCTTGCATC CTCTTATATA TTATAGTTTG AATATATATA TATATATATA TATATATATA TATATATATA
TATCTATCTA TCTATCTATC TGATGGATGT GAAATCTCTA ATACTAACAA AAAAGAAACA AACAGGAAAA GGTGTAGAAG
ACATGGTTAA CTTAATAATA ACCATACCAG AGTACTTATA GTGTGATATA ATGTAGAGTC ATGAGGCACA GCCTTTTCAT
GAATGGAGTG CATCACGTTT TTGTTGAGCA GCAATAGCTG CATGAATATG GGCAAATCCT GACCATGCAG CCACTATGGT
TAACAGACCG TTAGTCCTTT TTTTGCAACC AACATTACAT TGGTTTGAGT GGAACTGGAC CTGAATTTTG TAAGTGATGT
TTTGGGTTCG AGTCCTCCAA TGAAATAAAC ATGGTTCGAA GAGTTATTCC ATTAAAGCTG GCTAACTAGA TTTTTTGGCA
GAGATTAATT ATTTGTTAAA CTGGTTAATA TTTTTTCATA TAATGTGGAA ACAACTAAAA TATCCATGTT TTCTCATCAT
TTTGTTTGAT CATACTTAAT ATTTCTTTGG AACTTTTTGA AATTTCATAC TGTTTTCTTC ATCAGAGTGA AAAATGGGTT
CAAAACCCTT CAGTCCTTAA AAAATGGTTC AATATGCGAC TGCTCTGTTC CGTGAACTAC TTCTCTTTCG CTGATGACTC
ATTTTCCAGC AAAGCTTTTG CTTTTTACTT TTGGAAGACC CTTGACTGTA TGAAGTTTGT TCCTTCTAGC AGACTATATT
CATAGTCCAT AAATGTTTGT TTTGCCATCA TTTGGTTGAT TGTACTTCAG GTTTCTTTAG AATTGTTTTG AAATTTCATA
ATTTTTTCTG CATCATGTAG AAAAATGATT TCAAAACCCT TTAGTATTCA AGGAATTATG CAGTAGGTCA TCAATAATCT
CTGATAAATG ACTCATTTTC CAGACTTTGT GTTTCTGAGA CCCTTAACTT TGTCAATTCC ACTTCTTCTC CTAGTATCTC
TATCCATAGT TTATACATGC ATGTGCTTCC CCCTACTATT TTCTCTAATA TCTCTTCCAT GATTCACATC AAACTTCAAA
CTATAAAGAT AATGAGAAGC ATTGAACTGA AACCTTGTGC TTCTGTGACA TGAGTGGCTT ATTTATATTG ACAAAAAGAA
ATCAATACAA TAAATATTAG GATATTTGAT TTCCTCTAAT AGTAAATATA CGATCCTAAA ATATTATACA TTTTATCTCG
ATATTTCTTA TTATAAAGAT ATTATCCTTA TTTCTATAGT TATAACACTT TTCCCCAAGC TAGGACATAT AAGTCGTCCT
CAGCTTGCCT CAACTGTGAT TGATCCTTGG TCCTTTTAGA GATTTAGTGA ATGTCTGCCA ACTACATACT AGAATTGACA
ATTCTAGTAG TGATATCTTC AAACATCATG GGTATCTCTA CATCACTCAT TAGGGCCATG CAAACCGGCC AATCAGGTCA
CCCATCTAGT GCCTACCGAT GCGTATACAT GTATATAGCA ATATATCTAG GATCCACCAC CCACGAAGAT TCACCCAAGA
AGGACATATG TCATGCATCT CAACTTTAAT CATATATCTA TCCAGAGAAT ATATAATTAA TCTCACCTTT TATACATCAT
ATCATCAATA AAACATGTAT AGAAGCATAC ACCAAATATG CAAACATCAA GCCTGACATA ACGTCACACT TGAGCAACCT
TAGCAACATA CACAAAGCAT TAACCATTTT GATTGAGCAA AGGTCTAACC AATTGAGCGA AGTGCAATTT GAGAGCAGCA
CCCTCCCAAA GCTATCCTTG CTCCAATGGT CGTCTTATCA CTTAAGTGTC CATAGCTTGA GTGTTGCAGC TAATGCTTGA
ATGACATTCA TATGTTGAAA CATCATCCAA CCATTTCCAG AAGGCCATTC ACTGTCTTGT AATGTTTGAG TGGCCAACCA
ATGCTTGAGG ACCAAGGCTA TGTGTCATGT AGTACTTTAT TCTATGACAT GTGTACTTTG CCTCATGCCA CACGTAAGCA
TTGAAAAACA ATGCTTGAGC CACATGCCAC ATCGCACAAG TGTCTAGCAT AATGCTTGAG CGATGATCTT TCAGAGAAGA
GAAAGTTGTC TTCTACAAGC CCTCACTTTA GCTATATACC ATGATGCTTG AATGACCAAC CCATCACTTG AGGAACTTAA
GGCTGTTAGT CCAATTAATG TACAATGCTT GGCCTCGCCC AAGTGAGAAC ATGTTGCTGT AGTGATACTT TGCCTGAGAG
CAACCCAGAC CCAAATTTCA CGTGAATTCC TTAATGCAGA GGGAATGTAG TGTGAGGAGT TTTAGAAGAC TTAGATGTCA
GAATGGACTA AGAAATAACT GTCTAACTTT TATTTATGGA TGTCACGTCT AATTCATTAT AAAATCTAAC ATTAAAATAT
TACTGGGTTT TACAATATAT TCCTTTTCAT ACAACAATAG TATTGTCAAT GTCAGAAGTG GGTGAACCAC AAGTATAATG
CATGTGAGTA GTATAAATTT AATATGTATA ATATTATCTT CAGTTTAACA GCCATATCTA CCTTGTTACA GTGTTGTTGA
AGTCAGCCAC TATTCATAAT TTACAACTCT ATGCTTATGT CCCTCGTAGC TGAAATGTGA TGACCCTAGA CATCTCTGAA
AAATTAGACC CTTTCCTAGA AAGTTTTAAG GCTGCAAGAT TTGGTGAAAC CTATATTGTG TAGATTTACT GAAATACTTA
AGTAAATTAA AAAAAAAACA AATTTATGCA TCTTCTTAAG GCTGCAAGAC TTAGATGTCA GAACGGACTA AGAAATAACT
GGACCAACCT CATACGGACT TATTATTGAT TTATGGAAAT CTTATGAATT ATAACGGGAC CTATTATTGA TTATTCAGAC
CAACCTCATA CGGACTTCAT GTTGATGCTA ATCTTAAAAC TTAATCCATT TTCTACTTTT CACAAAATGA CATTAATGTA
TTTGGTAACC TGAATGTGAT AGGACTAGTG CTTCTTATGG TCACTTGTCT ACCGCATGTT TAACTTTTCT GTTGGATGCT
TTTAATTTAA TTATAATCTT ATATAGCTTT AATAGTGTTT TATTTTTTTT GTCTGGTTTC AAAATTATGT TTCAGGTTGA
CTATGCATGT ACGCCTGAAG AAGTCCAGCA GCATTTTCAG TCCTGTGGAA CTGTGAACAG GGTTACCATA CTGACAGACA
AATTTGGTCA ACCAAAAGGG TTTGCTTATG TAGAATTTGT GGAGATTGAT GCAGTTCAGA ATGCTCTCCT GTTAAATGAA
TCAGAATTGC ATGGTCGACA ACTAAAGGTC TTCTTCACCA TCAATTAATC TTTGTAAATT CAAATTAATC ATTCCTTGTT
TCTTTGGCTA TACTTGAAAT CTGTTTTTCC CTTCAGGTCT CAGCCAAGCG TACAAACGTT CCTGGAATGA AGCAGTATTA
TGGAAGAAGG CCTACTGGTT TCCGATCTAG GAGGCCTTTC ATGCCTGCTC CATTCTTTCC ACCGTATAGT TATGGGTAAG
CAATTATTAG AAACTGGATA AAATGAATAA TTTATCTTTG ATCCATTTTC TCTTTCCCGT CTATGTTTTG TGAATTTTGA
TGACTTAGTA AAAAGTTTTT TCATTTAAAT GGTGCCTTAT TTCTGTTGTT TCAAAGTAAC GAATATATTT GCTTGTAGGT
GTTAGGCTAT AGGAACCTCA TGTTCAATAT GCAATCCTAA CAGCAAAGCA AATGCTTCGT TTATCTATTT GTTTTTTATT
CTTATGGGCA CATACGTACG TACACAGAAA CATATAAGAA AGTAATACAA TTTTTTTAGA CTTTTTTTAA TTCTATTAGT
CTTTTTTTTA GACTTTTTTT AGACTTTTTT TTAGACTTTT TTAACGGGCC CTACACACAT GTTGGGGCAA ATTATAATTG
TTGTGATTCT TTCTCAACAT TAACTTGACG TATTTCTTAC ACGAAAGGAT GTAAATCCAA TTTAAAACTA CATAGATTTA
AGTTCCATAT TAGTGAGCTT TACTACTCAG TACTAGAGTT TGAATACTGC CGACAGAACT TTGGCCAGGA TAATGCCATC
AGATGCTAAG TGGGGACTAG CTCTGCACCC AAAAGACGTA GCAATACCAT GTGAGAGAAC ACCGCACTCC CAACCCACTG
AAAAAAAAAC GAAGAAAACC ATAGATGCAC GCAACACGTT ATTGAGTCAA ATCTGTTCTC ACAATTAGAG GAGAATAAAT
CATATCATCA AGTGAGAATA GATATCACTT GATTTGAACT CGATAATGTG AAAAGGTTTA ATTTAATGAC AATGTATGTT
TTGATTTCTC TGATTTGTAA CTCTTTCTGA TTTTTGGATA GAATGCTATT CTTTGTTCCC CGGACCTTGT ATAATTTATT
ATTTTTTTCC TGCAGAAGGG TTCCAAGGTA TAGAAGACCC ACACGATACA GGCCATACTA GTGCACATTC ACAGTTTGAT
AGGTGATCAC ATTTATTTAT GAGAGCAGGC GTTGTTAATT TGCCATTGTA ATAATTTTCG TTGGTGAAGC AAGAACATAA
AGCTTCCTTT TCACAGAAGT TTGATGCCCT CGCCAGTTAA CGCTGTAGAA TGTATGATGC GGATAGTTTG ATCACTTTAT
TACCCCTGTT GAATGTTAAA GCTGTAGAAT TTGGCACTCA AGGGATGAAG GCAAATTTCT GTAGTTTATT AGATTGAACA
TCAAAATTAG ATTTAGTGAT GTTGGATTTT TGGAAGACTT GATGTTAACT GTGTTGGAAT TGGTTATAGC TAGCTTTAAG
TATGTGTGCT GTTGCGTGAA ATATCCTTAT CATGAAATTG AGTTATTAGA AAACGATATT GTTTATGAAC TTTCATACGT
TGTGCCCTTC TAATGCGTTT GGTTATTGTC GTGATG

>Vigan.08G129200.01
AAGATGAGAG TTAGGGTGTA GGAGAAAGGA AAATAAAAAT CAGTTGGCGT GACAGCGAGC AGAACAGAAG AGGGAATGGA
GCAGGAAGAG CATGAAGTAT ACGGTGCAGA CATTCCCGAC GAGGAGGTTG ACATGGACGC CGACGCCGAC CAACAAGACG
ACCAACTTCC CTCCAATCAC ACAACCAAGG AATTGGAGGA TATGAGGAAG AGGCTGAAGG AGATCGAGGA AGAAGCTAGC
GCGCTTCGCG AAATGCAGGC CAAGGTTGAA AAAGAGATGG GAGCTGTTCA AGATTCGTCT GGTCCATCTG CAACTCAAGC
TGAAAAGGAA GAAGTGGATG CTCGGTCAAT CTATGTTGGT AATGTTGACT ATGCATGTAC GCCTGAAGAA GTCCAGCAGC
ATTTTCAGTC CTGTGGAACT GTGAACAGGG TTACCATACT GACAGACAAA TTTGGTCAAC CAAAAGGGTT TGCTTATGTA
GAATTTGTGG AGATTGATGC AGTTCAGAAT GCTCTCCTGT TAAATGAATC AGAATTGCAT GGTCGACAAC TAAAGGTCTC
AGCCAAGCGT ACAAACGTTC CTGGAATGAA GCAGTATTAT GGAAGAAGGC CTACTGGTTT CCGATCTAGG AGGCCTTTCA
TGCCTGCTCC ATTCTTTCCA CCGTATAGTT ATGGAAGGGT TCCAAGGTAT AGAAGACCCA CACGATACAG GCCATACTAG
TGCACATTCA CAGTTTGATA GGTGATCACA TTTATTTATG AGAGCAGGCG TTGTTAATTT GCCATTGTAA TAATTTTCGT
TGGTGAAGCA AGAACATAAA GCTTCCTTTT CACAGAAGTT TGATGCCCTC GCCAGTTAAC GCTGTAGAAT GTATGATGCG
GATAGTTTGA TCACTTTATT ACCCCTGTTG AATGTTAAAG CTGTAGAATT TGGCACTCAA GGGATGAAGG CAAATTTCTG
TAGTTTATTA GATTGAACAT CAAAATTAGA TTTAGTGATG TTGGATTTTT GGAAGACTTG ATGTTAACTG TGTTGGAATT
GGTTATAGCT AGCTTTAAGT ATGTGTGCTG TTGCGTGAAA TATCCTTATC ATGAAATTGA GTTATTAGAA AACGATATTG
TTTATGAACT TTCATACGTT GTGCCCTTCT AATGCGTTTG GTTATTGTCG TGATG

>Vigan.08G129200.01
ATGGAGCAGG AAGAGCATGA AGTATACGGT GCAGACATTC CCGACGAGGA GGTTGACATG GACGCCGACG CCGACCAACA
AGACGACCAA CTTCCCTCCA ATCACACAAC CAAGGAATTG GAGGATATGA GGAAGAGGCT GAAGGAGATC GAGGAAGAAG
CTAGCGCGCT TCGCGAAATG CAGGCCAAGG TTGAAAAAGA GATGGGAGCT GTTCAAGATT CGTCTGGTCC ATCTGCAACT
CAAGCTGAAA AGGAAGAAGT GGATGCTCGG TCAATCTATG TTGGTAATGT TGACTATGCA TGTACGCCTG AAGAAGTCCA
GCAGCATTTT CAGTCCTGTG GAACTGTGAA CAGGGTTACC ATACTGACAG ACAAATTTGG TCAACCAAAA GGGTTTGCTT
ATGTAGAATT TGTGGAGATT GATGCAGTTC AGAATGCTCT CCTGTTAAAT GAATCAGAAT TGCATGGTCG ACAACTAAAG
GTCTCAGCCA AGCGTACAAA CGTTCCTGGA ATGAAGCAGT ATTATGGAAG AAGGCCTACT GGTTTCCGAT CTAGGAGGCC
TTTCATGCCT GCTCCATTCT TTCCACCGTA TAGTTATGGA AGGGTTCCAA GGTATAGAAG ACCCACACGA TACAGGCCAT
ACTAG

>Vigan.08G129200.01
MEQEEHEVYG ADIPDEEVDM DADADQQDDQ LPSNHTTKEL EDMRKRLKEI EEEASALREM QAKVEKEMGA VQDSSGPSAT
QAEKEEVDAR SIYVGNVDYA CTPEEVQQHF QSCGTVNRVT ILTDKFGQPK GFAYVEFVEI DAVQNALLLN ESELHGRQLK
VSAKRTNVPG MKQYYGRRPT GFRSRRPFMP APFFPPYSYG RVPRYRRPTR YRPY*