GBrowse Details

Vigan.08G067600.01

Basic Information:
Name: Vigan.08G067600.01
Multiple alignment
Variant Information
Position: Chr08:5283867..5288944 (- strand)
Length: 5078
Functional Information:
Description: Similar to Homocysteine S-methyltransferase. [T2DMY3, Phaseolus vulgaris]
GO: Molecular Function: homocysteine S-methyltransferase activity (GO:0008898)
InterPro: Homocysteine S-methyltransferase (IPR003726)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:72.35,15.32,8.25,9.46,9.04,39.45,18. 48,5.25
Arabidopsis thaliana homolog: AT3G22740.1
Automatic updates:
Name: NM_001255423 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max homocysteine S-methyltransferase 3-like (LOC100811127), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:5283867..5284161 (- strand)
Length: 295
Type: three_prime_UTR
Position: Chr08:5284162..5284320 (- strand)
Length: 159
Type: CDS
Position: Chr08:5284605..5284676 (- strand)
Length: 72
Type: CDS
Position: Chr08:5285122..5285325 (- strand)
Length: 204
Type: CDS
Position: Chr08:5285563..5285692 (- strand)
Length: 130
Type: CDS
Position: Chr08:5285942..5286168 (- strand)
Length: 227
Type: CDS
Position: Chr08:5286251..5286307 (- strand)
Length: 57
Type: CDS
Position: Chr08:5288580..5288759 (- strand)
Length: 180
Type: CDS
Position: Chr08:5288760..5288944 (- strand)
Length: 185
Type: five_prime_UTR

>Vigan.08G067600.01 class=Sequence position=Chr08:5283867..5288944 (- strand)
CGAAAGATGA GAATCAATAA CCTGTTGGGG TTATAACAGT AATTTCCTAA CTCGTGGAAG CAGAATCGCC GTTGGATATA
AGTTGGCACC TGACAACTTC TTTATCATCC AACAGACAAG TGAGACATCA AAACTCTCTT TTGTTGTTCA TCTTCGGTAC
TAAATATTCA CGCGACGTGA GTGTGATGGG GTTCAAAGGG AAGGAAGCGT CGTCGTTTTT TAGGGATTTT CTTGACGAGT
GTGGTGGCTC CGCCGTCATT GACGGTGGCT TTGCCACTGA ATTAGAACGT CACGGTGCAG ACCTCAATGA CCAACTTTGG
AGTGCCAAAT GCCTTGTTAG CTCATCATCA CATCTTGTCC GGAGGGTACT TCTTCCTTTC TTCTCTTCTT TTTCATCATT
AATTACTCAT TTAATTTTTC TATTTGTTCC GCTCGTAGTT CTAAAATTTG CATTGGTAGC TATATGATCT CATCCCAGCA
ACCTTTTTCT CTCAATGCAT GTTTGTTTAT CGGTTACCAC AGCCACTAGA TTTATTTTGT AATCTTGAAT CTTGATTTTA
AGATGTTTCT GCGGGCATAA AGATTATTAT TTCTGTGGTG GTTTTCCCCA GTTGTTCATA AAAGGAGAGG AGCAAATTGT
GTTTTGAAAA TACACGCTAA GAAAATCATT ATTAGAAATA GAAGCTAAGA TAATATTATA CATCAGTGTT TAAAATATTA
AAAATATTTA ATTAAAATAT GAACTATTAT TTCCCTGCCC AAGACCTACT TCAAAATGAA AGAACAAAGA AGATTACCTG
AGAGAAAAAA GACAGTAACG AATTTTCTAT GCACACGTGG CAAACTATAG TGTCAACCTG TTATGGTCTA ATGGGTTCTG
GCCTTGAGTG TAAGGCATTT CAAGAGACAA TAATTCTACC TCTTTTTTTT AATTTTTTGG AACATTTTTT AAAATTTTAA
AAAACTGATT TTATATAAAA AATATTAGAT TTTTTTATTT ATAAAACTTT TAATTTAATT TATTTTTTTA TTAAAGCTTT
TAAATATATA TGCTTTGAAA TCCTTCTTTT ATGCAAGAGA ATTAAGAAAT GATTTTTTTC GATGAAATAT TATCTCTTAC
ACCTTTTCAA TTATCATTTT ATTGGAGCAG TATTTTTTTC TTTTGTAAAA GGTGATGCAT ATTGATGTTA GATACAATAT
TGTGTGCAAA TGGCTAATGA AACTAGATGC TAAGAAACTG TCTAAGCTTT TTTAAGAATT TAGAATAGGA AAACTTTTAT
TTAGATATGA AAAGAATAAG ATCTTTTATG GTTTTTACTG TGTTCCAGTG TGATTTCCAA TATCTATTCA CTTTATTATG
ATTATATATT TCACACTAGT TGTCGTGTTT TTAGAATATA AAGGAATCTT TTTAAGAGAC TTAAATGGTT AATTATACTA
AAAGAATGTT AAATTTTAAT TATATGAAAG GTTTGTTTTA TCTAACCAGA AACGTTTTGG ATGATGATGC AGTAAATTAA
TAAAAAAAAA AGCGTACATA AAAGTTGTGA ATAGAAATTA CACAGTGAAA GGAAAATGAA ACTGTGAAAG CAAAAGAAAC
TTGTCTACCG TGGAATGTCG ACAATTTTAT TTGGTTTGAT CTTGATAAGA TCCACCAGAG TTTCATAAAA TATCATCATT
ACTTTAATAA GAGGGACCTT ATCTCATGGA TGAGACTGAC ATGTTTGCCT ACATGTGATT TCATTACATA CCATCACACG
CTTGTAACCA AACAGTTTCT TCAAAGAAAA TCATTACTAA AAAAGAAAAA TATAAAGCTA CTATTTATAA TATTTATTAA
CTATTTATAT TCTATTAATG ACTTAATAAT TAATGTTATA TTTCTCTTTA ATACTATATT TTTATTTAAT AAAAATTAAA
TTACCATACT ATAATTGTGC AGAAATAATA CGACACATTC ATAAATAAAG AATTTCATTT TTTTTAGTTT TATCTTTTCT
CCTACTTCAG AAAATCTTCA GAAAAGGGAA TAAGAATTGG CATGAACACC CTGATGATAA TTCTAACTTT TTGAAAGGTA
ATTATCTTGA TTTTATATAT AAAAATATAT ATGATATATT CATTTCTATA GTTGTGTTTA TAATTTTTTT TTATTATAAT
TTGATATTAA TATAAAATAT TATACTGTAT TACAAATTCA CAATATTTTT ATTATTTATA TGAAATAAAA AACATATTAA
CAATGTTTCT TCCTTTTGTA TATATTATAT TTATCATTAT TTAAATTCTT TAACATATCA ATTTCACTAC ATAGTAAGTA
TTATTTTTAA ATAACATATA AAATATTTTT TATCATAAGT TATGTAATTT AAATTTAAAT TTTTTTTTCC AACTAAAAAT
ATCACACTCA TCGAAGTGTG TGAAGTAAAC GAAGAAGAAA GAATTTTCCA CGAATTCTTC GTAGTTAAGT GTTCTATACT
TGTTTTTCTT CTGTATTTAC CTTTCCTTTC AAAAGGATCT ACAGTTCCAC ATGAGTTAAA GGAATGGGGG GAAATATAGT
AGAACCGTTA GTTTAGTTTG TATATATTAA TAAATGCTCT TCAATTCAAT ACTTTCAATT GGCCTAACGT GTGACAGGTT
CACCTAGATT ACCTCGAAGC AGGAGCAAAC ATAATATTAA CAGCATCTTA TCAGGTAATT ATCATCTCAA GCTTTTTTTC
ATTCCTACAA TGCAACAGAA CTTTAATTTT GGCTTGTTTC TGGGGTTGGA GTGCAGGCCA CTATTAAAGG TTTTGAGGCT
AAAGGGTTCT CTAGAGAAGA AGGTGTAACT ATGCTCAGAA GGAGTGTAGA GATTGCACGT GAGGCTCGAG AAATTTATCA
TGATAGGTGT ACCAAAGATT CTTCTGACTT TATGCGAAAT GAAAGATATA GGAAACGTCC CATTTTAATT GCTGCTTCTG
TGGGAAGCTA TGGAGCGTAT TTGGCAGATG GCTCTGAATA TGTGTGAGTG AATAAAACCA AGTTCGTCAA AATAGTCACC
AAAGTTGGAC ATTTTTTTAC TTTCAATTGG TATTCTTTGT TTTGTTGAAG GAAAAATGAT TTACCATAAA TTTTAACAAC
TACTGAATAC GTGTTTACTG GTTATATATG AATTAAGATG AGAATTTTCA TTATGGAAGC AAAAACTGCA CTTCAAAATT
AAAGCGATAT ATATGACCGG AGTCTATACT GATTTTCTGT CTCTCTTCAC AGTGGGGACT ATGGTGATTC TGTTACTGTC
CAGACGCTGA AAGATTTTCA TAGGGAAAGA GTAAAGATTC TTGTTGATGC TGGAGCTGAC TTAATAGCCT TTGAAACAAT
TCCAAATAAG CTGGAGGCAC AGGTATTTTA TTAAATCCCT GGTGGTGAAG TAACAATCAA GCAGAGTCAC CTGTTCGTTA
CTTTATTTTT CTATCCTGCA AGACTGCACG TGCAGCAATC TGTAATGGAG TTTGCAAAAT ACCGTGTCAG TTATCATTTA
CTAATATCGT AGAAAGTTGT AGACTACCAT TGCCATTTTG TCTTAGTTTC ACCTTATTTT AAGCAATGCT ATTGATTTTG
TTTACAATTT GATATATAGG CTTATGCTGA ACTTCTCGAC GAAGAAGGCA TAGAAACTCC TGCGTGGTTT TCTTTTAGTT
GCAAGGATGA AAGTAATGTG GTTAGTGGTG ATTCTATCTT TGAGTGTGCT TCAGTAGCTG ATTCATGCAG ACAAGTTGTT
GCAGTTGGAG TTAACTGCAC TGCTCCTAGA TTTATTCATG GATTGATTTC ATCTATTAAG AAGGTGCGAC TTTTGTTTAA
CACTCTGCAC TACGCTATCA AAATGTGCTA CTTTGCTATA TTGTCTTGAT TAACTTGTGA GAAACAACTA ATAGTTGGCC
TTCTAATCCT CGGATTATAT AGTTTTAGTA ATATGCTTCC TGGATTAGTC ACCCATCTAC CATCAGTTTT CGAATTCTTC
AATAAAAACA AGAATGTTAG AGTGTCCTTA GGGCAATGAT AAAAGAAATA CAAGTAGAAA GTAGTTCATT GAAAGGAAAA
CGTTTGCTTT TCAAGTCATC GGACCTACTA TATAGGGTAT AGGAAATGTT TTTTAACTAG TGTCTTAAAG CTACTCATTA
CTAGCAAAAC CATATACACT ATTCTCAATT GAGAAGTGTT AATAGCACTT TTGCATTATT TCCATTAACA GCTCACTAAT
ATGTTTTTTG TAACGCTCCA TTTTAAAGGC TACCAGTAAA CCGGTACTCG TATATCCCAA CAGTGGAGAG ACTTACATTT
CTGAGAGCAA CCAATGGGTG GTGAGTTGCT ACTTCTCTCT TTGCATGTCC CAAAGTTATT CACGAATCTC ATTACTGGCC
GTTATAATTC ACCAAATATA CCATCAAAAT ATGATTTGAA TACAGTTACT GAAAGCAAAT TAACACATTC TGCAATCGTT
TGATACTCTA GTGGTTTAGA CAGAGCTCAT TTTTTTCGAA CACCACAATG TGCTATTTAG TAAGATAAGT CAGATCGGTA
AGAATTCGTA GATGTAATTC TAGTTTATTA TCATCAGATT GATAATCTGA AATTTATCTT GTAGAAATCA AGTGAGTCAG
CAAAGGATGA TTTTGTACCC TACATAGGCA AGTGGCGTGA TGCCGGAGCT TCTCTTTTTG GTGGCTGCTG CAGGACTACT
CCCAACACTA TCAGAGGCAT AGCTGAGGCA ATATATGGGA AAGTTCAAGA CAAATGTATG TAACTGATGA AGTATCTTTT
TATCTGTGTA ATTAAAAAAA CTATAATAAT CCAAACGAGA TGTCTAACTT TCTGCCTTAA GCTTCCATTT TCTTTCTTGG
TATGCACGCA TTTTTGCACA AGGATACATA GCATAGAGAA CTTAGGCAGG AACAAGTGAT CTCTAATATC TGATTAGTGA
CTGATTTAAA AGGGAAGAAT GGTTGTATAA AAGTTGATAA AATCACGAAC AGTATTTCCT GAGGCGTGTA GATTCATTGT
CTTTAAAGAC TTATTCGCGG TGTATTGCGC AAGTCCCC

>Vigan.08G067600.01
CGAAAGATGA GAATCAATAA CCTGTTGGGG TTATAACAGT AATTTCCTAA CTCGTGGAAG CAGAATCGCC GTTGGATATA
AGTTGGCACC TGACAACTTC TTTATCATCC AACAGACAAG TGAGACATCA AAACTCTCTT TTGTTGTTCA TCTTCGGTAC
TAAATATTCA CGCGACGTGA GTGTGATGGG GTTCAAAGGG AAGGAAGCGT CGTCGTTTTT TAGGGATTTT CTTGACGAGT
GTGGTGGCTC CGCCGTCATT GACGGTGGCT TTGCCACTGA ATTAGAACGT CACGGTGCAG ACCTCAATGA CCAACTTTGG
AGTGCCAAAT GCCTTGTTAG CTCATCATCA CATCTTGTCC GGAGGGTTCA CCTAGATTAC CTCGAAGCAG GAGCAAACAT
AATATTAACA GCATCTTATC AGGCCACTAT TAAAGGTTTT GAGGCTAAAG GGTTCTCTAG AGAAGAAGGT GTAACTATGC
TCAGAAGGAG TGTAGAGATT GCACGTGAGG CTCGAGAAAT TTATCATGAT AGGTGTACCA AAGATTCTTC TGACTTTATG
CGAAATGAAA GATATAGGAA ACGTCCCATT TTAATTGCTG CTTCTGTGGG AAGCTATGGA GCGTATTTGG CAGATGGCTC
TGAATATGTT GGGGACTATG GTGATTCTGT TACTGTCCAG ACGCTGAAAG ATTTTCATAG GGAAAGAGTA AAGATTCTTG
TTGATGCTGG AGCTGACTTA ATAGCCTTTG AAACAATTCC AAATAAGCTG GAGGCACAGG CTTATGCTGA ACTTCTCGAC
GAAGAAGGCA TAGAAACTCC TGCGTGGTTT TCTTTTAGTT GCAAGGATGA AAGTAATGTG GTTAGTGGTG ATTCTATCTT
TGAGTGTGCT TCAGTAGCTG ATTCATGCAG ACAAGTTGTT GCAGTTGGAG TTAACTGCAC TGCTCCTAGA TTTATTCATG
GATTGATTTC ATCTATTAAG AAGGCTACCA GTAAACCGGT ACTCGTATAT CCCAACAGTG GAGAGACTTA CATTTCTGAG
AGCAACCAAT GGGTGAAATC AAGTGAGTCA GCAAAGGATG ATTTTGTACC CTACATAGGC AAGTGGCGTG ATGCCGGAGC
TTCTCTTTTT GGTGGCTGCT GCAGGACTAC TCCCAACACT ATCAGAGGCA TAGCTGAGGC AATATATGGG AAAGTTCAAG
ACAAATGTAT GTAACTGATG AAGTATCTTT TTATCTGTGT AATTAAAAAA ACTATAATAA TCCAAACGAG ATGTCTAACT
TTCTGCCTTA AGCTTCCATT TTCTTTCTTG GTATGCACGC ATTTTTGCAC AAGGATACAT AGCATAGAGA ACTTAGGCAG
GAACAAGTGA TCTCTAATAT CTGATTAGTG ACTGATTTAA AAGGGAAGAA TGGTTGTATA AAAGTTGATA AAATCACGAA
CAGTATTTCC TGAGGCGTGT AGATTCATTG TCTTTAAAGA CTTATTCGCG GTGTATTGCG CAAGTCCCC

>Vigan.08G067600.01
ATGGGGTTCA AAGGGAAGGA AGCGTCGTCG TTTTTTAGGG ATTTTCTTGA CGAGTGTGGT GGCTCCGCCG TCATTGACGG
TGGCTTTGCC ACTGAATTAG AACGTCACGG TGCAGACCTC AATGACCAAC TTTGGAGTGC CAAATGCCTT GTTAGCTCAT
CATCACATCT TGTCCGGAGG GTTCACCTAG ATTACCTCGA AGCAGGAGCA AACATAATAT TAACAGCATC TTATCAGGCC
ACTATTAAAG GTTTTGAGGC TAAAGGGTTC TCTAGAGAAG AAGGTGTAAC TATGCTCAGA AGGAGTGTAG AGATTGCACG
TGAGGCTCGA GAAATTTATC ATGATAGGTG TACCAAAGAT TCTTCTGACT TTATGCGAAA TGAAAGATAT AGGAAACGTC
CCATTTTAAT TGCTGCTTCT GTGGGAAGCT ATGGAGCGTA TTTGGCAGAT GGCTCTGAAT ATGTTGGGGA CTATGGTGAT
TCTGTTACTG TCCAGACGCT GAAAGATTTT CATAGGGAAA GAGTAAAGAT TCTTGTTGAT GCTGGAGCTG ACTTAATAGC
CTTTGAAACA ATTCCAAATA AGCTGGAGGC ACAGGCTTAT GCTGAACTTC TCGACGAAGA AGGCATAGAA ACTCCTGCGT
GGTTTTCTTT TAGTTGCAAG GATGAAAGTA ATGTGGTTAG TGGTGATTCT ATCTTTGAGT GTGCTTCAGT AGCTGATTCA
TGCAGACAAG TTGTTGCAGT TGGAGTTAAC TGCACTGCTC CTAGATTTAT TCATGGATTG ATTTCATCTA TTAAGAAGGC
TACCAGTAAA CCGGTACTCG TATATCCCAA CAGTGGAGAG ACTTACATTT CTGAGAGCAA CCAATGGGTG AAATCAAGTG
AGTCAGCAAA GGATGATTTT GTACCCTACA TAGGCAAGTG GCGTGATGCC GGAGCTTCTC TTTTTGGTGG CTGCTGCAGG
ACTACTCCCA ACACTATCAG AGGCATAGCT GAGGCAATAT ATGGGAAAGT TCAAGACAAA TGTATGTAA

>Vigan.08G067600.01
MGFKGKEASS FFRDFLDECG GSAVIDGGFA TELERHGADL NDQLWSAKCL VSSSSHLVRR VHLDYLEAGA NIILTASYQA
TIKGFEAKGF SREEGVTMLR RSVEIAREAR EIYHDRCTKD SSDFMRNERY RKRPILIAAS VGSYGAYLAD GSEYVGDYGD
SVTVQTLKDF HRERVKILVD AGADLIAFET IPNKLEAQAY AELLDEEGIE TPAWFSFSCK DESNVVSGDS IFECASVADS
CRQVVAVGVN CTAPRFIHGL ISSIKKATSK PVLVYPNSGE TYISESNQWV KSSESAKDDF VPYIGKWRDA GASLFGGCCR
TTPNTIRGIA EAIYGKVQDK CM*