GBrowse Details

Vigan.08G093800.01

Basic Information:
Name: Vigan.08G093800.01
Multiple alignment
Variant Information
Position: Chr08:7836561..7841049 (- strand)
Length: 4489
Functional Information:
Description: Similar to Uncharacterized protein. [I1JDC2, Glycine max]
InterPro: Chlorophyll a/b binding protein domain (IPR023329)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:22.23,12.29,31.18,106.64,0.59,14.31, 2.26,33.38
Arabidopsis thaliana homolog: AT1G34000.1
Automatic updates:
Name: NM_001254101 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100802195 (LOC100802195), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:7836561..7836880 (- strand)
Length: 320
Type: three_prime_UTR
Position: Chr08:7836881..7836995 (- strand)
Length: 115
Type: CDS
Position: Chr08:7840510..7840916 (- strand)
Length: 407
Type: CDS
Position: Chr08:7840917..7841049 (- strand)
Length: 133
Type: five_prime_UTR

>Vigan.08G093800.01 class=Sequence position=Chr08:7836561..7841049 (- strand)
CTTGTCCACA CACATACTCA CCCTCTCAGT TTGATAAGAC CACATGTCCA ACTCTAATGT TCAAACAAAG ACACAAAAAT
AAAAAATTAC AAAAATAAAA TCCAAGGATT GAGTATCACC AATCCAAGAG AAAATGTCTG TGACATCTTC GTTCCCATGC
ATCAAAATCC CAGCTTGTTC CTCCTCTCCA ACATGCACAT CTTCATCAAA TTCATCCTTT AGATTTTCTT CTTCCAAACC
TTATGCTTCT ATCACTGTAA GGAATTCTCA GACTGAAGGG CCTCTCAGAA GACCGGTGTC TCCTCCTGTT AGGGAACCAT
CTAGTACCAT CCCTCAGCCT CTGAAGCCTT CACCTCCTTC TCAGCCTCCA CCCCAGAAGG CTGCTCCTGT TGTTGGAGAC
GATACGAATG TCATTACATT AGAGTTTCAG AGGCAAAAGG CTAAGGAGCT GCAGGAGTAC TTCAAAAAGA AGAAACTTGA
AGAAGCAGAT CAGGGTCCTT TCTTTGGATT CATAGGAAAA AATGAGATTA GCAATGGAAG GTAATTTATC TATTTATATT
TTTCTTTTGG GACCTTTCAA AGTTGAAGTT CATCTTATGC TGGTTTGGCT AATTGCAGTT TTTTTTAACA TCGGTAGAAC
TAGTTAATTG AGAGCTACTA TATATTTGGT TGAATGTTGG GGGTCATGTG GTGTTGATCA AAATATTGAC TGATCGTTCT
AGCAAATTTC GAGGGATAGT ACCTATAAAT TGGTTTCATT TATGTTCTTC CCCTTTTCTG TGACAAGGCT ATATATGAAA
ATTCATAATT AAAAAACATA GCATCTTTCA CTGTGACGGT AATCTTAGAT CTGTTGTTAT TACGGAGTAG GAAAATCAAG
ATGATAATAG GAAGATATCA CTTTACCTGT TGTTAGTGAG CCAATTATAA TCTAGGTCCC CTTTTGTGTT TTTTCTTCCA
TTAAGGAATG GCAAACATTT GAATATGTGT TCGGTTCAAT TTATTTTGGA AAAGTACTTG CTTATTTTTG TCAACTTTGC
GTAAGCTTTT GAGAAATAAG AAATTCAAGA ATCACTATGT TATTGTAGAT TTTGTTACTG ATATTACTGA CGAAAATAAG
GAAGGGAAAC AGATTGCAAA ACTTCAATAG TTTGAAAGGA AATTAGAGCA ACCTACGAAG GACTAGGCTT CAATGTAAAT
TAAAATTTTC GGACTGTTTT CATTTGGGTT CATACAGAAG TAAAAAAGTC TGAATTACCT ATATTTTCAT TGCTGTCTCT
TCTTGCACGA GCGACCAAGC TTGCCCCTTT TCTTCCAGGG CAGTGGTGCA TACTTAAGTG TAGAAAATAA TCTAAGTACG
AGTCTAAGTA TTTGTATATA AATAACAAAA ATAAACATTA TATAAGAAAG AAGATCTATA AATTCATAAT ATTTAGGTTT
TGGATTAAAA GTGATGTAAA TTCTTTACGT AGGTTAGACT CAGATCACAT TTATGTAATC TTTCTCTAAT GAACTCCCCT
AAAAGAAACC CATTACTAAG AGGAAGGGAA AATGTGACTT GAGGAAGGAT TGAACTTCCA ACATCAATGG CACACCCCAA
ATGTTAAAAA AACTTGTCCA AAATTTGCTC ATTTTGGGCA GTGTTTCAGG AACAATTGTT CATGTGTCAG ACAATCCAAT
ACACATCAGT GTCAAACACA GGCGAAACCG TGTACTAAGT TGTGTGTAGT ATAAACTGAC GAGTACTGAA CTGAGTACGG
TCCCAGGGTT TATGTCCAAA TATCACTTTC CAAGTTGAAC AACCATCTAC ACTTATGTTT GGGATGAAGG CAACTCAACA
TAAAACAAAA TATTAAAGCT TTTTGGAATT TCTTTTAGGA ATTTAAATAA CCACTAAGAT GGCAAAAACG GAGATAAAAG
TACTAGGGGA CTGATTTCTC TTGATTATGA AACCAGACAC TCCCTGGATA AAACATCCTT TGAGTTGTCA CTTCCAATTT
CCTTGTTGCA GATGAAATCC CCTACATTTG TTATAACTAA GGGTGGGCGA AATTAATCTA ACTGTATTAA ACTATAGTTA
ACTGCACTAT ATAATACTAT ACAAAATTGA ACTATTCATA ATAAAAATTG ATTTATAGTT CAGTTTTAAA AAACTGAACT
TTTATAAGTT AACTACTCAC TAAGGGTGCG TTCGTTTGAA GCGATTGCAC TGTTCACACA GTTTTGCGAA CGAGGAATTA
AGCCAGTTTT GCGTTCGGTT GGAGTGAAAT ACGCGGACGG ATTTGCGATG AAATGCGGGA TGGTTGCACT GTTCAGTCAT
CCGCGGTTGT GAAGAGATTT GCGCGGATTG TGAGCGAAAT GTCGTGTGTG CCCTCAGTTA AGAAACGCTG CAAACGCGTA
ACCGGTTACG CGTAACAGGT TACGCGTTCG TGTAACCGGT TACGAGTTCG CGTAACCGGT TACGCGTTCT CGTAACCGGT
TACGCGTTCT CGTAACCGGT TACGCGTTCT CGTAACCGGT TACGCGATTT CCTATTTTTT TTTTTTTAAG TTTTTTTTAT
AATTATTTTA ATATTAATAA AATTAGGTAT ATTATATTTT TTAATTTTTT AAAAATAAAT TGATTATTAT ATTTTCTAAT
TTATTTTTAA TAAATTGATT ATTATATTTT CTAATTTATT TTTAATAAAT TCATTATTAT ATTTTCTAAT TTATTTTTAA
TAAATTGATT ATTTAGTTTT CTAATTTATT AAAAAAAACT GATTATTTAG TTTTTTTAAT TTTTAAACAT TAATTTTATA
AATTATTAAT AATTTTTTTT TCTTTATAAA CATTTTTACA ATTAAATATA ACATTTATAA ATAACATTTT ATATTACTTT
TATAACTAGG GGCATTTTGA TAATCCTTAA TTTTTATCAA TTAAACTAAT TTTTAAAATT TGTCACATCA ATCAAATCCT
ACACTAATTC TCACAAACTT TACTTCCAAA TCCACTCTCA ATTACCCACA AATCCACTCA AAAAAACAAC AAAAAAATTA
CCCTCAAATC CACTCAAATC CATTCAAATC ATCTCCCCCA AATCACTCCA AACGAACAGA GCCTAACTGA TATGTAACTT
TTATTTTTTC CTTTCTCTTC AATCGTGTCC TATCCTAAAT AAGTTAAGAT CCAGTTTCTT TGTAGCTTTT AGATTGATTA
GTAGATGTGC TTTTGTAAAA TCTTTTAGCA CTAAAAGCAT TTTCATTGAA GAATTTATTA CACCTATTTG CATTTTTTTT
TTCATTTTAC TATTTATTTC ATATTTCCTT TCCTTTTGTT ATAAAAGTTG TTATATTAAT TTTAGGTAGA GCTTCTTATA
GCAAATTTAG CTATGCAACT CCCAATGATA GAGAACCAAG ATTCTTATAA AGTAATTGAA AAGGAAAACT GATAAAAAAA
TTGGTAGAAC AAAAAATAGT TTAGTTGAGT CCATCTGAAT TAATTTTCAG TTCAGTTCAG ACTAATTATT TTATGGTTCA
CTGTAGTTTT TAACAGTGTA GTGTAGTTCA GTTAATTTTG CCCACTCCTA ATTATAACCA TGGTTTCTTT AGTGTAGCAA
CTTTACCCAA AATCTCCTGA CAAGTCGAAT TTTGTAGGTC AAATTAAGGA TGTAAAGTCA TGAAGTTTTA TGATATCTAT
ATAGTTAACT TCATTCATAG TCATGCTCAT ATCTCGCTGT TCCTAGCATA AACATGAGCC GAAACAACAA TTAAGTGGTG
TGGAGCATCA AAAAACATCA CGCATAGCAA TTACAATTCA AACAAAAGAA AATATACGTA GAATTACTCA ACTAAATTAA
GTTTAAATAT CATCAAAGCC AAATTAAACC ATTACCTTGT GTTTGAGATT CAACTTAGCC AAATTTGCTC TTATGCGAAT
GCAAAGCAAA CGCATAGGAA CTTAGGTAGC ATAGATGCTT AAATCTCAAT TAGGTAGTAT GAAATTCTCA AAAAAGTATT
TAAATGTTTC ATTCTTTTTA ATACGATATC ATTCTGGAAT TTTGTTTGAA ACAGATGGGC AATGTTTGGT TTTGCTGTTG
GATTGTTAAC AGAGTATGCA ACAGGCTCAG ACTTTGTTGA TCAAATAAAG ATCCTTCTCT CCAATTTTGG GATTGTAGAT
TTGGAGTGAA TACCACAAGA TTATATATAC TGTCAATAGT TTCTTGTAGC TTATCCTAGC GCAAACAATG TTCATCAATT
TGTTTCATCT TCATATATGG CAAGCAATCT TGCTTCTTTG TCTCACATTT ACGAAATAAC AAAAGCATCA TGATTTTCCT
TTTCCTTTAT GCTCAAACTC TTATAAATAT ATGGTAAATT AAGTACAAAC ATGTTATGAC ATGAGTGACT GATAAGCATG
TATCTTAAGT TTGTGATCAA TCCATGTATA TATGGAGGAA AATTTCTTAG AAGTAGTTAG TTAATTTAAT GAATCTTAAT
TTTTCGTTA

>Vigan.08G093800.01
CTTGTCCACA CACATACTCA CCCTCTCAGT TTGATAAGAC CACATGTCCA ACTCTAATGT TCAAACAAAG ACACAAAAAT
AAAAAATTAC AAAAATAAAA TCCAAGGATT GAGTATCACC AATCCAAGAG AAAATGTCTG TGACATCTTC GTTCCCATGC
ATCAAAATCC CAGCTTGTTC CTCCTCTCCA ACATGCACAT CTTCATCAAA TTCATCCTTT AGATTTTCTT CTTCCAAACC
TTATGCTTCT ATCACTGTAA GGAATTCTCA GACTGAAGGG CCTCTCAGAA GACCGGTGTC TCCTCCTGTT AGGGAACCAT
CTAGTACCAT CCCTCAGCCT CTGAAGCCTT CACCTCCTTC TCAGCCTCCA CCCCAGAAGG CTGCTCCTGT TGTTGGAGAC
GATACGAATG TCATTACATT AGAGTTTCAG AGGCAAAAGG CTAAGGAGCT GCAGGAGTAC TTCAAAAAGA AGAAACTTGA
AGAAGCAGAT CAGGGTCCTT TCTTTGGATT CATAGGAAAA AATGAGATTA GCAATGGAAG ATGGGCAATG TTTGGTTTTG
CTGTTGGATT GTTAACAGAG TATGCAACAG GCTCAGACTT TGTTGATCAA ATAAAGATCC TTCTCTCCAA TTTTGGGATT
GTAGATTTGG AGTGAATACC ACAAGATTAT ATATACTGTC AATAGTTTCT TGTAGCTTAT CCTAGCGCAA ACAATGTTCA
TCAATTTGTT TCATCTTCAT ATATGGCAAG CAATCTTGCT TCTTTGTCTC ACATTTACGA AATAACAAAA GCATCATGAT
TTTCCTTTTC CTTTATGCTC AAACTCTTAT AAATATATGG TAAATTAAGT ACAAACATGT TATGACATGA GTGACTGATA
AGCATGTATC TTAAGTTTGT GATCAATCCA TGTATATATG GAGGAAAATT TCTTAGAAGT AGTTAGTTAA TTTAATGAAT
CTTAATTTTT CGTTA

>Vigan.08G093800.01
ATGTCTGTGA CATCTTCGTT CCCATGCATC AAAATCCCAG CTTGTTCCTC CTCTCCAACA TGCACATCTT CATCAAATTC
ATCCTTTAGA TTTTCTTCTT CCAAACCTTA TGCTTCTATC ACTGTAAGGA ATTCTCAGAC TGAAGGGCCT CTCAGAAGAC
CGGTGTCTCC TCCTGTTAGG GAACCATCTA GTACCATCCC TCAGCCTCTG AAGCCTTCAC CTCCTTCTCA GCCTCCACCC
CAGAAGGCTG CTCCTGTTGT TGGAGACGAT ACGAATGTCA TTACATTAGA GTTTCAGAGG CAAAAGGCTA AGGAGCTGCA
GGAGTACTTC AAAAAGAAGA AACTTGAAGA AGCAGATCAG GGTCCTTTCT TTGGATTCAT AGGAAAAAAT GAGATTAGCA
ATGGAAGATG GGCAATGTTT GGTTTTGCTG TTGGATTGTT AACAGAGTAT GCAACAGGCT CAGACTTTGT TGATCAAATA
AAGATCCTTC TCTCCAATTT TGGGATTGTA GATTTGGAGT GA

>Vigan.08G093800.01
MSVTSSFPCI KIPACSSSPT CTSSSNSSFR FSSSKPYASI TVRNSQTEGP LRRPVSPPVR EPSSTIPQPL KPSPPSQPPP
QKAAPVVGDD TNVITLEFQR QKAKELQEYF KKKKLEEADQ GPFFGFIGKN EISNGRWAMF GFAVGLLTEY ATGSDFVDQI
KILLSNFGIV DLE*