GBrowse Details

Vigan.08G116400.01

Basic Information:
Name: Vigan.08G116400.01
Multiple alignment
Variant Information
Position: Chr08:10144341..10145938 (+ strand)
Length: 1598
Functional Information:
Description: Similar to Uncharacterized protein. [I1NHN2, Glycine max]
InterPro: Transcriptional activator, plants (IPR007033)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.06,0.40,5.12,3.57,0.32,0.53,1.48,5 .40
Arabidopsis thaliana homolog: AT3G52900.1
Automatic updates:
Name: NM_001254338 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100794044 (LOC100794044), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254338 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transcription factor SRG-like protein (LOC100794044), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:10144341..10144635 (+ strand)
Length: 295
Type: five_prime_UTR
Position: Chr08:10144636..10144878 (+ strand)
Length: 243
Type: CDS
Position: Chr08:10144980..10145090 (+ strand)
Length: 111
Type: CDS
Position: Chr08:10145344..10145424 (+ strand)
Length: 81
Type: CDS
Position: Chr08:10145711..10145794 (+ strand)
Length: 84
Type: CDS
Position: Chr08:10145795..10145938 (+ strand)
Length: 144
Type: three_prime_UTR

>Vigan.08G116400.01 class=Sequence position=Chr08:10144341..10145938 (+ strand)
CAATGCAAAA CCACATCATA ATCCATCATC ACTGAGGTGT TCATTGTGGA TGCAACATCA TATTACTTTC AGTTTTACTA
CAAAATCTCC AGGAGATCAA TTATATTTCT GGAATGCATC AAATACTTAA TAAAGAAAGG CAAAGAGTTT CTGGGAGTCT
CTTTACTGTA TTTAGAAGCC AAGAGAGAAG AAGTTGTTGA AATGTGAAGA AAGAGTATTG AAGTGAAAGC AACAGAGGCC
TCTTGTTGAA ATAAACCAAC ACCAAAATCA TTGGACCAAG TTTGTGGGGA AGCACATGGG CTTAGTTTGC AGCAGCAGAG
AGGAAATGCA GAAAATGAAG AACCTTGGCA GCATTGGAAG CAGTGGGAGG CTATCAGCAG AAGAGTATGA GGATGAGGAT
ATTTCAAAGC TCGCCATCTC CACGTTTCAG TCTAAGGAAG AAGAAATTGA GAGGAAAAAA ATGGAGGTGA GAGAGAAAGT
TGAACTCCAA CTTGGTCGTG CTGAAGAAGA GACTAGGCGC TTGGCACACA TTTGGGAAGT AAGTTTCATG ACATGATGTT
GACAGTAGTT TCAGTTCTTT AAGCTAAATC CAAATTATGC TAATATGTCA CGAGTTGTTA TTGTCACACT CTCTACTAGG
AGCTTGAAGT GCTTGATGAT CCCATGAGGA AGGAAGTTGC AATGTTACGC AAGAAGATTG ACTTGGCTAA CAGAGATTTG
AAGCCACTGG GACTTAACTA CCAGAAAAAG GTACTCATTA GTTGAAGGCT GAGTTTATAC ATGAACTTTT TATTCCTTCC
TAAACACATT GAAATTTTGT TTACATTATT ATCTAATCAC AAACTGACAA TAATAAATTT ATGGACTAGT TAAATCATAC
TCACTACAAT TTCTGATAAT TAAACTCGTA CTTTTGAAGT TTTAAAAATG GGATGGCTTT GTATTCTGGA ACTACTTTCT
TAATAATGTC GAGTGAAAAC TAATCTGTAG TGTTGTCTGA TAGGAGAAAG AGTGTAAAGA AGCCTTGGAA GCTTTCAACG
AAAAAAACAA AGAGAAGACT CATCTGGTTG CTACACTAGT TGAGGTATAT AGCATACAAT ATCTTTCAAT AAGTTTTTCC
AAACAGATTT TTAAATGAGA AAAAAAAAAT TGAGTTTTTC ATTTGTTAAA ATTAACCCAA GTACAAACTA ATTTATGCAA
AGTTCTCACG TACATTTTCT CCAAATTCTT AATTTTCACT TGATAAATTA ATTTTGACAT TTTGAGAAGG TGAAACATAC
CCTTCTCAGT TAATTTTTTC TTCCTGTCTT CTTTTTTTAA CTGTTCTGGT AACCATGTAT CTGTTGCTGT ATTTTATATT
TCATAAATAG ATGCTGACTG AGAGTGAAAG AATGAGGATG AAGAAACTGG ACGAGCTATG CAAGACAATA GAGTCTCTGT
CTTTGAAACC ATAACGTATG CGTGTGTGTG TGTGTTGTGT TTACTAGCTT GGTCTATTTA ATTTTTCAGT GGCTTGTGTT
TAAATGTACT TGCATTCTTA TTATTCAAGA TTAAAAATGC CTTGTGGACG TCACATCGAG AGAAAAAAAA AGGGGGAA

>Vigan.08G116400.01
CAATGCAAAA CCACATCATA ATCCATCATC ACTGAGGTGT TCATTGTGGA TGCAACATCA TATTACTTTC AGTTTTACTA
CAAAATCTCC AGGAGATCAA TTATATTTCT GGAATGCATC AAATACTTAA TAAAGAAAGG CAAAGAGTTT CTGGGAGTCT
CTTTACTGTA TTTAGAAGCC AAGAGAGAAG AAGTTGTTGA AATGTGAAGA AAGAGTATTG AAGTGAAAGC AACAGAGGCC
TCTTGTTGAA ATAAACCAAC ACCAAAATCA TTGGACCAAG TTTGTGGGGA AGCACATGGG CTTAGTTTGC AGCAGCAGAG
AGGAAATGCA GAAAATGAAG AACCTTGGCA GCATTGGAAG CAGTGGGAGG CTATCAGCAG AAGAGTATGA GGATGAGGAT
ATTTCAAAGC TCGCCATCTC CACGTTTCAG TCTAAGGAAG AAGAAATTGA GAGGAAAAAA ATGGAGGTGA GAGAGAAAGT
TGAACTCCAA CTTGGTCGTG CTGAAGAAGA GACTAGGCGC TTGGCACACA TTTGGGAAGA GCTTGAAGTG CTTGATGATC
CCATGAGGAA GGAAGTTGCA ATGTTACGCA AGAAGATTGA CTTGGCTAAC AGAGATTTGA AGCCACTGGG ACTTAACTAC
CAGAAAAAGG AGAAAGAGTG TAAAGAAGCC TTGGAAGCTT TCAACGAAAA AAACAAAGAG AAGACTCATC TGGTTGCTAC
ACTAGTTGAG ATGCTGACTG AGAGTGAAAG AATGAGGATG AAGAAACTGG ACGAGCTATG CAAGACAATA GAGTCTCTGT
CTTTGAAACC ATAACGTATG CGTGTGTGTG TGTGTTGTGT TTACTAGCTT GGTCTATTTA ATTTTTCAGT GGCTTGTGTT
TAAATGTACT TGCATTCTTA TTATTCAAGA TTAAAAATGC CTTGTGGACG TCACATCGAG AGAAAAAAAA AGGGGGAA

>Vigan.08G116400.01
ATGGGCTTAG TTTGCAGCAG CAGAGAGGAA ATGCAGAAAA TGAAGAACCT TGGCAGCATT GGAAGCAGTG GGAGGCTATC
AGCAGAAGAG TATGAGGATG AGGATATTTC AAAGCTCGCC ATCTCCACGT TTCAGTCTAA GGAAGAAGAA ATTGAGAGGA
AAAAAATGGA GGTGAGAGAG AAAGTTGAAC TCCAACTTGG TCGTGCTGAA GAAGAGACTA GGCGCTTGGC ACACATTTGG
GAAGAGCTTG AAGTGCTTGA TGATCCCATG AGGAAGGAAG TTGCAATGTT ACGCAAGAAG ATTGACTTGG CTAACAGAGA
TTTGAAGCCA CTGGGACTTA ACTACCAGAA AAAGGAGAAA GAGTGTAAAG AAGCCTTGGA AGCTTTCAAC GAAAAAAACA
AAGAGAAGAC TCATCTGGTT GCTACACTAG TTGAGATGCT GACTGAGAGT GAAAGAATGA GGATGAAGAA ACTGGACGAG
CTATGCAAGA CAATAGAGTC TCTGTCTTTG AAACCATAA

>Vigan.08G116400.01
MGLVCSSREE MQKMKNLGSI GSSGRLSAEE YEDEDISKLA ISTFQSKEEE IERKKMEVRE KVELQLGRAE EETRRLAHIW
EELEVLDDPM RKEVAMLRKK IDLANRDLKP LGLNYQKKEK ECKEALEAFN EKNKEKTHLV ATLVEMLTES ERMRMKKLDE
LCKTIESLSL KP*