GBrowse Details

Vigan.08G042800.01

Basic Information:
Name: Vigan.08G042800.01
Multiple alignment
Variant Information
Position: Chr08:3423684..3426587 (+ strand)
Length: 2904
Functional Information:
Description: Similar to Cyclin d3. [Q6T2Z6, Glycine max]
GO: Cellular Component: nucleus (GO:0005634)
InterPro: Cyclin, C-terminal domain (IPR004367)
Cyclin, N-terminal (IPR006671)
Cyclin-like (IPR013763)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.04,0.95,7.66,7.80,12.90,6.81,24.75,7.33
Arabidopsis thaliana homolog: AT4G34160.1
Automatic updates:
Name: NM_001250222 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cyclin d3 (LOC547740), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:3423684..3423986 (+ strand)
Length: 303
Type: five_prime_UTR
Position: Chr08:3423987..3424556 (+ strand)
Length: 570
Type: CDS
Position: Chr08:3424658..3424859 (+ strand)
Length: 202
Type: CDS
Position: Chr08:3425020..3425150 (+ strand)
Length: 131
Type: CDS
Position: Chr08:3425336..3425623 (+ strand)
Length: 288
Type: CDS
Position: Chr08:3425624..3426587 (+ strand)
Length: 964
Type: three_prime_UTR

>Vigan.08G042800.01 class=Sequence position=Chr08:3423684..3426587 (+ strand)
AAAGAAGAAA ACCAAAAGCA TAATAATGTA TTAATATTGC TATTTTGATT GATTTTTTGA AGAAATGTGT GTATAAAAGA
CAAGCGTGAA ACCCACTGAG TTGAAGAAGA ATCAATCTCT CCCTTTCACC TTTCTCCACA GCCTACCACT TTTGTTCTTT
CTCTGCCTTC ATCTACTCTC ACATCTTCAC TCACTGAGAA AAGAGAGAGT GAGAAATCGA AAAAGGGAGT GATGGGTGTG
AGAATGAGTG TTTTCTTTTT ATAATGAACA AAGGAGTACA CACCCTCTTC TTCACTGAAG AAGATGGCAA TCCAGCAACA
CAATCACCAA CTACAACATA ACGAGAATGT CTCATCTCTC CTTGATGCCC TTTACTGTGA TGAAGCAAAG TGGGAAGATG
AAGAGGAGGA GGAAGAAGAA GATGAAGAGA GTGATGTCAC AACAAACAAC GATGCATGCA ACGGACCTTC TCTTTTCCCT
CTGCTCTTGT TGGAGCAAGA CTTCTTCTGG GAAGACCAGG AACTGAACTC TCTCTTTTCC AAAGAGAAGC TTCAGCATCA
ACAACTTTAC GGCTATAACA TTGATGCTAA TAACAATAAT GATGCTTGTG ACAGTACTAA CAATAATGTG CGTTTGGACC
CTTCTTTCTC TCAGCCTCGT CGTGAGGCTG TGGAATGGAT GCTCAAAGTC AATGCTCACT ATGGATTTTC TGCTCTCACT
GCAACACTGG CCGTTACTTA CCTGGATAGG TTCCTTCTAA GCTTCCATTT TCAAAGGGAG AAGCCTTGGA TGATCCAGCT
CGTGGCTGTC ACTTGCATCT CTTTGGCAGC AAAAGTTGAA GAAACTCAAG TGCCTCTTCT CTTAGACCTT CAAGTGGGTT
CATCGCAAAA CTTTGTTTCA TCTGAGTGTT TTTTTAATCG TTCGTCTTAG GTTGATGTCT CATCAAGTGT TTGTTTATGA
TGTTATGTTT TCAGGTGCAG GACACTAAGT ATGTGTTTGA GGCAAAGACT ATTCAGAGAA TGGAGCTGCT GGTGCTGTCC
ACCCTCAAAT GGAAGATGCA TCCCGTGACC CCACTCTCGT TTCTAGATCA CATCATAAGA AGGCTTGGAT TGAAAACTCA
TCTTCACTGG GAGTTTCTCA GGCGCTGCGA GCATCTTCTT CTGTCTGTGC TTTTGGGTAA GCATTTAAGA ATAATGACTA
TAGCCCTCAC TATTTCAGAT ACCATTATTG AGTTGACTTA AGACTTTTAA CTTTTCCATC AGTACAAAGA ACGAATGAAG
ATGTTATTGT GTTGATTTTC TCATCATCTA GTATGTGTGT GTTTTCTTAT GTGTAGATGC GAGATTTGTT GGGTGCCTTC
CTTCTGTTAT GGCCACTGCA ACAATGCTGC ATGTTATAGA CCAGATTGAA CACAGTGGTG GGATGGAATA CAAAAATCAG
CTTCTGAGTG TTCTCAAAAT TAACAAGGTT AGTGCCTAGA TAAGGATGTC AAGTGATAAT GTTTGTTTAT CAACATTGCT
CCTAGTCCAT GATTACGATT AAGAACACGA TTTGCATGAG CATGTTAGAT TAAGAGTAAA TAAAAGCCGA CAGTGTCATT
AATGCACATA ATAAGCACGT TATTTGATCC TAGTTACTGT GCATTTTAAC AGGAGAAAGT AGATGAGTGT TATAATGCTA
TTCTCCAACG CTCAAATGGC AATAGTTATG GTCATAACAA CAACATTTAC AAACGCAAGT ATGAGGAAAT TCCAGACAGC
CCAAGTGGCG TAATTGATGC TGCATTTGGC TCTGATGGTT CCAACGATTC GTGGGCAGTG GGGTCATCAC TATATTCATC
ACCAGAGCCT CTGTTCAAGA AGAGCAGAAC CCAAGGACAA CAAATGAAAT TGTCACCACT TAATCGGGTC ATTGTCGGAA
TTGTTGGCAC ATCTCCTTGA TACCCCTTTT TCTCTCTTTC TTCCAAAACC AAAATAAAAG AATGTCTTAT ATTTATTTAC
TGTGGTAATT AATCTTTCCA TTGATGTTGC TAAACTATAG TGCCTTCCCC TCTATGTACC TCTTCATTTC CAACAATGTC
CCACATTTGT CTACATCTAG CGAAGAGGAA GAAGTGGTCT CAGAGGGAAG AAGAGGAGGA CAAAGTTGGC AATGAAGGAT
GGTGACTATC ATCGGCTCTC TATAATATAT ATTTCAAGCA CTTTTTTTTA GTTCAATGGG TCTCATATAG ACCATACCAA
ATTTGGACAT ATTTATATCA TATTTTCTAT AATAAATTGG GAACAATTTT GTTCATGTGT ATATGCTCTT ATTCACTTCC
CTGTGTGCTT GAATTGAATG GTTACATTAC ACTATAGAAG GATGGATAAG ATTCAGAATG GTCCACCCTA AGTTTTTTAC
CATATGTTAT ATCTTTTCTC ATTAAGTAGT TTTGTAAGGA AAAAACCAGT GAGACAGAAC AAAATGAGAA GGGTTTTTGG
GCAGATTAAG AAGAGGGTTT GTTTGCATGT GAAGGGAGAA GTAGTTTGTC GGCCAGTGGG GTTTTTGGTC ATAGGGGAGG
GGGCGGGTTT CTTGATTGGG GGATTCAGTC TTTTGACCTC GTAACAAGGG CCAAACCCTT GGTCTTATTA TATTCAACTC
GCCCTAATAA TCTACTATAA CCTAACCCCT ACTTACTCAA AAACTTCTTC TACTGCTACT ACTGTTCATT GTTCATCAGG
CCTAGTAGCT AAACCTACAA GCACTTCGAT AAGGGCCCTT GGTCTCATAT GTCCCTACTT AATTATACAT GTATTTTGTT
GCCTTTGCAT GTCTTTATTC AGTGGGTTAT TACAGTAAGA TAGCATTAAA TAAGCATTTC GTACGTTGGA AACTTCAAAG
GAGTTGTCAC TCTGCAACAA TATT

>Vigan.08G042800.01
AAAGAAGAAA ACCAAAAGCA TAATAATGTA TTAATATTGC TATTTTGATT GATTTTTTGA AGAAATGTGT GTATAAAAGA
CAAGCGTGAA ACCCACTGAG TTGAAGAAGA ATCAATCTCT CCCTTTCACC TTTCTCCACA GCCTACCACT TTTGTTCTTT
CTCTGCCTTC ATCTACTCTC ACATCTTCAC TCACTGAGAA AAGAGAGAGT GAGAAATCGA AAAAGGGAGT GATGGGTGTG
AGAATGAGTG TTTTCTTTTT ATAATGAACA AAGGAGTACA CACCCTCTTC TTCACTGAAG AAGATGGCAA TCCAGCAACA
CAATCACCAA CTACAACATA ACGAGAATGT CTCATCTCTC CTTGATGCCC TTTACTGTGA TGAAGCAAAG TGGGAAGATG
AAGAGGAGGA GGAAGAAGAA GATGAAGAGA GTGATGTCAC AACAAACAAC GATGCATGCA ACGGACCTTC TCTTTTCCCT
CTGCTCTTGT TGGAGCAAGA CTTCTTCTGG GAAGACCAGG AACTGAACTC TCTCTTTTCC AAAGAGAAGC TTCAGCATCA
ACAACTTTAC GGCTATAACA TTGATGCTAA TAACAATAAT GATGCTTGTG ACAGTACTAA CAATAATGTG CGTTTGGACC
CTTCTTTCTC TCAGCCTCGT CGTGAGGCTG TGGAATGGAT GCTCAAAGTC AATGCTCACT ATGGATTTTC TGCTCTCACT
GCAACACTGG CCGTTACTTA CCTGGATAGG TTCCTTCTAA GCTTCCATTT TCAAAGGGAG AAGCCTTGGA TGATCCAGCT
CGTGGCTGTC ACTTGCATCT CTTTGGCAGC AAAAGTTGAA GAAACTCAAG TGCCTCTTCT CTTAGACCTT CAAGTGCAGG
ACACTAAGTA TGTGTTTGAG GCAAAGACTA TTCAGAGAAT GGAGCTGCTG GTGCTGTCCA CCCTCAAATG GAAGATGCAT
CCCGTGACCC CACTCTCGTT TCTAGATCAC ATCATAAGAA GGCTTGGATT GAAAACTCAT CTTCACTGGG AGTTTCTCAG
GCGCTGCGAG CATCTTCTTC TGTCTGTGCT TTTGGATGCG AGATTTGTTG GGTGCCTTCC TTCTGTTATG GCCACTGCAA
CAATGCTGCA TGTTATAGAC CAGATTGAAC ACAGTGGTGG GATGGAATAC AAAAATCAGC TTCTGAGTGT TCTCAAAATT
AACAAGGAGA AAGTAGATGA GTGTTATAAT GCTATTCTCC AACGCTCAAA TGGCAATAGT TATGGTCATA ACAACAACAT
TTACAAACGC AAGTATGAGG AAATTCCAGA CAGCCCAAGT GGCGTAATTG ATGCTGCATT TGGCTCTGAT GGTTCCAACG
ATTCGTGGGC AGTGGGGTCA TCACTATATT CATCACCAGA GCCTCTGTTC AAGAAGAGCA GAACCCAAGG ACAACAAATG
AAATTGTCAC CACTTAATCG GGTCATTGTC GGAATTGTTG GCACATCTCC TTGATACCCC TTTTTCTCTC TTTCTTCCAA
AACCAAAATA AAAGAATGTC TTATATTTAT TTACTGTGGT AATTAATCTT TCCATTGATG TTGCTAAACT ATAGTGCCTT
CCCCTCTATG TACCTCTTCA TTTCCAACAA TGTCCCACAT TTGTCTACAT CTAGCGAAGA GGAAGAAGTG GTCTCAGAGG
GAAGAAGAGG AGGACAAAGT TGGCAATGAA GGATGGTGAC TATCATCGGC TCTCTATAAT ATATATTTCA AGCACTTTTT
TTTAGTTCAA TGGGTCTCAT ATAGACCATA CCAAATTTGG ACATATTTAT ATCATATTTT CTATAATAAA TTGGGAACAA
TTTTGTTCAT GTGTATATGC TCTTATTCAC TTCCCTGTGT GCTTGAATTG AATGGTTACA TTACACTATA GAAGGATGGA
TAAGATTCAG AATGGTCCAC CCTAAGTTTT TTACCATATG TTATATCTTT TCTCATTAAG TAGTTTTGTA AGGAAAAAAC
CAGTGAGACA GAACAAAATG AGAAGGGTTT TTGGGCAGAT TAAGAAGAGG GTTTGTTTGC ATGTGAAGGG AGAAGTAGTT
TGTCGGCCAG TGGGGTTTTT GGTCATAGGG GAGGGGGCGG GTTTCTTGAT TGGGGGATTC AGTCTTTTGA CCTCGTAACA
AGGGCCAAAC CCTTGGTCTT ATTATATTCA ACTCGCCCTA ATAATCTACT ATAACCTAAC CCCTACTTAC TCAAAAACTT
CTTCTACTGC TACTACTGTT CATTGTTCAT CAGGCCTAGT AGCTAAACCT ACAAGCACTT CGATAAGGGC CCTTGGTCTC
ATATGTCCCT ACTTAATTAT ACATGTATTT TGTTGCCTTT GCATGTCTTT ATTCAGTGGG TTATTACAGT AAGATAGCAT
TAAATAAGCA TTTCGTACGT TGGAAACTTC AAAGGAGTTG TCACTCTGCA ACAATATT

>Vigan.08G042800.01
ATGGCAATCC AGCAACACAA TCACCAACTA CAACATAACG AGAATGTCTC ATCTCTCCTT GATGCCCTTT ACTGTGATGA
AGCAAAGTGG GAAGATGAAG AGGAGGAGGA AGAAGAAGAT GAAGAGAGTG ATGTCACAAC AAACAACGAT GCATGCAACG
GACCTTCTCT TTTCCCTCTG CTCTTGTTGG AGCAAGACTT CTTCTGGGAA GACCAGGAAC TGAACTCTCT CTTTTCCAAA
GAGAAGCTTC AGCATCAACA ACTTTACGGC TATAACATTG ATGCTAATAA CAATAATGAT GCTTGTGACA GTACTAACAA
TAATGTGCGT TTGGACCCTT CTTTCTCTCA GCCTCGTCGT GAGGCTGTGG AATGGATGCT CAAAGTCAAT GCTCACTATG
GATTTTCTGC TCTCACTGCA ACACTGGCCG TTACTTACCT GGATAGGTTC CTTCTAAGCT TCCATTTTCA AAGGGAGAAG
CCTTGGATGA TCCAGCTCGT GGCTGTCACT TGCATCTCTT TGGCAGCAAA AGTTGAAGAA ACTCAAGTGC CTCTTCTCTT
AGACCTTCAA GTGCAGGACA CTAAGTATGT GTTTGAGGCA AAGACTATTC AGAGAATGGA GCTGCTGGTG CTGTCCACCC
TCAAATGGAA GATGCATCCC GTGACCCCAC TCTCGTTTCT AGATCACATC ATAAGAAGGC TTGGATTGAA AACTCATCTT
CACTGGGAGT TTCTCAGGCG CTGCGAGCAT CTTCTTCTGT CTGTGCTTTT GGATGCGAGA TTTGTTGGGT GCCTTCCTTC
TGTTATGGCC ACTGCAACAA TGCTGCATGT TATAGACCAG ATTGAACACA GTGGTGGGAT GGAATACAAA AATCAGCTTC
TGAGTGTTCT CAAAATTAAC AAGGAGAAAG TAGATGAGTG TTATAATGCT ATTCTCCAAC GCTCAAATGG CAATAGTTAT
GGTCATAACA ACAACATTTA CAAACGCAAG TATGAGGAAA TTCCAGACAG CCCAAGTGGC GTAATTGATG CTGCATTTGG
CTCTGATGGT TCCAACGATT CGTGGGCAGT GGGGTCATCA CTATATTCAT CACCAGAGCC TCTGTTCAAG AAGAGCAGAA
CCCAAGGACA ACAAATGAAA TTGTCACCAC TTAATCGGGT CATTGTCGGA ATTGTTGGCA CATCTCCTTG A

>Vigan.08G042800.01
MAIQQHNHQL QHNENVSSLL DALYCDEAKW EDEEEEEEED EESDVTTNND ACNGPSLFPL LLLEQDFFWE DQELNSLFSK
EKLQHQQLYG YNIDANNNND ACDSTNNNVR LDPSFSQPRR EAVEWMLKVN AHYGFSALTA TLAVTYLDRF LLSFHFQREK
PWMIQLVAVT CISLAAKVEE TQVPLLLDLQ VQDTKYVFEA KTIQRMELLV LSTLKWKMHP VTPLSFLDHI IRRLGLKTHL
HWEFLRRCEH LLLSVLLDAR FVGCLPSVMA TATMLHVIDQ IEHSGGMEYK NQLLSVLKIN KEKVDECYNA ILQRSNGNSY
GHNNNIYKRK YEEIPDSPSG VIDAAFGSDG SNDSWAVGSS LYSSPEPLFK KSRTQGQQMK LSPLNRVIVG IVGTSP*