GBrowse Details

Vigan.08G074100.01

Basic Information:
Name: Vigan.08G074100.01
Multiple alignment
Variant Information
Position: Chr08:5883425..5885303 (+ strand)
Length: 1879
Functional Information:
Description: Similar to 2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 1. [XP_007038545.1, Theobroma cacao]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: iron ion binding (GO:0005506)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705)
Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
Molecular Function: L-ascorbic acid binding (GO:0031418)
InterPro: Oxoglutarate/iron-dependent dioxygenase (IPR005123)
Prolyl 4-hydroxylase, alpha subunit (IPR006620)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:48.73,29.69,15.10,16.65,21.92,19.24, 17.31,17.29
Arabidopsis thaliana homolog: AT5G51880.1
Automatic updates:
Name: NM_001249316 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100526938 (LOC100526938), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249316 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100526938 (LOC100526938), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:5883425..5883598 (+ strand)
Length: 174
Type: five_prime_UTR
Position: Chr08:5883599..5883745 (+ strand)
Length: 147
Type: CDS
Position: Chr08:5883968..5884215 (+ strand)
Length: 248
Type: CDS
Position: Chr08:5884553..5884775 (+ strand)
Length: 223
Type: CDS
Position: Chr08:5884920..5885042 (+ strand)
Length: 123
Type: CDS
Position: Chr08:5885043..5885303 (+ strand)
Length: 261
Type: three_prime_UTR

>Vigan.08G074100.01 class=Sequence position=Chr08:5883425..5885303 (+ strand)
CTGTTAAGTA TAAAAATGCT ACCAACTTAT AAGTTGCGCA TAAAAATGAT AGCAAACAAA TGATAGTGTG GGAGAAAAGA
ATTAGGGGTT GTAGAGAGAA AAACCGTATG TACTTAACAG AAATTGGGCC GAACACTCAA ACATAAATTG AACAAATAAA
GAACGTTGGT GGCGATGTCG GAGGGGCCAA CACCAACGAG GAAGAGGAAA ATGGGAGACG CAGAGGATAT AACTCCCAAG
AAACCTGCGG CAAAATGGCC TCTCATCAAA CCCAAAAAGA ATCTTCAGAT TACCCGACTC CGAGATTTCG ATCTCTTCAC
GGTTACAATT CTATCTTCTT TATCCGTTCA ATTCTTTCTT TGTTGGGGTC TAATTTGATA CAGGACTTAG ATTGTTTCCC
CGTACATTGA TATTTTTTTT GTTTGCTTCA AATTCAGTTG AAATTTTAAT CTTTCAAAGA AAATTGAACA GTTCCACAGT
GTCTGCTAAA AGTATCCAGG TGCTTATTGT TTTCTAAATA ATTTTTATTT TATTTGGGTT TAGGTCCAGA ATTTTTTCTC
CTCTGCTGAA TCGAAGGCAT TCGTTAAAAA TGCCGAGTTA ATTGGTTTTG CTCATCAAGG GAGTCTAGGT CCTACTTATG
GTGAAGCTTA CAGAGATAAT GATCGAATCT CGGTGGATGA TCCTATCCTT GCAGATACTA TTTGGGAGTC TGGACTTAGC
AAACTATTCT CTGATATAAA AATTCGTGGA AAGGTTGCTG TAGGCCTGAA TCCAAATATT AGATTCTATA GGTTTGTTTA
TTTCTGTGGC AAAGGTTTCT TGTGGATAAC TTATTAAAAA TACTCAGTTT GCTAAAGTTC TTCTTGGGCC ATTGTATTTT
CAATTAGGAT TGCTAAAAAT TGATACTACA TTTGACACCA TGCTTAGTTA CCTCTGTCCT GCAATTCCTT TTTATCTTTA
GCATCGTATA CACACACCTT AAAAACACCT CCCAAAAGAC ACATTGGTTT TCGAACGTTT CCCTTTCATA TTTGCTGTCC
TAGAATTGGA CCACCGGTCT CTTTAAGTTT GGTTACGAGA AACCTGTTGA TAATTTAAAT GCATCACCTT GGACTTCTGT
ACTTTCAGGT ACAAGACTGG CCAGCGGTTT GGACGGCACA TTGACGAAAG TGTTAATCTT GGAGATGGAA AACGCACTTA
TTATACTCTT CTAGTGTATT TGAGCGGTGG GCCTGGTGAA CTTAAATCAA AGCCCAAAAA TGACTCCGGC AATTCCTCAG
TTCCATCTGT TGATCCTTTA GGTGGAGGAG AAACCGTCTT TTATGGTTCA AGAAATAAGA TTGTGGCTGA GGTAAATTAT
TGATTTTCTT TTAGTGAAAT ATGGTTTGGT AGGTATATTT TTTTCTACTT CAAGTGAGTT TGAATCTATG TTTCATGCAA
ATTTTGGAAT ATGACTATAT GCTTTGGGTG ATAAAATACA ATATTAATTT CGCAGGTGTC TCCTATTGAA GGGACAGCAC
TTCTTCACCT TCACGGAGAT AAATGTTTGT TGCATGAAGC CAGAAATGTT ACCAAGGGTA TCAAGTATGT CTTTCGTTCA
GATGTAGTAT TTGCTTGAAG AATGGTTCAA GAATAGTACC AAATAATCTG GTATTTTCAT CTCCTGAGGG TTTTTTTTTG
GTTAGCCTAT TGCTCAAGAC ATTGTTGTGT TATCTTGATT TTCAGTGTCG GTAATATGTT CAGTGTGGAA GTTTATGCAG
TAGATAATGT ACCTTTACGT GTGAACAGAT TAGGGAAGTT ATTTTGAAAA ACTCGGATAG TAGTGAAAAT CAGGTTATTT
AAACCAATTA TGGAACCTGG TACTGTAATA TAAAGCTTG

>Vigan.08G074100.01
CTGTTAAGTA TAAAAATGCT ACCAACTTAT AAGTTGCGCA TAAAAATGAT AGCAAACAAA TGATAGTGTG GGAGAAAAGA
ATTAGGGGTT GTAGAGAGAA AAACCGTATG TACTTAACAG AAATTGGGCC GAACACTCAA ACATAAATTG AACAAATAAA
GAACGTTGGT GGCGATGTCG GAGGGGCCAA CACCAACGAG GAAGAGGAAA ATGGGAGACG CAGAGGATAT AACTCCCAAG
AAACCTGCGG CAAAATGGCC TCTCATCAAA CCCAAAAAGA ATCTTCAGAT TACCCGACTC CGAGATTTCG ATCTCTTCAC
GGTCCAGAAT TTTTTCTCCT CTGCTGAATC GAAGGCATTC GTTAAAAATG CCGAGTTAAT TGGTTTTGCT CATCAAGGGA
GTCTAGGTCC TACTTATGGT GAAGCTTACA GAGATAATGA TCGAATCTCG GTGGATGATC CTATCCTTGC AGATACTATT
TGGGAGTCTG GACTTAGCAA ACTATTCTCT GATATAAAAA TTCGTGGAAA GGTTGCTGTA GGCCTGAATC CAAATATTAG
ATTCTATAGG TACAAGACTG GCCAGCGGTT TGGACGGCAC ATTGACGAAA GTGTTAATCT TGGAGATGGA AAACGCACTT
ATTATACTCT TCTAGTGTAT TTGAGCGGTG GGCCTGGTGA ACTTAAATCA AAGCCCAAAA ATGACTCCGG CAATTCCTCA
GTTCCATCTG TTGATCCTTT AGGTGGAGGA GAAACCGTCT TTTATGGTTC AAGAAATAAG ATTGTGGCTG AGGTGTCTCC
TATTGAAGGG ACAGCACTTC TTCACCTTCA CGGAGATAAA TGTTTGTTGC ATGAAGCCAG AAATGTTACC AAGGGTATCA
AGTATGTCTT TCGTTCAGAT GTAGTATTTG CTTGAAGAAT GGTTCAAGAA TAGTACCAAA TAATCTGGTA TTTTCATCTC
CTGAGGGTTT TTTTTTGGTT AGCCTATTGC TCAAGACATT GTTGTGTTAT CTTGATTTTC AGTGTCGGTA ATATGTTCAG
TGTGGAAGTT TATGCAGTAG ATAATGTACC TTTACGTGTG AACAGATTAG GGAAGTTATT TTGAAAAACT CGGATAGTAG
TGAAAATCAG GTTATTTAAA CCAATTATGG AACCTGGTAC TGTAATATAA AGCTTG

>Vigan.08G074100.01
ATGTCGGAGG GGCCAACACC AACGAGGAAG AGGAAAATGG GAGACGCAGA GGATATAACT CCCAAGAAAC CTGCGGCAAA
ATGGCCTCTC ATCAAACCCA AAAAGAATCT TCAGATTACC CGACTCCGAG ATTTCGATCT CTTCACGGTC CAGAATTTTT
TCTCCTCTGC TGAATCGAAG GCATTCGTTA AAAATGCCGA GTTAATTGGT TTTGCTCATC AAGGGAGTCT AGGTCCTACT
TATGGTGAAG CTTACAGAGA TAATGATCGA ATCTCGGTGG ATGATCCTAT CCTTGCAGAT ACTATTTGGG AGTCTGGACT
TAGCAAACTA TTCTCTGATA TAAAAATTCG TGGAAAGGTT GCTGTAGGCC TGAATCCAAA TATTAGATTC TATAGGTACA
AGACTGGCCA GCGGTTTGGA CGGCACATTG ACGAAAGTGT TAATCTTGGA GATGGAAAAC GCACTTATTA TACTCTTCTA
GTGTATTTGA GCGGTGGGCC TGGTGAACTT AAATCAAAGC CCAAAAATGA CTCCGGCAAT TCCTCAGTTC CATCTGTTGA
TCCTTTAGGT GGAGGAGAAA CCGTCTTTTA TGGTTCAAGA AATAAGATTG TGGCTGAGGT GTCTCCTATT GAAGGGACAG
CACTTCTTCA CCTTCACGGA GATAAATGTT TGTTGCATGA AGCCAGAAAT GTTACCAAGG GTATCAAGTA TGTCTTTCGT
TCAGATGTAG TATTTGCTTG A

>Vigan.08G074100.01
MSEGPTPTRK RKMGDAEDIT PKKPAAKWPL IKPKKNLQIT RLRDFDLFTV QNFFSSAESK AFVKNAELIG FAHQGSLGPT
YGEAYRDNDR ISVDDPILAD TIWESGLSKL FSDIKIRGKV AVGLNPNIRF YRYKTGQRFG RHIDESVNLG DGKRTYYTLL
VYLSGGPGEL KSKPKNDSGN SSVPSVDPLG GGETVFYGSR NKIVAEVSPI EGTALLHLHG DKCLLHEARN VTKGIKYVFR
SDVVFA*