GBrowse Details

Vigan.08G019400.01

Basic Information:
Name: Vigan.08G019400.01
Multiple alignment
Variant Information
Position: Chr08:1404369..1406484 (+ strand)
Length: 2116
Functional Information:
Description: Similar to Mitochondrial protein import protein ZIM17. [W9QBV3, Morus notabilis.]
GO: Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, DNL-type (IPR007853)
Mitochondrial import protein TIM15 (IPR024158)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:101.35,26.85,44.27,146.17,17.38,33.5 8,14.50,26.41
Arabidopsis thaliana homolog: AT5G27280.1
Automatic updates:
Name: NM_001249618 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527474 (LOC100527474), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249618 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max DNL zinc finger protein (LOC100527474), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:1404369..1404465 (+ strand)
Length: 97
Type: five_prime_UTR
Position: Chr08:1404466..1404595 (+ strand)
Length: 130
Type: CDS
Position: Chr08:1404675..1404760 (+ strand)
Length: 86
Type: CDS
Position: Chr08:1405193..1405447 (+ strand)
Length: 255
Type: CDS
Position: Chr08:1406178..1406348 (+ strand)
Length: 171
Type: CDS
Position: Chr08:1406349..1406484 (+ strand)
Length: 136
Type: three_prime_UTR

>Vigan.08G019400.01 class=Sequence position=Chr08:1404369..1406484 (+ strand)
TTTAGAAATT AGAAATAAGA AGCTTAGACA AGGAATTGGA TTCTTGGTTT TGTTTACTTT AGTTTGTTCT GTCTGAGAAG
ACAACACAAT TTTATTGATG ATGGAAACCT TGGCCACATC TTCTTCTGCA ACTCTTCCAT CTTCCTCTTC TCCCTTTTCG
ATTTTCCCTT CAAGAAGAAC CTCTCTTTTT CCTTCCAAGA CTCTCCAATT TCGTTTACCC TCCAAGCGTG CGTATTCTAT
TCCATTCTTT TTGCTTACCC TTTTGTTTTC TGCGTCATTT TTCTTCAATT TAGTGTTTTG TTTCAGGTGA TGATGCTCTC
GATTCAGACG CCAAGGATAA CATCCTTCCA ATTATCAATG ATCGCTGCCT CTCCCTTTCG CCTCTGTCCA AAGTACGTCC
TTTTCTCTTC CCAAAATTTC AACTTGAATC AGTTTCTGTG CATAACTTAT CCCGAATTTT AAGGGGCCAA TTGCATTCTT
TTGATGGATA AAAAAACTGT TTTTTTTTTT TATCAAAAAG AAAATTAAAT CAACTGTGTT AATCATATTC CCAAATTTAT
GCTTCAATGC TTTTCCATGC CTAACATAGG TGAAATTTCA AAGGGTCCGT TACCTTACGT GAAATGGATG CAATGAATAA
AAATAAAATT GTTGTCATGG AAATATATAA TTTGGTTATT CCTTTTCCAA AATCTGAAGT TCAATTTGCA TCGGTATTTA
AAAGGGTCAA GTGATGTGCC TTGCATTAGA TGCAATGGAG TATAAAAGTG TACTTTTTTT GGTCATGAAA GTTATTAAAT
TCTGATAAGA ATTTGTTGGG TCAGGATGCT GCGATGGGAC TGGTACTGAG TGCTGCGGTG GGTAGAGGAT GGACCACTGG
TTCAGGGATG GAAGGTCCCT CTGTTCCTGC AGTTGGTAGG GGTAATGAAT CGGGGAACAT CTCCACTTTC CCATGGTCTC
TCTTCACCAA ATCCCCTAGG AGAAGGATGC TGGTGGCTTT TACTTGTACC ATCTGTGGCC AGCGAACTAC ACGAGCCATT
AATCCCCATG CTTACACTGA TGGCACTGTC TTTGTGCAGG TAACCTTTTG CTTTTGTTAA CCTTAACCCT ATCATCACAT
GTCTCAGTGA TTTTCTTGAT ATGAAGTTGG AGCCAAATCA TAAACTAATG GCAGTTTGCC AAACGGAACT GATTCATGGT
TTTACGAGAA AACTTTGGTT GAACTGTTAT GCTGTTATGC GTGTGTAAAT GAAATGAATG TTTGTCATAG TATGTATAAA
AATAACAATC AAAAGAAAAG TTGGATACCT GCACAAAATA TCAATCATTT TTCAATTTTA GAACATTGAT CCGGCTCATG
GACAATCAGA TTGGTTTCTG TGGTTCAATG TTTCTAAAGC TGGTTTTAAA GTAATGCTTT ACGTGGCTTG ATCAAACTGG
TTGATTTCTT GTTCATGGTT GAACCAGTCA GACTAATTGG TGCAGTCTGC TTTTTGAAAA AACTGTTTTT TATATATTCT
GTGAGATTAT CGTAGAAATA AGATGTTTTA TCTATTCTCT GGTTGTCTTC TGCTTACCAG ATATGAGACC ACCATATGTT
AGAGAAATAG ACTCGTTCGT TTAATACTAA AAAGTTGATA ATGTTATAAC TTTATACATA TTTTAATATT TTGATACATA
AATTTATTTT CTCAAATAAC ATGTGTATAT GATTTTTTTA ACATATTGTT AAATAATTAT GTGTGTATGG GGCGGGGTCT
GAACTCTAAA CCCTTAAGCA AAATCTTGAC CGTTTGTCAT TGTTGTCAGT GCTGTGGATG CAATGCGTAT CATAAGCTGG
TGGATCACTT GAACTTGTTT CAGGAGACAA ATTGCTATTT GAATTCAAGT TTTAAGTTTA AAGGAGAAGG ATGGGATGAT
CTTAAGTTTA GGTATATGGA TGATAACGAT GACGACAATG ACATATTTCC CATTTCATAA GTGAATTGTC ATATGGATCA
TATACCTTCT GCCTGATTGT ATCGAAGTTC AGTTTAGATG TCTTGTATAT TCTCTAGGTT TTCATGCTTT ATAGTAAAAT
TTGTACGGGA CTCGTACAGT AACATGTTTA TATATA

>Vigan.08G019400.01
TTTAGAAATT AGAAATAAGA AGCTTAGACA AGGAATTGGA TTCTTGGTTT TGTTTACTTT AGTTTGTTCT GTCTGAGAAG
ACAACACAAT TTTATTGATG ATGGAAACCT TGGCCACATC TTCTTCTGCA ACTCTTCCAT CTTCCTCTTC TCCCTTTTCG
ATTTTCCCTT CAAGAAGAAC CTCTCTTTTT CCTTCCAAGA CTCTCCAATT TCGTTTACCC TCCAAGCGTG ATGATGCTCT
CGATTCAGAC GCCAAGGATA ACATCCTTCC AATTATCAAT GATCGCTGCC TCTCCCTTTC GCCTCTGTCC AAAGATGCTG
CGATGGGACT GGTACTGAGT GCTGCGGTGG GTAGAGGATG GACCACTGGT TCAGGGATGG AAGGTCCCTC TGTTCCTGCA
GTTGGTAGGG GTAATGAATC GGGGAACATC TCCACTTTCC CATGGTCTCT CTTCACCAAA TCCCCTAGGA GAAGGATGCT
GGTGGCTTTT ACTTGTACCA TCTGTGGCCA GCGAACTACA CGAGCCATTA ATCCCCATGC TTACACTGAT GGCACTGTCT
TTGTGCAGTG CTGTGGATGC AATGCGTATC ATAAGCTGGT GGATCACTTG AACTTGTTTC AGGAGACAAA TTGCTATTTG
AATTCAAGTT TTAAGTTTAA AGGAGAAGGA TGGGATGATC TTAAGTTTAG GTATATGGAT GATAACGATG ACGACAATGA
CATATTTCCC ATTTCATAAG TGAATTGTCA TATGGATCAT ATACCTTCTG CCTGATTGTA TCGAAGTTCA GTTTAGATGT
CTTGTATATT CTCTAGGTTT TCATGCTTTA TAGTAAAATT TGTACGGGAC TCGTACAGTA ACATGTTTAT ATATA

>Vigan.08G019400.01
ATGATGGAAA CCTTGGCCAC ATCTTCTTCT GCAACTCTTC CATCTTCCTC TTCTCCCTTT TCGATTTTCC CTTCAAGAAG
AACCTCTCTT TTTCCTTCCA AGACTCTCCA ATTTCGTTTA CCCTCCAAGC GTGATGATGC TCTCGATTCA GACGCCAAGG
ATAACATCCT TCCAATTATC AATGATCGCT GCCTCTCCCT TTCGCCTCTG TCCAAAGATG CTGCGATGGG ACTGGTACTG
AGTGCTGCGG TGGGTAGAGG ATGGACCACT GGTTCAGGGA TGGAAGGTCC CTCTGTTCCT GCAGTTGGTA GGGGTAATGA
ATCGGGGAAC ATCTCCACTT TCCCATGGTC TCTCTTCACC AAATCCCCTA GGAGAAGGAT GCTGGTGGCT TTTACTTGTA
CCATCTGTGG CCAGCGAACT ACACGAGCCA TTAATCCCCA TGCTTACACT GATGGCACTG TCTTTGTGCA GTGCTGTGGA
TGCAATGCGT ATCATAAGCT GGTGGATCAC TTGAACTTGT TTCAGGAGAC AAATTGCTAT TTGAATTCAA GTTTTAAGTT
TAAAGGAGAA GGATGGGATG ATCTTAAGTT TAGGTATATG GATGATAACG ATGACGACAA TGACATATTT CCCATTTCAT
AA

>Vigan.08G019400.01
MMETLATSSS ATLPSSSSPF SIFPSRRTSL FPSKTLQFRL PSKRDDALDS DAKDNILPII NDRCLSLSPL SKDAAMGLVL
SAAVGRGWTT GSGMEGPSVP AVGRGNESGN ISTFPWSLFT KSPRRRMLVA FTCTICGQRT TRAINPHAYT DGTVFVQCCG
CNAYHKLVDH LNLFQETNCY LNSSFKFKGE GWDDLKFRYM DDNDDDNDIF PIS*