GBrowse Details

Vigan.08G071000.01

Basic Information:
Name: Vigan.08G071000.01
Multiple alignment
Variant Information
Position: Chr08:5605431..5608462 (- strand)
Length: 3032
Functional Information:
Description: Similar to Uncharacterized protein. [I1NGL5, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: mediator complex (GO:0016592)
Molecular Function: RNA polymerase II transcription cofactor activity (GO:0001104)
InterPro: Mediator complex, subunit Med31 (IPR008831)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.98,6.07,7.53,7.08,8.08,8.70,6.57,5 .96
Arabidopsis thaliana homolog: AT5G19910.2
Automatic updates:
Name: NM_001248135 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527879 (LOC100527879), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001362426 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max SOH1 domain-containing protein (LOC100527879), transcript variant 2, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:5605431..5605784 (- strand)
Length: 354
Type: three_prime_UTR
Position: Chr08:5605785..5606084 (- strand)
Length: 300
Type: CDS
Position: Chr08:5606769..5606847 (- strand)
Length: 79
Type: CDS
Position: Chr08:5607109..5607205 (- strand)
Length: 97
Type: CDS
Position: Chr08:5607869..5607966 (- strand)
Length: 98
Type: CDS
Position: Chr08:5608229..5608278 (- strand)
Length: 50
Type: CDS
Position: Chr08:5608279..5608462 (- strand)
Length: 184
Type: five_prime_UTR

>Vigan.08G071000.01 class=Sequence position=Chr08:5605431..5608462 (- strand)
AAAAAACGAA CACTTAAATT GGAGGGTGGT TCTAATTCAC TAACGTTGAA TCATCGAATT CATAGATTTG TTGGGTCTGT
TTCTGATTCA AAGGCGAGAG CAAGGTCGTG TATCAGTCCT AACCTCACCA AATTTAGTTT TTGAAACTCC CAGTTGTTCT
TGCAGCTAAG AGAGTACCGA TTCCATGGCC ACTCAAATCG AAAGCGACAA TTCAACCCAT ACTTCTCCAT CATCGTAAGC
TAAATTTTCC GACTATTTGC TTGCTTTATA CCACATTATC ATAGCCTAAC ATGTTTGAGC TGATGATATT CAAAGGGCTG
TTGTCCTCTG GTTTATTTGA AGTGTACCCT ATTTTAAGGG CTTTACTTTT ATTCTCCAAA TTCGTTTTTT TTTTTGGGTA
TTGGTGAATT TCTTCTTTTG TGGAAAAAGG TGTGATTTTG GGTTCAGTGG CATGTGGTCA GCTAATTATG GCTATTGGTG
GTTGTGTTTA ATTCAGGCCG AAGAACACAT ACAAAGATCC AGATGATGGG CGGCAACGGT TTTTGCTTGA ATTGGAGTTT
GTTCAGTGCC TTGCCAATCC TACCTATATC CACTGTATGA TTTTCACTTC ACTTCATTTG TATGCTTTGA TAGTATGGAC
TTCATTGAGC AATAGTTCAA GGGGTCTAGC TTAGTTAGTG AGTTGTGTAA ATCCAAACAC GTGTTTAATT TCTACGGATG
AAAAAATTGT GTAGTTGGAC AGCTAGAATA AGTAGTGAAA AATGGGTTTT GCAAGTAATT GGGATTCTTG GATACAACAC
AGCTTATTTT GGACAAGATT AGGCAATTTG GCTCCTATTC TGCATAAAAT AATTTTTTGG GGGATAAGAT TTTAAATTGT
TGTCATGGTT GGATTTCATT GTGATTCTTG ATATTGCGGA AAGTTGCATA CAGATGCAGC TGATGGAGCC AGAATTCTGG
TACCTAAAAT CCTTTATGTT GTTCTCACAA TTGTGGTCGT CATTCCTTTT TAAAATCTGA CAGAAACATG TTTGAGGATT
TGAGAGCTTT CCATCGATCT TTTCTTTTAT CTTTGTTTTG TGTTTTGCCT TTATCTGAGG AGGATTCCTC ATTCTCCTAT
CCCTGCAATT TCTACTGTCT TTATCAAATT TCTTTTTCAC ATTTTTAAAA AGTGGCATGC TTGGTCTTTT GAACGTGTGA
TTTACTTTTG TAGTTTTTAT TTTACCTTAT TCTTATATCT GTTTCACTTT TAAACAGATT TGGCTCAGAA TCGTTATTTT
GAGGATGAAG CATTCATTGG ATACTTAAAG TATCTTCAAT ATTGGCAGCG CCCTGAATAT ATTAAATTTA TTATGTAAGA
ATTATCTTCA AATAAGGGAT TATGTAATGC AATTCTACTT AAGGCATTCA GTTGTTTCAA TTAGGGTAAA AGGATTAAAA
GACTTAGTCT AAGAGGAATA CATCGAAATC AACAGTTAAT GTAAGTCATG TAACTACGAG AATAAATTGG TTCTGGCACC
TTTTACTATT TTGTGTCCAT CCTTACTTTC AGGGATGTTG TTCTCTGACT AAGCTGGATT CCTATCCTGA TTTGGTCATG
TTCTATGAAT GCTAGGTATC CTCATTGTCT TTATTTTCTT GAGCTGCTTC AGAATGCAAA CTTTCGCAAT GCAATGGCAC
ATCCTATCAA TAAGGTACAT GGCAGTATCT GTTTGCTCTC GTATAAAATC ATGCTTTCTC CTGGAATTCA TGTGAGTTTG
CTCCTGTCTG AGTTACGCCA TTCTCTTTTT TTTTGTAGAA CACATTCCTC CTTTGGTACT ACTTTTAGAC TCAAATATAA
GCAAAATAAT TTAATTTTAC ATTGAATAAG ATTGTTAGTT AAGTTCATGA TTTCAAAAAA TAAACAGGTA TATTTTCTAA
ATTACCCCCA TTCATATTTA TTGGAGATGG TGTTGGATTT ATAAAGGTAT TTTTAAGAAA ATAACATTTA ATAAGGTTGA
TTTAGCTGGA ATTTGTTTAT ATTTATGTCC ACTAATCTTT ACCTTTTTCC CCTTATATTT GAGCCCAAAG AGAAGAGCAA
ATTTTTCTTG TTACTGTATA AAATGAAACA GAGGCGGAGG TAATTCCTTG AGTCATTCTG CTTGAAACTC CTCTTTTGGG
AATCAGCAAT CTTTTAATGT ATTCGTGATA CTGTGAGTCG ATTGGTATTT ATAAGAGTAT GCTTAATGCC ACCGTGATAC
ATATATATAT CATGTGTCAC TAATAGTTAC CAGATGGCCT GCATTACTGG ACTTCTTTGA AACAAATAAC CGAAAATAGT
TGCTTTGCTT TACCTGTATC TCACGGATTG TCCAAACACC ATTGTCTCTG TATTTTAGGA ACTGGCACAT AGACAACAAT
TCTACTTCTG GAAGAATTAT AGGAACAATC GGCTAAAACA CATTTTACCA AGATCACTTC CTGAACCTAG TGCCACATCT
GCAGTTCCTG CTCCCCTTTC AACTCCAGCT CAGGCACCTG CATCTGCACT ACCACCAGTA CCTGCTACAA GCGTTGCTGT
CACAGCAACA CCCTCGCAAG CTCCTTCTCC TATGTCATAC GGTATGCCCC CTGGCTCTGG TCTAGCTAAA AATGACATGA
GGAATCCTAC AGTTGACAAT AGAAGGAAGA GAAAGTGAGT GTTTAATACC TCGTGTAAAT TGATTATAAA AATAGTTCGA
TGTGGCTGGA TAAGGAATCA GTATGCTTGA GAGATGGAAG TAGGGACAAT GATAAAGCAA AGTTGTTATG CAAATTAATT
TTGTTGTTAT CTTAAAATAT TAGTTAATAT TCAGTTGGGC CGACAAGTTC TTCTTGAAAA TCCATACGCA GTTAGTGAAA
AATCATTATT TTTATACAAA TAATTTGTGA AATGATTTTC GATTGAAATA ATGGCTTTGA TGGTTTCTAC TTAAATTTCT
TTTGTTATGG TGATCAAAAG GAATGAAAGA CAGTGCCTTG TACTCTTGCT GAGGATTTTG ATTGAGTAGT CC

>Vigan.08G071000.01
AAAAAACGAA CACTTAAATT GGAGGGTGGT TCTAATTCAC TAACGTTGAA TCATCGAATT CATAGATTTG TTGGGTCTGT
TTCTGATTCA AAGGCGAGAG CAAGGTCGTG TATCAGTCCT AACCTCACCA AATTTAGTTT TTGAAACTCC CAGTTGTTCT
TGCAGCTAAG AGAGTACCGA TTCCATGGCC ACTCAAATCG AAAGCGACAA TTCAACCCAT ACTTCTCCAT CATCGCCGAA
GAACACATAC AAAGATCCAG ATGATGGGCG GCAACGGTTT TTGCTTGAAT TGGAGTTTGT TCAGTGCCTT GCCAATCCTA
CCTATATCCA CTATTTGGCT CAGAATCGTT ATTTTGAGGA TGAAGCATTC ATTGGATACT TAAAGTATCT TCAATATTGG
CAGCGCCCTG AATATATTAA ATTTATTATG TATCCTCATT GTCTTTATTT TCTTGAGCTG CTTCAGAATG CAAACTTTCG
CAATGCAATG GCACATCCTA TCAATAAGGA ACTGGCACAT AGACAACAAT TCTACTTCTG GAAGAATTAT AGGAACAATC
GGCTAAAACA CATTTTACCA AGATCACTTC CTGAACCTAG TGCCACATCT GCAGTTCCTG CTCCCCTTTC AACTCCAGCT
CAGGCACCTG CATCTGCACT ACCACCAGTA CCTGCTACAA GCGTTGCTGT CACAGCAACA CCCTCGCAAG CTCCTTCTCC
TATGTCATAC GGTATGCCCC CTGGCTCTGG TCTAGCTAAA AATGACATGA GGAATCCTAC AGTTGACAAT AGAAGGAAGA
GAAAGTGAGT GTTTAATACC TCGTGTAAAT TGATTATAAA AATAGTTCGA TGTGGCTGGA TAAGGAATCA GTATGCTTGA
GAGATGGAAG TAGGGACAAT GATAAAGCAA AGTTGTTATG CAAATTAATT TTGTTGTTAT CTTAAAATAT TAGTTAATAT
TCAGTTGGGC CGACAAGTTC TTCTTGAAAA TCCATACGCA GTTAGTGAAA AATCATTATT TTTATACAAA TAATTTGTGA
AATGATTTTC GATTGAAATA ATGGCTTTGA TGGTTTCTAC TTAAATTTCT TTTGTTATGG TGATCAAAAG GAATGAAAGA
CAGTGCCTTG TACTCTTGCT GAGGATTTTG ATTGAGTAGT CC

>Vigan.08G071000.01
ATGGCCACTC AAATCGAAAG CGACAATTCA ACCCATACTT CTCCATCATC GCCGAAGAAC ACATACAAAG ATCCAGATGA
TGGGCGGCAA CGGTTTTTGC TTGAATTGGA GTTTGTTCAG TGCCTTGCCA ATCCTACCTA TATCCACTAT TTGGCTCAGA
ATCGTTATTT TGAGGATGAA GCATTCATTG GATACTTAAA GTATCTTCAA TATTGGCAGC GCCCTGAATA TATTAAATTT
ATTATGTATC CTCATTGTCT TTATTTTCTT GAGCTGCTTC AGAATGCAAA CTTTCGCAAT GCAATGGCAC ATCCTATCAA
TAAGGAACTG GCACATAGAC AACAATTCTA CTTCTGGAAG AATTATAGGA ACAATCGGCT AAAACACATT TTACCAAGAT
CACTTCCTGA ACCTAGTGCC ACATCTGCAG TTCCTGCTCC CCTTTCAACT CCAGCTCAGG CACCTGCATC TGCACTACCA
CCAGTACCTG CTACAAGCGT TGCTGTCACA GCAACACCCT CGCAAGCTCC TTCTCCTATG TCATACGGTA TGCCCCCTGG
CTCTGGTCTA GCTAAAAATG ACATGAGGAA TCCTACAGTT GACAATAGAA GGAAGAGAAA GTGA

>Vigan.08G071000.01
MATQIESDNS THTSPSSPKN TYKDPDDGRQ RFLLELEFVQ CLANPTYIHY LAQNRYFEDE AFIGYLKYLQ YWQRPEYIKF
IMYPHCLYFL ELLQNANFRN AMAHPINKEL AHRQQFYFWK NYRNNRLKHI LPRSLPEPSA TSAVPAPLST PAQAPASALP
PVPATSVAVT ATPSQAPSPM SYGMPPGSGL AKNDMRNPTV DNRRKRK*