GBrowse Details

Vigan.08G045500.01

Basic Information:
Name: Vigan.08G045500.01
Multiple alignment
Variant Information
Position: Chr08:3584206..3587147 (- strand)
Length: 2942
Functional Information:
Description: Similar to Uncharacterized protein. [I1NFX4, Glycine max]
InterPro: Protein of unknown function DUF3611 (IPR022051)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:49.85,41.24,44.83,39.95,59.17,73.63, 27.01,29.32
Arabidopsis thaliana homolog: AT2G15290.1
Automatic updates:
Name: NM_001254971 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100775427 (LOC100775427), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:3584206..3584832 (- strand)
Length: 627
Type: three_prime_UTR
Position: Chr08:3584833..3584946 (- strand)
Length: 114
Type: CDS
Position: Chr08:3586105..3586308 (- strand)
Length: 204
Type: CDS
Position: Chr08:3586471..3586728 (- strand)
Length: 258
Type: CDS
Position: Chr08:3586814..3587089 (- strand)
Length: 276
Type: CDS
Position: Chr08:3587090..3587147 (- strand)
Length: 58
Type: five_prime_UTR

>Vigan.08G045500.01 class=Sequence position=Chr08:3584206..3587147 (- strand)
AAGGAAAATA CCATAAAAGG CGAACGGAGA ATCTCCTCTT TCTTCATCAC CAGCAGCAAT GCAAACGCTA CTACTGCCGG
CAACACGAGC CGGCAGCTTC ACGGCGGTTC TACTGTCAGC CTCTTCTGCC GCCGCCCCTC GTCTCTCCCA ACCATTTCTG
CCGTCGAATC CCCTGCCCTC ACTCCCTCTC AATTTGTCTC GGTCGTCTTC CTCTTTCGGT TCCTCCTTCT CTCGTCAACC
ATGGAAGCTT CCCTTCACCG CAAGCGCTTC TTCTCAAGTG TCTACGGCTT TCACTGCTTC GAATGACGAA TTAGAGAAGG
CAAAACTCGA ACAGGTACTG TCCAGTGGTT TTGAACTATT CAATTGCGAA CTCGAATTGC ATTTCTAGGG TTCCTGAAAA
TGGAATTGTT GTGGTGCAGG TGGCGAAGAG ATTGGAGAAG ACGGCGAGGT ATTTCAAGCG TTTGGGTAAC TTAGGGTTTT
GGGGTCAGTT AGTGTGCACT GTCGTGGCTG CCGTCATACT GTCATTCTCC GTTGTCATTA CCGGAAAAGT GACATCTCCT
GCCACATTTT ATGCCACGGC GGGTGGAATA GTGGCGGCCT TCATTTCTGT GTTTTGGTCC TTTGGTTACA TTCGCCTTTC
GGAGAAGCTT CGAAAAACTG CAAATGACCC CGCCAAGGTG TGTGTTTGTG TGCATTTTGA ATTTGTTTAG GGTTCTGAAC
GAGGTTAATT ATTGTAAGAT GGAACTGCAT TTAGTTATAT TAATGTGAAA TCATTGTATG TATCTATTAA GTGAATTTTG
ATGAGGTATC TTAGCTTTCC CTTTTACTTG TGTTTTCAGG CACCCCCTCG TGCTGATGTA GTGAAAGGCT TGAAAAATGG
TATAGTAATG AACCTGTTGG GGATGGGCGC TGCTATTCTT GGGATGCAAG CCACGGTTGG CTTGTTGGTT GCTAAGGCTC
TCACTACCTC TGCAAACCCG TATTATCAGG GAATTTCCCC TGGTAACAGC CCAGTTCTCG CATTGGATGT ATTTTTGGTG
CAGGTATGTC GTTTAAGTTT CCCTGCTGCA GATTAAATTT GTCTATTTTC TTGTAGGTTT GTGCTGGAGC CAGATTCTTT
TATTTTAGAC CAGCTCTTGT TTTTATCAGT GTTATTCTCA CTAGTTTCCC ATTTGACCTG TATAGTTGTC AGTTATGTTA
TTAACAAGCC TCTCATTCAG ATGAAAGCCG GGTCTTTATC TTCTTATAGC CCCCGTTATG AACATCTTTT TCCCATATGA
GCAAATTCCT CTATCTGTTT GGTTCTTTGT CTTCTGCCAT TGCCGATCTT CACCATTTTA ATGATAAATA TATAAATAAT
GAATTGGGGA CATGTCTTGA CTCCTGTTAT TGGAGGTTGA AGTTTGGATT AGTGGAGCTT AACTTACAGT AGGATTGAAA
ACAGAAAAAA AACCCTCCCA GAGTTTTAAA GTGTTGGTAG TATGTTGAGA GTGTATGAAC TGAATGAGTC CCCTAAAGTG
AGAGTGCATT CAGGAGGATA AGCACAGAGT TATATAGATT GTGATAAAGT ATACGCATAT GCATTTCAAA CTATATAATG
GTTAAATTGT TTACTCCCTC ATATTAACTG CTCTCCCCTT TCACCTATTA ATTGCGCCCG TTATTTTAGA GAAGACAAAT
TTGATATATG GCAATTGATT TCTGAAAATA GGGAAGGCTG TTCTGTTGTT TCGTATATAT CTTTCCCCAT CAAGTTGATG
TGTTTAAATT ACAATTACAA AATGGTGATT GCTGGTAAAA CACACTTTCT AATACACTTT TTCACAATTT GGTAAAATTT
ATGAAGTTCT ACCAAACAAT TAATGAGATT GATTAAATTG GGGGTAGACT CCGCATTTTT TAGTGGGTCC CATTTGAATT
TTATCGCTTA GTGAAGGCTG TATTCGAAAG AGTGTAATAG CGAATGTTTT AGTATTTACT GTTTTCAAGA TTTACTTGTG
TACTTGTGTC ATTTTGTAAT AATTGGTCAT AGGGAAAATA TTTCCATACA AACAAAACTC AACAAAACTC AATGTAAGCA
ACATTTTGAT TGTATTGAGT ACAATATATG GTCTTCGGCA GTAGCGCAAT GTTTGACTTC TCGGTGCTAC TCATCAAGAA
ACGAGTAACA CTTTTAAACA TTTATCATCT TTGTTTTGCA GGCATCAGCG AACACTATTC TCTCACATTT CCTTGGGCTT
GTTTTCTCTC TGGAGTTGTT GAGATCAGTC ACGTTACCAC CTTCAGAAGC GACTCCATTT CCCAAGTTTG CATAACATGT
ACCAAGAGAC TAGTATGATG AAATCACACC CAAAAATTAT CCCCCGTTTC TGGTGGTTGT TTGCGTAATG AATTACGTTC
CTCTTTTTTG ATACAGCATT TTAAGGCCCT CTTCCTAGGC AATTCCCGAA ATTGTGTATT TCCAGTTTTA AAAGAACCCG
TGCAAATGTT GCTAATAAAC ATGACAATGG CTCAACAAAT GGAGATCCTT GGGCAGATTA TTATAATGGA GGGAGTCGTT
TTGGAGTCAT CATCACTCAT AGCTTGTCTA CGGTAAGATC CAATCGGAGA AATTTCGAAA ATCAACTCTG AAATAATTGT
ATATTAGACC TGTCATGGAA TCTGCGGGTT TTGATCCTTT TCAAAATACT CGCAAGCTTG TTTGACAGTA TGATGCTATG
TTTTTGTCCT TGTTAGAGTT ACTTTTTACC CCTTATTTTG TACTTGTATC ACTCCCTATT ATGCATCAGA ATCTTTTACA
GTTTTGGTTC ATGCCCAGGA TTCACATAAT AGTAGGTTTC GGTTTATTAT GCATCGGATT CACATAATAT AGGTTTTGGT
TTATATTATG CATTGGAAAA AAGACCTTAA TTATAGTCAT GCTAAAAATT GCGAGTAGCA AG

>Vigan.08G045500.01
AAGGAAAATA CCATAAAAGG CGAACGGAGA ATCTCCTCTT TCTTCATCAC CAGCAGCAAT GCAAACGCTA CTACTGCCGG
CAACACGAGC CGGCAGCTTC ACGGCGGTTC TACTGTCAGC CTCTTCTGCC GCCGCCCCTC GTCTCTCCCA ACCATTTCTG
CCGTCGAATC CCCTGCCCTC ACTCCCTCTC AATTTGTCTC GGTCGTCTTC CTCTTTCGGT TCCTCCTTCT CTCGTCAACC
ATGGAAGCTT CCCTTCACCG CAAGCGCTTC TTCTCAAGTG TCTACGGCTT TCACTGCTTC GAATGACGAA TTAGAGAAGG
CAAAACTCGA ACAGGTGGCG AAGAGATTGG AGAAGACGGC GAGGTATTTC AAGCGTTTGG GTAACTTAGG GTTTTGGGGT
CAGTTAGTGT GCACTGTCGT GGCTGCCGTC ATACTGTCAT TCTCCGTTGT CATTACCGGA AAAGTGACAT CTCCTGCCAC
ATTTTATGCC ACGGCGGGTG GAATAGTGGC GGCCTTCATT TCTGTGTTTT GGTCCTTTGG TTACATTCGC CTTTCGGAGA
AGCTTCGAAA AACTGCAAAT GACCCCGCCA AGGCACCCCC TCGTGCTGAT GTAGTGAAAG GCTTGAAAAA TGGTATAGTA
ATGAACCTGT TGGGGATGGG CGCTGCTATT CTTGGGATGC AAGCCACGGT TGGCTTGTTG GTTGCTAAGG CTCTCACTAC
CTCTGCAAAC CCGTATTATC AGGGAATTTC CCCTGGTAAC AGCCCAGTTC TCGCATTGGA TGTATTTTTG GTGCAGGCAT
CAGCGAACAC TATTCTCTCA CATTTCCTTG GGCTTGTTTT CTCTCTGGAG TTGTTGAGAT CAGTCACGTT ACCACCTTCA
GAAGCGACTC CATTTCCCAA GTTTGCATAA CATGTACCAA GAGACTAGTA TGATGAAATC ACACCCAAAA ATTATCCCCC
GTTTCTGGTG GTTGTTTGCG TAATGAATTA CGTTCCTCTT TTTTGATACA GCATTTTAAG GCCCTCTTCC TAGGCAATTC
CCGAAATTGT GTATTTCCAG TTTTAAAAGA ACCCGTGCAA ATGTTGCTAA TAAACATGAC AATGGCTCAA CAAATGGAGA
TCCTTGGGCA GATTATTATA ATGGAGGGAG TCGTTTTGGA GTCATCATCA CTCATAGCTT GTCTACGGTA AGATCCAATC
GGAGAAATTT CGAAAATCAA CTCTGAAATA ATTGTATATT AGACCTGTCA TGGAATCTGC GGGTTTTGAT CCTTTTCAAA
ATACTCGCAA GCTTGTTTGA CAGTATGATG CTATGTTTTT GTCCTTGTTA GAGTTACTTT TTACCCCTTA TTTTGTACTT
GTATCACTCC CTATTATGCA TCAGAATCTT TTACAGTTTT GGTTCATGCC CAGGATTCAC ATAATAGTAG GTTTCGGTTT
ATTATGCATC GGATTCACAT AATATAGGTT TTGGTTTATA TTATGCATTG GAAAAAAGAC CTTAATTATA GTCATGCTAA
AAATTGCGAG TAGCAAG

>Vigan.08G045500.01
ATGCAAACGC TACTACTGCC GGCAACACGA GCCGGCAGCT TCACGGCGGT TCTACTGTCA GCCTCTTCTG CCGCCGCCCC
TCGTCTCTCC CAACCATTTC TGCCGTCGAA TCCCCTGCCC TCACTCCCTC TCAATTTGTC TCGGTCGTCT TCCTCTTTCG
GTTCCTCCTT CTCTCGTCAA CCATGGAAGC TTCCCTTCAC CGCAAGCGCT TCTTCTCAAG TGTCTACGGC TTTCACTGCT
TCGAATGACG AATTAGAGAA GGCAAAACTC GAACAGGTGG CGAAGAGATT GGAGAAGACG GCGAGGTATT TCAAGCGTTT
GGGTAACTTA GGGTTTTGGG GTCAGTTAGT GTGCACTGTC GTGGCTGCCG TCATACTGTC ATTCTCCGTT GTCATTACCG
GAAAAGTGAC ATCTCCTGCC ACATTTTATG CCACGGCGGG TGGAATAGTG GCGGCCTTCA TTTCTGTGTT TTGGTCCTTT
GGTTACATTC GCCTTTCGGA GAAGCTTCGA AAAACTGCAA ATGACCCCGC CAAGGCACCC CCTCGTGCTG ATGTAGTGAA
AGGCTTGAAA AATGGTATAG TAATGAACCT GTTGGGGATG GGCGCTGCTA TTCTTGGGAT GCAAGCCACG GTTGGCTTGT
TGGTTGCTAA GGCTCTCACT ACCTCTGCAA ACCCGTATTA TCAGGGAATT TCCCCTGGTA ACAGCCCAGT TCTCGCATTG
GATGTATTTT TGGTGCAGGC ATCAGCGAAC ACTATTCTCT CACATTTCCT TGGGCTTGTT TTCTCTCTGG AGTTGTTGAG
ATCAGTCACG TTACCACCTT CAGAAGCGAC TCCATTTCCC AAGTTTGCAT AA

>Vigan.08G045500.01
MQTLLLPATR AGSFTAVLLS ASSAAAPRLS QPFLPSNPLP SLPLNLSRSS SSFGSSFSRQ PWKLPFTASA SSQVSTAFTA
SNDELEKAKL EQVAKRLEKT ARYFKRLGNL GFWGQLVCTV VAAVILSFSV VITGKVTSPA TFYATAGGIV AAFISVFWSF
GYIRLSEKLR KTANDPAKAP PRADVVKGLK NGIVMNLLGM GAAILGMQAT VGLLVAKALT TSANPYYQGI SPGNSPVLAL
DVFLVQASAN TILSHFLGLV FSLELLRSVT LPPSEATPFP KFA*