GBrowse Details

Vigan.08G053100.01

Basic Information:
Name: Vigan.08G053100.01
Multiple alignment
Variant Information
Position: Chr08:4128152..4132160 (- strand)
Length: 4009
Functional Information:
Description: Similar to mRNA, clone: RTFL01-12-E13. [E4MWQ8, Thellungiella halophila]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:105.81,47.51,22.52,114.24,3.68,30.92 ,7.91,18.20
Arabidopsis thaliana homolog: AT1G50020.1
Automatic updates:
Name: NM_001249204 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305745 (LOC100305745), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:4128152..4128388 (- strand)
Length: 237
Type: three_prime_UTR
Position: Chr08:4128389..4128511 (- strand)
Length: 123
Type: CDS
Position: Chr08:4129133..4129240 (- strand)
Length: 108
Type: CDS
Position: Chr08:4131025..4131254 (- strand)
Length: 230
Type: CDS
Position: Chr08:4131689..4131881 (- strand)
Length: 193
Type: CDS
Position: Chr08:4131882..4132160 (- strand)
Length: 279
Type: five_prime_UTR

>Vigan.08G053100.01 class=Sequence position=Chr08:4128152..4132160 (- strand)
AATCTATTCG CGAAACAAAA ATCATGATTA TTTTGTCCAT GTTGTCAGCA GCCTCTGACC GCAAATCTAC GACTGGTTAC
TTCTTTCTCA CCACAAACGC AGACCCACCC CCCGCTCACA TTAGCCATCC TTAGTTCTAT CACTCTAAAC TGCGCTTGCC
GGTGCAAGCT CCACTCTACT TCTTACTTCC TCTAGAAGAA GCCTTTTCAC GTCTCTCTGC CACCAAACCC CTTTCATTCA
TTTGGGTTTG TCTGTCTTTT CAAATTTTGT GCCGTAGTTA TGGCTTCTCT GAGACCTACC CTCTCTCAAC TTTCCCTTTC
GCAATATAAT TTTCCCAGAA AATCTACGTG GAACAATCAC CTACCATGCT ATTTCCACAA AGGGATCGCA AAGCTGCATA
CTTTCACCTC TTCTAAGTCT TCCGCTTTCA GGGTCTGCTG TAGTTCCCAA GAGTCCAATA GCCAAAACAA TGGCAAGTTT
GATTTTGTTT TTTAAATTTT ATTTTCAAGT CTCGTTTAAT GATTGTTATT CGAAATTGTT ATAATTCTAG TTTTAGTGAG
AAATAATACA GAAGTTTACT AAAATTTCTT AGCTCTATTT GTTTGACTAC TTGTATTTGT GATTTCCACT CTCTTTCCTT
GGCAGATTAC TAAAATAAAA TTTAGATCTT TTTTCCCTTT TATGTATATT CATCTGATGT AGGATGAGTT CTTGTGCTTT
CACCATGTCT GTGTGGCATT TTATCTGTTG GTTATCAAGA AAAACTGTTT GTTATTACGT TTTGGCCAGA CAAGTAGATT
TTATAATGAA GGGGTTCGGA TTATAATCTA CAACTGGTTA AAGAGAACAT CAAAGTGACT AACTTTACCT TTTTGTCTCA
TCATCCTGCT TCTGTTGTGT TTTCAGGTGA AGAGCCTCCG GAGTCATTAT TTATGAAGGA ATTGAAGAGG AGAGGTATGA
CCCCTACATC ATTGCTTGAT GATTACAAAC AAAGCAACTA TGAACTTGAT GAAGAGGTGT TCGTGAATGA GGAAGATAGA
GGTTTCCCCA AAAGAAAATC TGTCTCAACC AATGTTGAGA GGAGTCTAGA AAATCAGAGA GAACGATCTA TGGCCCTGAA
CAGTGAAGGT CTTGAGGTTG ATTCATTGTT AACATTCCTT TTCCTTAAAC AATTTATAAA CAAGCAACTA TGTTGTTTCT
ATGGTTTTGT TGGCAGTAGT TTGTCTTTGT TATCTGGTGT TGAACAAAAA AATACTAATT AAAATTTTTA TATTGGTGAG
AAGCAAGAAA GTGGAAATGG GGAGGGAGGA CAAAGAAAAC ACAGGAAGGA TGAACATTTC AAGAAGTACT GAAATTCAGC
TATGAATAAT GAATGTCAAC TTACAACACT GGTTTCAACC TTATTCCCAA AACATTCTAT ACCTTTTAAT CTTCTCTTGA
TGAACAATTA TATAAATAGT AAGTCCAATT ATATAAACTT TTGGCTTTGT TACCCAAATC AACAAACATG ATCTGCTGAT
AAATTTTGAA CACAGTGCCT TTTGAGACAT CACATGTTTG GAAATTAAAA TTCAAATGGC TTCTGCAGAG TGCATAGAAT
TAGTAAGAAT TTTAAGTAAT TTTCAAAATA AGATCGAATC TTATCAGTTT TGCAACAAAT AACTCTCTTA AAGATGTAAG
ATTTCATAGC TAAATTCTAA CGGCATGATT TATTATTATT ATTATTATTT AAAGACTTAA GAAAATAATA GGTTGTTAAA
GTTGAGTTTT TCATTTCTGA ATCTTCATGT AGAAATACAG CTTCCATACT TCTTACTATG AATTTCAATG ATTGCATTGG
ACTAATGGAA TGTTTGCAGA GCTTATTTGT ACTTATGTTA TGATTCTGAA TACTGTAAGT ATTTCTAGTA AGAGATGCAT
TAGATACAAT TATTCTAAAC ATACATAAGA TATAATGTGT AAGATTAATA TACAGATATT TAAAAAAATT ATAAAACATA
ATAATTAATA TTCTGCAAAT CCAAATTAAA ATGTTTTTAT GCATTACTAA AACAAAATAG AATTTATTAA CCATTTTCAT
CATGAATTAT TTCTTTATCT GTTGACAAAT AGAAATAGTA TCAGTCTTAT TTCTTTCTTG AAATCATTTG TGAAGAGAAT
AATTTCCATT TTTGCCCTAC CAATGGACTA TGCTTCTACT TGTATACTGT ACATTCTTCA ATGTTTCGTA TGTAGCCGTA
TTCGAGTTTT ATAGTTCTTC TAAAGTCTTA TATACTTTAT CGGTGAAATA TTTAAGAATA TGATATACTT ACCAGATATG
GATGTGGAAA ATGAATTAAA GTATAGTGGT TCATGACTTG TGGCTTTCTC ATAAGTTCTT TTTCACTTAT TTTAATTAGC
TTTGTAGAAA AGCTTATCAA AATAATCTGT TTTTAGCTTA TTCTAGTACG TTTCACAATG AAGCTTAAAA ATAAACTCTC
ATAGTAAAAT CTTATTGAAC AAGTATTTAT TTAAATTGCT TAACTAAATA CTCCCTAAAT TTGAGTGTGA AATGGGCATT
AGTAACTTAA AAAGAGCTTT CATGAGTACA CTGTTCTAGC ATTTATAACA GAATATGTAT TAAAAAATTA ACATGATGAT
CTCCATAATA TGCAGAGTTC TTCTGTTAGA CCATGTTAGG TCAGTTTAGA TATTGACGCA CTTTCTTTTG CATCGAATAT
TACTACATGA GAAGGTAGCG ATTGCTGCAC TGCGTAAATT ATGTGGAGTC TTTTGGCCGA CAGATATGAA CAAACAAATC
TATATATCCT ATTAGAATGC ATCTAAATCA GAATTAATAA TGTTGTATTG AAGTGAGCTT TCTTGAATTT CCTTTTGGGG
TGAAATCCCG TGAAATCACT TGTGTATTTA TCCATTTCAG GGCTTAATAC CTCGTGCTAA ACTTCTCTTG ACGATTGGAG
GAACATTCTT CTTGGGATTT GGACCGTTGA TCCTCATAAT TGTTGCAACT TTTTCTGCTC TATACTTCGT AAGTACTTGG
CCTGACAACA GATGTGATGA GTGCATTTTT TTATATATCA CTTCATCAAA TTGTATGTAT ATCAGTATCA CGGCCATCTT
ATCTGTACAA TGACAACATG ATTTTTCTTT CATCTATTAT CTTGTTTGTA ATTGAAGCGA ATAACGATTT GACGGACAAA
AGAACATTGC CTAGTATATT GGCAAACTAT GTCAATTTAG CACCTATAAC TGTAAGCTAT ATTCTTAACT TCAATGTAAA
TAATTATAAT TCATAGTAGA AACAGCCAAT GATGTAACTG TCATATCTAT GAATTTTGTC TGGTTAACTG AGAAAACTCC
CAACCTGTGA GTACAACTGT TTTTGTACAT TCAATTATTG GGAGCGGCCA CTTCATTTCA TAATGCTGAA GCTTTTGATG
TTCGACACAT CTATCTTCTA GTCTATCCTG TGGTTTTATA TCTGATATTA GGCAACAAAG CTGAATACAA CATGAATTCT
TAGCTTGAAA TGATTTATGT GTTCTTTTTG GCATTTTCTT CTTACACTTC AGGCATCACT TTATAGTGGA TAAATAGGAG
CTATGCATTT GAGATGGCTT TGAAATTGAT CCTTACTTTA CTGTTGCAGT ATTTTGGACC AACATTTGTC CATGATGCAA
GCAAGATGGC CGTATCACCT CCACAATATG TGGACCCTTA CGCACTCCTA GAAGATGAAA GGATATCACA GATAGCACCC
CGTCTAAACT AAAGGCAAGA CTACACATAC CTCTTAGGAA TCTAGTTGCA TATATCAAAT TTCTGTTTTC TTAAGCCTCT
GTTGATTTAG TGCCATTGTA AAATATCATC CAGGATCAAC TTGCTGTTAT CTATTTTCCT TTCATCATTG ACTCAATTCT
TTACATCCGC CTTTTCCATT TTACATACAT CCTATGAATA ATTAAAACTA AATAAAAGCT CCATCAGAAG AATCAAGCAT
TGCGTATAA

>Vigan.08G053100.01
AATCTATTCG CGAAACAAAA ATCATGATTA TTTTGTCCAT GTTGTCAGCA GCCTCTGACC GCAAATCTAC GACTGGTTAC
TTCTTTCTCA CCACAAACGC AGACCCACCC CCCGCTCACA TTAGCCATCC TTAGTTCTAT CACTCTAAAC TGCGCTTGCC
GGTGCAAGCT CCACTCTACT TCTTACTTCC TCTAGAAGAA GCCTTTTCAC GTCTCTCTGC CACCAAACCC CTTTCATTCA
TTTGGGTTTG TCTGTCTTTT CAAATTTTGT GCCGTAGTTA TGGCTTCTCT GAGACCTACC CTCTCTCAAC TTTCCCTTTC
GCAATATAAT TTTCCCAGAA AATCTACGTG GAACAATCAC CTACCATGCT ATTTCCACAA AGGGATCGCA AAGCTGCATA
CTTTCACCTC TTCTAAGTCT TCCGCTTTCA GGGTCTGCTG TAGTTCCCAA GAGTCCAATA GCCAAAACAA TGGTGAAGAG
CCTCCGGAGT CATTATTTAT GAAGGAATTG AAGAGGAGAG GTATGACCCC TACATCATTG CTTGATGATT ACAAACAAAG
CAACTATGAA CTTGATGAAG AGGTGTTCGT GAATGAGGAA GATAGAGGTT TCCCCAAAAG AAAATCTGTC TCAACCAATG
TTGAGAGGAG TCTAGAAAAT CAGAGAGAAC GATCTATGGC CCTGAACAGT GAAGGTCTTG AGGGCTTAAT ACCTCGTGCT
AAACTTCTCT TGACGATTGG AGGAACATTC TTCTTGGGAT TTGGACCGTT GATCCTCATA ATTGTTGCAA CTTTTTCTGC
TCTATACTTC TATTTTGGAC CAACATTTGT CCATGATGCA AGCAAGATGG CCGTATCACC TCCACAATAT GTGGACCCTT
ACGCACTCCT AGAAGATGAA AGGATATCAC AGATAGCACC CCGTCTAAAC TAAAGGCAAG ACTACACATA CCTCTTAGGA
ATCTAGTTGC ATATATCAAA TTTCTGTTTT CTTAAGCCTC TGTTGATTTA GTGCCATTGT AAAATATCAT CCAGGATCAA
CTTGCTGTTA TCTATTTTCC TTTCATCATT GACTCAATTC TTTACATCCG CCTTTTCCAT TTTACATACA TCCTATGAAT
AATTAAAACT AAATAAAAGC TCCATCAGAA GAATCAAGCA TTGCGTATAA 

>Vigan.08G053100.01
ATGGCTTCTC TGAGACCTAC CCTCTCTCAA CTTTCCCTTT CGCAATATAA TTTTCCCAGA AAATCTACGT GGAACAATCA
CCTACCATGC TATTTCCACA AAGGGATCGC AAAGCTGCAT ACTTTCACCT CTTCTAAGTC TTCCGCTTTC AGGGTCTGCT
GTAGTTCCCA AGAGTCCAAT AGCCAAAACA ATGGTGAAGA GCCTCCGGAG TCATTATTTA TGAAGGAATT GAAGAGGAGA
GGTATGACCC CTACATCATT GCTTGATGAT TACAAACAAA GCAACTATGA ACTTGATGAA GAGGTGTTCG TGAATGAGGA
AGATAGAGGT TTCCCCAAAA GAAAATCTGT CTCAACCAAT GTTGAGAGGA GTCTAGAAAA TCAGAGAGAA CGATCTATGG
CCCTGAACAG TGAAGGTCTT GAGGGCTTAA TACCTCGTGC TAAACTTCTC TTGACGATTG GAGGAACATT CTTCTTGGGA
TTTGGACCGT TGATCCTCAT AATTGTTGCA ACTTTTTCTG CTCTATACTT CTATTTTGGA CCAACATTTG TCCATGATGC
AAGCAAGATG GCCGTATCAC CTCCACAATA TGTGGACCCT TACGCACTCC TAGAAGATGA AAGGATATCA CAGATAGCAC
CCCGTCTAAA CTAA

>Vigan.08G053100.01
MASLRPTLSQ LSLSQYNFPR KSTWNNHLPC YFHKGIAKLH TFTSSKSSAF RVCCSSQESN SQNNGEEPPE SLFMKELKRR
GMTPTSLLDD YKQSNYELDE EVFVNEEDRG FPKRKSVSTN VERSLENQRE RSMALNSEGL EGLIPRAKLL LTIGGTFFLG
FGPLILIIVA TFSALYFYFG PTFVHDASKM AVSPPQYVDP YALLEDERIS QIAPRLN*