GBrowse Details

Vigan.08G096100.01

Basic Information:
Name: Vigan.08G096100.01
Multiple alignment
Variant Information
Position: Chr08:8074886..8079825 (- strand)
Length: 4940
Functional Information:
Description: Similar to Ras-related protein Rab7. [Q41640, Vigna aconitifolia]
GO: Biological Process: GTP catabolic process (GO:0006184)
Biological Process: intracellular protein transport (GO:0006886)
Biological Process: nucleocytoplasmic transport (GO:0006913)
Biological Process: signal transduction (GO:0007165)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Cellular Component: membrane (GO:0016020)
Molecular Function: GTPase activity (GO:0003924)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily (IPR001806)
Ran GTPase (IPR002041)
Small GTPase superfamily, Rho type (IPR003578)
Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, Ras type (IPR020849)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.59,18.79,23.72,19.90,38.74,17.56, 27.32,24.86
Arabidopsis thaliana homolog: AT4G09720.3
Structure :
Position: Chr08:8074886..8074939 (- strand)
Length: 54
Type: three_prime_UTR
Position: Chr08:8074940..8075006 (- strand)
Length: 67
Type: CDS
Position: Chr08:8078318..8078463 (- strand)
Length: 146
Type: CDS
Position: Chr08:8078541..8078621 (- strand)
Length: 81
Type: CDS
Position: Chr08:8078838..8078984 (- strand)
Length: 147
Type: CDS
Position: Chr08:8079104..8079203 (- strand)
Length: 100
Type: CDS
Position: Chr08:8079435..8079461 (- strand)
Length: 27
Type: CDS
Position: Chr08:8079536..8079588 (- strand)
Length: 53
Type: CDS
Position: Chr08:8079589..8079825 (- strand)
Length: 237
Type: five_prime_UTR

>Vigan.08G096100.01 class=Sequence position=Chr08:8074886..8079825 (- strand)
ATTTCGGTTT TTTTTTAGTC CATGAAATTT ATTCATTGAA GGAAAATTAA TTTTCCCTTT TTCCTTTTTT TTTTGTTTTT
GGCGAAATCT GTTTAGTACA AGAACAGTGC AGAAAGCGAT CGAAAATGGC GTTTGTTTTC CCCTTTTGTG CTCGTAGTTG
ACCTCTAAAT CAAATCCCTC GATAAAGAAG CGAAGGAAGG AACAATCGAG TGCGTTGCGC CCCCACCGTA AGCAGCTATG
TCGTTGCGCA GGCGAACCTT GCTCAAGGTC ATTGTTCTCG GCGATAGCGG GTACGTTCTT GGTGTTTTTC CCGCAACACC
GCTTTTGAAA ACGCTTTATC TGATTCGTTT TTTGCCATTG CCAGAGTGGG AAAGACCTCG TTGATGAATC AGTATCCTCA
CGCGCCGCGT GTCGCAGTTT TTTCACCGCT TTTCGGATTC ACTTTGGTTT ACAATGATTT ATTATAATTG TAATTGTAAT
CATAGCCAGT GCATCTGTAA AGTTTATCAG ATTTGTGTTT TTGGTTATTT TGATGATATT TTTTATAGTT CTTGACAATT
CTTTACGTCC CTTATTTTTT TTTTTTGGAA TTTAGCTGTG TGGACCTTAA CTAACTGTCT AGATACGTGC ACAAGAAGTT
TAGTCAGCAA TACAAGGCTA CCATTGGTGC TGATTTTGTC ACTAAAGAGC TTCAGATTGA CGACAGACTT GTCACTCTAC
AAGTGGGTTT CGTTTCCTAT TCCAACGGTA TTTCAGTGTT CTTTTGAATT TTTCTGTTTT AGGCTTGTAG TGAAGATTGT
GTTGTGTTCC AATGTGTTTA TTTTCTGTGT CTGATTGATA GATATGGGAT ACTGCTGGGC AAGAGAGATT CCAAAGTCTC
GGGGTTGCAT TTTATAGAGG CGCGGATTGC TGTGTTCTTG CGTATGATGT TAATGTGATG AAATCTTTCG ATACCCTTGA
CAACTGGCAT GAGGAGTTTC TCAAACAGGT AATTATTGTC CTTTTCAAAA TGCTTTATCT CTTGCTGCTT CGACTATTGT
CTAGGGTGTG GTGTTTTTTC ACATGGACAA ATGCATCTAT TAGCTAGTGT GTCCTCACAA CATTCACAGA TTGTCTAACC
CTAATTTATA ACCTACCAAT GTTGGAATTT GCTGGATAAG CTTTCTGTTC AGATTTATGT TCTCGTTGTA TCTTTGTGAT
GCAGGCAAAC CCACCCGATC CAAGGTCATT TCCATTTATT TTGCTTGGAA ACAAGATTGA TATTGATGGC GGGAATAGTC
GAGTGGTAGG CAAATATTAT TACACTTTAA CATTTTCTCA CTTTACCTCT GAGTGTAAAA TGTTTATTTA TCTCACATGC
AGGTTTCTGA GAAGAAAGCA AAGGATTGGT GTGCTTCAAA AGGGAATATT CCCTACTTTG AAACATCCGC AAAAGAAGAT
TTCAATGTTG ATGCTGCATT CCTGTGTATT GCCAAGGCTG CTCTTGCCAA TGAGCACGAA CAAGACATGT AAGTTTCACT
CTCGATTGTC ATGCAGATAC ACATGAATAT AGGTTGTACT ACTATATAAC TGTACCGGAC ATGTACCAAC TATTGTCAAT
GATGTTAGTA CCACTTGCAG TTTAAGATTT AATATACAAC TACTATGCAT TAAGGCATAT CTACAGACTA TCACTGTTGG
AATGTCAATG AAGTGATAGA AATAGAAAAT GGTTCACTGG TATGCGTTTC ATGTCTCATA TTTCTGTTTT TGGCCTAAGT
TCTTTATTTA ATGTGAATTT TATTACTGTT TCTTATAAAG AAATTCCCAA ATCTGCTCCC TTCTTCCAAA CATTAGTGGC
TTGTATTTGT ACAAGTCAAT CCTAATTGCT CATGGGCAAT CACAAGACTA CATCTTAGAT GTGCTTTTGG CATTGATGCA
GGCAATATCT AAACTCATCC ATTTTCTTTA AAAGGTTGTG TTCATTAAAG GCAATAAATG ATCTCATGAG AAATTGATTA
GCCACATTAA AACCTAGAGC ATCGGAAAGA ATATCTCCAT CTAAGGCTTT CTCTTTTAGA ATTTCAGTTT TTCACAACAA
CTTCCATGTT GATGACATGT TTTGAGTTGC TATTATTGTG CATAGCTTCT GCAATGTCCA AACTCCTCCA TTGTTGGCAT
ATGCAATGGA AGCCGTTTCT CTTGATAATC TTTTTTATTC TTAGTTCTCT TTGATATTCT CTTCTAGTTG CAGATTCTTT
GTTAAGGAAT TGGCTAAAGA CGATGACATT TCTTCTTGTG TGTATCATAC TAATTGAAAA TAGATTATGT CATTTTTCTT
TTTTTTAATT GAAAATTTTA TATTGAAGTA GTAGTATTGA AACTAGTAGA AATAATGGAT AGAAAAATTC AATGCTTTTG
ACCTTTACCC ATATTCTTTT GCACTCTTAA TTTGTGAACC AATAACTGCA TCTTATTCAT GCAACTATAT AGTTGCATCT
TAAACTATCA ACTTGTATTG CCTTTGTATT GGGAAACGAA ACTAGGAGAA GAAGTGTTTG AACATTATGA GAAGTATTGC
CTTTGTATTG ATGAGTCACC CACATAGGTT AACTTGACAT TATGATTATA CTGTTAGAAC ATTATGACAT TATTAATATA
TATCTGAATA TTATGACATT ATGATTACGA TTTTTCAATT TAAATTTGTT TTAAATATTG TGATGTAGAG GTAATGTTCT
CAAATTATGT TGTTTTTATT CATATATATT ATATATAAGT GTAATTTTGC ATTTTAGGTC AAATCATAGC ATCTTGTGTT
CCAAGTTACG AGTTTTCACC TTCCTCCAAA TCTGGGGTAG AAAAGGTGCA TTAAATGAGT TGACTTGTTG GTTCCATCAT
GTTTTTGCCG TCTCTAGTGA AAGCTATGAA AAATTGTAAT ATACCACCAC TTTGAAATTT TTGGAGTTTG GAAGAAAAGG
TGAGGTTGAA AAACAAAGGT TGATGAACAG ATTCAAAGTA TTCATTGAAG CATTGACTTC ATTGATATTA CTAATTTCAA
GACATGAAAC CCATTTATGG AATGATAGCT ATTGTGAAAA AAACCCAATG ATCTTCAGTA AATTTTCATT CAAATCATAT
GTGTCTAGTG TTCAGAGAGA AAGTAATTAT GAGGAAGACT CTTATTACAA AAAAATGGTA GTGAAGTTGT TCAAGATAAA
ACGCAATGAA GAAAATGCTA GGATTCATCT AAAGCAGAAG CAACCTAAAA CCTGCTGTCA AATGTCAATA CCGATAAAAA
GTTATGAAGA TTCTGAAACA AATAAAGTAA ATGTTCAGTT CTGTTGATGC TTAAGATCGA TGTTCCACTT TCAAGATGTA
AAAATGCAAT ACTTGTTTGA TATTCATTTA TAGGAGCCAA ATGTTCTTGG TGGCTCTATT TTTTATTGCA GCTAATCAGG
TCACCATTTA TATCCCGCCA TGGTCTTCTG TTCCGAAATT GTTTTTAGGA AAAGAACATG CGCGGTTAAG ATCAGAAGTT
AAAGTCATGC AACTTTTTCT CGTGAACATT TGACCCTTAA GTTGTAAACT TATAACTTTG ACACTTCATA TAATGTCCAA
CGGTCAATAT TTGATCCCTT TCACTTATCT TGATGACACA CTGCTGTCGC TTGATATTAA CCTATCATGA CTGGTTCATT
TCCAACATAC TAACAATACT TTGTATCAAT GCCGTAGGCA CAATTAAACT AAGAAATTAT CTTGTTGCTA TGGAAATGAT
ACTCATTTCA ATCAAGCTTC GTTTGGTGTT CAAATTTCCA TTGTCAATAA ATGTTAAATT CAATTAATAC TTGAGGAAGT
TTGATGTTCA ATTTACTAGA TGCAATTTTG GGTTCGATGT TCAGTTATTG AAGCAAACAG ATTTTTAATG TTGTGATAAA
TAGATTGTCC AAATTATCAG GTCTTTTATG GAGTCTTAAT GTCTAGTAGA GAGTCTTCAA ACATTTTCCT GCTCCATGAT
TTCTTTGTCT GGTTAAAAAT ATGAATTCCT CACATATTTC TTTTGTAGCT AATAGTTTAT TATGTTTAAA AAAAACCGTA
TTCTTATGAG ATGTTATGAA TGTCTGGGCA TGACATTCTG CTTTTAACTT TATTCTTATA GTAATATTTT CTTTTATATA
GATTGTGAGT TATTGTCAGT GTTATATATA TTTTTATTCA GTTTGAAATG AAAATCATAT AGAACAAAGG GGTAGGAGAT
AGTTGGAGTT TGCTCCTCAA TATTACACAT CCTGTTTATG TATTTAGCTT TTCCATTTTG AAAAATGAAA ACAACAGTCT
TTAGGTTAGT GTGATATTCA TAATTTTTAA CTATAGGGAA AAGGCATGTA AGTATGTATA TATACATGCA AAGTGCCTAC
TACTGTTAGC CAAGGAGGTC GAGTATATAA ATATTAACAC AAGTTGATGA ATATCTTACT GCATTGTTTC TGTTTTGGGG
GATAATGGAA AGGAAGCTTT GTACTGTTAG ACCATTTCCC GAACTACAAG GTTGGAACAG GGATGGTAGC GGTGGTGAGA
GCCAGGGTGA GAAAGCCTCC TTCGAATCTG CTGATAGATA TCACCACCCA CTTTTTTATG CACTTTTCCT GATCCCATAA
AACATAGTTA CGTTTTCTAT TTTTTACATC ACTTCATTGG CTATTTTGAA TATGCATATT AATCCTTCTT TGGAGTCCCA
TGCCATATTC TGTTTGGCAT TTTTTTATTT CCAGATTGCT TTATTGGGAG ATAGCTGTTA ACTGATTTCC GAACTATTTT
ATTTCAATTT CAATTGCAGA TATTTTCAAG GGATTCCTGA GGCAGCAGTT CCAGAAAATG AACAGAGGAG TGGATGTGCA
TGCTGATATG GAGATACTGA ATAATTTTCT GAACTCCCCT TGTTGCTGTA GTTCAAACTC 

>Vigan.08G096100.01
ATTTCGGTTT TTTTTTAGTC CATGAAATTT ATTCATTGAA GGAAAATTAA TTTTCCCTTT TTCCTTTTTT TTTTGTTTTT
GGCGAAATCT GTTTAGTACA AGAACAGTGC AGAAAGCGAT CGAAAATGGC GTTTGTTTTC CCCTTTTGTG CTCGTAGTTG
ACCTCTAAAT CAAATCCCTC GATAAAGAAG CGAAGGAAGG AACAATCGAG TGCGTTGCGC CCCCACCGTA AGCAGCTATG
TCGTTGCGCA GGCGAACCTT GCTCAAGGTC ATTGTTCTCG GCGATAGCGG AGTGGGAAAG ACCTCGTTGA TGAATCAATA
CGTGCACAAG AAGTTTAGTC AGCAATACAA GGCTACCATT GGTGCTGATT TTGTCACTAA AGAGCTTCAG ATTGACGACA
GACTTGTCAC TCTACAAATA TGGGATACTG CTGGGCAAGA GAGATTCCAA AGTCTCGGGG TTGCATTTTA TAGAGGCGCG
GATTGCTGTG TTCTTGCGTA TGATGTTAAT GTGATGAAAT CTTTCGATAC CCTTGACAAC TGGCATGAGG AGTTTCTCAA
ACAGGCAAAC CCACCCGATC CAAGGTCATT TCCATTTATT TTGCTTGGAA ACAAGATTGA TATTGATGGC GGGAATAGTC
GAGTGGTTTC TGAGAAGAAA GCAAAGGATT GGTGTGCTTC AAAAGGGAAT ATTCCCTACT TTGAAACATC CGCAAAAGAA
GATTTCAATG TTGATGCTGC ATTCCTGTGT ATTGCCAAGG CTGCTCTTGC CAATGAGCAC GAACAAGACA TATATTTTCA
AGGGATTCCT GAGGCAGCAG TTCCAGAAAA TGAACAGAGG AGTGGATGTG CATGCTGATA TGGAGATACT GAATAATTTT
CTGAACTCCC CTTGTTGCTG TAGTTCAAAC TC

>Vigan.08G096100.01
ATGTCGTTGC GCAGGCGAAC CTTGCTCAAG GTCATTGTTC TCGGCGATAG CGGAGTGGGA AAGACCTCGT TGATGAATCA
ATACGTGCAC AAGAAGTTTA GTCAGCAATA CAAGGCTACC ATTGGTGCTG ATTTTGTCAC TAAAGAGCTT CAGATTGACG
ACAGACTTGT CACTCTACAA ATATGGGATA CTGCTGGGCA AGAGAGATTC CAAAGTCTCG GGGTTGCATT TTATAGAGGC
GCGGATTGCT GTGTTCTTGC GTATGATGTT AATGTGATGA AATCTTTCGA TACCCTTGAC AACTGGCATG AGGAGTTTCT
CAAACAGGCA AACCCACCCG ATCCAAGGTC ATTTCCATTT ATTTTGCTTG GAAACAAGAT TGATATTGAT GGCGGGAATA
GTCGAGTGGT TTCTGAGAAG AAAGCAAAGG ATTGGTGTGC TTCAAAAGGG AATATTCCCT ACTTTGAAAC ATCCGCAAAA
GAAGATTTCA ATGTTGATGC TGCATTCCTG TGTATTGCCA AGGCTGCTCT TGCCAATGAG CACGAACAAG ACATATATTT
TCAAGGGATT CCTGAGGCAG CAGTTCCAGA AAATGAACAG AGGAGTGGAT GTGCATGCTG A

>Vigan.08G096100.01
MSLRRRTLLK VIVLGDSGVG KTSLMNQYVH KKFSQQYKAT IGADFVTKEL QIDDRLVTLQ IWDTAGQERF QSLGVAFYRG
ADCCVLAYDV NVMKSFDTLD NWHEEFLKQA NPPDPRSFPF ILLGNKIDID GGNSRVVSEK KAKDWCASKG NIPYFETSAK
EDFNVDAAFL CIAKAALANE HEQDIYFQGI PEAAVPENEQ RSGCAC*