GBrowse Details

Vigan.08G005700.01

Basic Information:
Name: Vigan.08G005700.01
Multiple alignment
Variant Information
Position: Chr08:331672..333222 (+ strand)
Length: 1551
Functional Information:
Description: Similar to Uncharacterized protein. [B7FH05, Medicago truncatula]
GO: Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603)
Cellular Component: proteasome core complex (GO:0005839)
Molecular Function: threonine-type endopeptidase activity (GO:0004298)
InterPro: Proteasome, subunit alpha/beta (IPR001353)
Proteasome B-type subunit (IPR023333)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:54.26,32.46,61.44,39.36,82.14,132.08 ,56.95,45.39
Arabidopsis thaliana homolog: AT3G22630.1
Automatic updates:
Name: NM_001248413 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499738 (LOC100499738), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001248413 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max proteasome subunit beta type-2 (LOC100499738), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:331672..331801 (+ strand)
Length: 130
Type: five_prime_UTR
Position: Chr08:331802..331959 (+ strand)
Length: 158
Type: CDS
Position: Chr08:332033..332156 (+ strand)
Length: 124
Type: CDS
Position: Chr08:332443..332775 (+ strand)
Length: 333
Type: CDS
Position: Chr08:332776..333222 (+ strand)
Length: 447
Type: three_prime_UTR

>Vigan.08G005700.01 class=Sequence position=Chr08:331672..333222 (+ strand)
GGAATTTGGG GAGATATAAA GCTTGTGCGG CATCAAAACC TTGCTCAACT TCACTACATT ACAGAGAAGA AGCAGAAGAA
GAACAAGAAA ACGAAGAAGA AGAAGAAAAC AAGAAGAATT AGAATCCGAC ATGGAGTGCG TATTCGGATT GGTCGGAAAT
GGGTTCGCGA TCGTGGTGGC GGATTCATCG GCGGTGCACA GCATCCTCGT TCACAAGTCC AACGAAGACA AGATCATGGT
CCTCGATTCC CACAAACTCA TCGCCGCTAG CGGTGAACCC GGAGACAGGT ATCTAGGATT AGGGTTTCCT CTCCCACTCT
TTTTTAATCT TCTTCTTTTC TCTCACTCGC TTTCGTTTTA GGGTTCAATT CACAGAGTAC ATTCAGAAGA ATGTCGCCTT
GTATCAGTTC CGTAACGGCA TCCCTCTCAC CACCGCCGCC GCTGCCAATT TCACACGTGG AGAACTTGCC ACCGCTCTAC
GCAAGGTATC TTCCAAACCC CAGTGCCCAT TCTTTTAACG TTCGTAGGTT CTGTTTGTAT TAAGTGCTCA CGAATCAGCA
TATAAAACTA ACTGAGCTTC TCCTTAGCCC TAAATCAATT TATGCACTTA ACTTCTGTAG AAGCTATCTC ATCTGATTCC
TCCGATTTAG CTCATGGGAG TTTGATTCAT TTTGCATTCT TACTCGGTGT TTATGGAGAA GCTTCTCCAA ACAATGCCTT
GGCTATGCAA TTAATTTGGT GTCTCAAATC TTAATCTGTC TTTTTGTTTA GAACCCCTAC TCCGTGAACA TCCTTCTTGC
TGGTTATGAC AAAGAGACTG GTCCTGAACT GTACTACATT GACTACATTG CAACCCTTCA CAAGCTTGAA AAGGGGGCTT
TTGGTTATGG CTCCTATTTT TCGCTCTCAA TGATGGACAG ACACTACCAT AGTGGAATGT CAGTTGAAGA GGCAATTGAT
CTCGTTGATA AGTGCATTAT GGAGATCAGA TCCAGGCTGG TTGTTGCGCC ACCCAACTTT GTTATTAAAA TTGTTGACAA
GGATGGTGCA AGGGAGTATG CGTGGCGTGA ATCAGTCAAG GACACTCCTG TTCCTTCCGC TTGAGTAACC GTCCCTAATT
CTCATCGGAC TTTATTCCAT CTGCCTATGT TTTTATCCTT TTTACAATTT TTTTTACTGG TCTTGTAATG TCTCTGAAAA
TCATGGTCTA TAGATGATGC ACTTAAGTAA GACAGTTTAT CATTTGAATT AATATGAACG ATGACTAGTT CTCTGCCAGA
AATGATTTAT TGTGAGGTAG GCTTGATTTT TATGGATGTG GATACTGGCT CCTCCTTGTC TTTGCTGTTG TTGAATGATC
TTTCAAGTGT TGTATTCACC CCAGGATTTT AGTTATTTAG GATGTTGGCC AATCTTACCA CAGTACAGTA GCAAGTTGTG
CAGATGCAGT CGTGTTGGAA AATCATTTGA GAAAAATGTT TAGATAACTC AGTGGTAATG GTTTGTGTGT GTGTGTGTTT
AATAACATTC ATTCGTTTAA TTACCGTTAA C

>Vigan.08G005700.01
GGAATTTGGG GAGATATAAA GCTTGTGCGG CATCAAAACC TTGCTCAACT TCACTACATT ACAGAGAAGA AGCAGAAGAA
GAACAAGAAA ACGAAGAAGA AGAAGAAAAC AAGAAGAATT AGAATCCGAC ATGGAGTGCG TATTCGGATT GGTCGGAAAT
GGGTTCGCGA TCGTGGTGGC GGATTCATCG GCGGTGCACA GCATCCTCGT TCACAAGTCC AACGAAGACA AGATCATGGT
CCTCGATTCC CACAAACTCA TCGCCGCTAG CGGTGAACCC GGAGACAGGG TTCAATTCAC AGAGTACATT CAGAAGAATG
TCGCCTTGTA TCAGTTCCGT AACGGCATCC CTCTCACCAC CGCCGCCGCT GCCAATTTCA CACGTGGAGA ACTTGCCACC
GCTCTACGCA AGAACCCCTA CTCCGTGAAC ATCCTTCTTG CTGGTTATGA CAAAGAGACT GGTCCTGAAC TGTACTACAT
TGACTACATT GCAACCCTTC ACAAGCTTGA AAAGGGGGCT TTTGGTTATG GCTCCTATTT TTCGCTCTCA ATGATGGACA
GACACTACCA TAGTGGAATG TCAGTTGAAG AGGCAATTGA TCTCGTTGAT AAGTGCATTA TGGAGATCAG ATCCAGGCTG
GTTGTTGCGC CACCCAACTT TGTTATTAAA ATTGTTGACA AGGATGGTGC AAGGGAGTAT GCGTGGCGTG AATCAGTCAA
GGACACTCCT GTTCCTTCCG CTTGAGTAAC CGTCCCTAAT TCTCATCGGA CTTTATTCCA TCTGCCTATG TTTTTATCCT
TTTTACAATT TTTTTTACTG GTCTTGTAAT GTCTCTGAAA ATCATGGTCT ATAGATGATG CACTTAAGTA AGACAGTTTA
TCATTTGAAT TAATATGAAC GATGACTAGT TCTCTGCCAG AAATGATTTA TTGTGAGGTA GGCTTGATTT TTATGGATGT
GGATACTGGC TCCTCCTTGT CTTTGCTGTT GTTGAATGAT CTTTCAAGTG TTGTATTCAC CCCAGGATTT TAGTTATTTA
GGATGTTGGC CAATCTTACC ACAGTACAGT AGCAAGTTGT GCAGATGCAG TCGTGTTGGA AAATCATTTG AGAAAAATGT
TTAGATAACT CAGTGGTAAT GGTTTGTGTG TGTGTGTGTT TAATAACATT CATTCGTTTA ATTACCGTTA AC

>Vigan.08G005700.01
ATGGAGTGCG TATTCGGATT GGTCGGAAAT GGGTTCGCGA TCGTGGTGGC GGATTCATCG GCGGTGCACA GCATCCTCGT
TCACAAGTCC AACGAAGACA AGATCATGGT CCTCGATTCC CACAAACTCA TCGCCGCTAG CGGTGAACCC GGAGACAGGG
TTCAATTCAC AGAGTACATT CAGAAGAATG TCGCCTTGTA TCAGTTCCGT AACGGCATCC CTCTCACCAC CGCCGCCGCT
GCCAATTTCA CACGTGGAGA ACTTGCCACC GCTCTACGCA AGAACCCCTA CTCCGTGAAC ATCCTTCTTG CTGGTTATGA
CAAAGAGACT GGTCCTGAAC TGTACTACAT TGACTACATT GCAACCCTTC ACAAGCTTGA AAAGGGGGCT TTTGGTTATG
GCTCCTATTT TTCGCTCTCA ATGATGGACA GACACTACCA TAGTGGAATG TCAGTTGAAG AGGCAATTGA TCTCGTTGAT
AAGTGCATTA TGGAGATCAG ATCCAGGCTG GTTGTTGCGC CACCCAACTT TGTTATTAAA ATTGTTGACA AGGATGGTGC
AAGGGAGTAT GCGTGGCGTG AATCAGTCAA GGACACTCCT GTTCCTTCCG CTTGA

>Vigan.08G005700.01
MECVFGLVGN GFAIVVADSS AVHSILVHKS NEDKIMVLDS HKLIAASGEP GDRVQFTEYI QKNVALYQFR NGIPLTTAAA
ANFTRGELAT ALRKNPYSVN ILLAGYDKET GPELYYIDYI ATLHKLEKGA FGYGSYFSLS MMDRHYHSGM SVEEAIDLVD
KCIMEIRSRL VVAPPNFVIK IVDKDGAREY AWRESVKDTP VPSA*