GBrowse Details

Vigan.07G107700.01

Basic Information:
Name: Vigan.07G107700.01
Multiple alignment
Variant Information
Position: Chr07:9763145..9766045 (+ strand)
Length: 2901
Functional Information:
Description: Similar to Chaperone protein dnaJ. [B7FJQ7, Medicago truncatula]
GO: Molecular Function: iron ion binding (GO:0005506)
Molecular Function: electron carrier activity (GO:0009055)
Molecular Function: iron-sulfur cluster binding (GO:0051536)
InterPro: 3Fe-4S ferredoxin (IPR001080)
DnaJ domain (IPR001623)
4Fe-4S ferredoxin-type, iron-sulpur binding domain (IPR017896)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.22,2.09,45.35,162.09,0.59,25.10,0. 86,46.98
Arabidopsis thaliana homolog: AT2G42750.1
Automatic updates:
Name: NM_001255129 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100809007 (LOC100809007), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255129 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max DnaJ and 4Fe-4S dicluster domain-containing protein (LOC100809007), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:9763145..9763231 (+ strand)
Length: 87
Type: five_prime_UTR
Position: Chr07:9763232..9763462 (+ strand)
Length: 231
Type: CDS
Position: Chr07:9763658..9763786 (+ strand)
Length: 129
Type: CDS
Position: Chr07:9763871..9764000 (+ strand)
Length: 130
Type: CDS
Position: Chr07:9764146..9764266 (+ strand)
Length: 121
Type: CDS
Position: Chr07:9764788..9764869 (+ strand)
Length: 82
Type: CDS
Position: Chr07:9765007..9765060 (+ strand)
Length: 54
Type: CDS
Position: Chr07:9765259..9765297 (+ strand)
Length: 39
Type: CDS
Position: Chr07:9765434..9765533 (+ strand)
Length: 100
Type: CDS
Position: Chr07:9765659..9765789 (+ strand)
Length: 131
Type: CDS
Position: Chr07:9765790..9766045 (+ strand)
Length: 256
Type: three_prime_UTR

>Vigan.07G107700.01 class=Sequence position=Chr07:9763145..9766045 (+ strand)
TTCCAGTATT TTACAACTGC AGCAACCCAA GTTCACACAC ATATTGATTG GAACAAGGTT CTTCTGAGTG GAGTTTGGTT
TGGAATTATG GCTCAGTTAT TGTCTCCAGT GTGTATGGAG GCACTGAAAA TCCACAACCC ATCATTGAAT TTGTGTTCAA
GAGGCTCATG GCGGATGCTG GTGAAGACTC CAAGTCATTG CACTTTTGTG ACACAAAGTG GTAAGCGAAG AGGGTCTGGC
AGAGTAAGAG TTACAGCAGA AGATTCAGTT TCTCCCACTG ATACTATTGC AGATGACTAT TATGCAGTTC TGGGTCTGGT
GATGCTTCAA ACTCTCACTT CCTTCTCTTT ATTTCTGCTT AAAGTATTCA AACATGCACA CATATAATGA GTTTGGAAGT
ATTTCTAAGA TGAAAAACTC TATAAGTTTT TAGCTTACTG TAATCATTAG ACATGATCTG AATGTTTGTC AAATGTTACG
TATAATTAAG ATGTGGTTGG TCTGCTTTTC TAGCTTCCTG ATGCCTCACC AGAGCAGATC AAGAAGGCAT ACTACAATTG
CATGAAATCT TGCCACCCTG ACTTGAGTGG CAATGATCCT GAGACCACCA ATTTCTGCAT ATTCATTAAT GAAGTGTACA
CGGTTGGTTC CATTTTAAGT TTCTAAAGTT TTAAGCTTTG GGGGTTTTGT CTGTGCTTTT ACTGGAAATT GACTATTCCA
GTGCAGGTGC TAAGTGATCC CATCCAGCGC AGGATTTATG ATGAAATTCA TGGCTATTCT TTAACTTCAA TCAATCCTTT
CCTCGATGAT TCAAGCCCAA GGGATCATGC CTTTGTTGAT GAGTTCAGCT GCATAGGTAA TTTGTTCTAA TTACTTAAAA
TAATATGCTT TATTCTTTTG CCTGAATTTA TACACCATTG TGGATACCAG CTATGCTTGT AAGTTTTGCA GTGAGCAGTT
AAAAAGCATC TTATATAAGT ATGCTGCAAA CCCTTTTACA GGCTGCAAAA ACTGTGCAAA TGTAGCCCCT GATGTGTTTG
AAATTGAAGA GGACTTTGGA AGAGCCAGAG CATTCAACCA ATGTGGGAAC CCTGAATTAG TTCAACAGGC GATTGACAGT
TGGTATCTCT AAGTTTCCTA TATTTATTAC TTATATATGT ACTGACACAT TTAATCTGAT TATAGAACAA GTATAATGAA
CATTACCGAG CTTTGCTTCT AAGAGTGGAC TTAGATTTCA CTTTTACTGC TAGTATCTTT TCAAGATGTA TTTCTGATGG
TGGATCTTGG CTTTCATACT ATTAAAGGTG AAAAGAATAT CTCTAAATGA TCAAAAGGAA CCATAAAATG TTGAAGATTG
GTTAATATAA TTTGACATGT CTTAAAATGC CTACCACTTT TCTGAGAGAA GTCCTTTCAT TCAATTGTCC CTTTTTATTA
TATAACTTGA GAATTTAAGA TCAGAATCTT CTGACTTATG TGTGCAGTAT TGTATAACTA TACAGACACA ATCCATTGAG
ATGTTAATTT TACTTTCTTA TAGGCCCTAG ATACTTGAGA TTTAGAACCT TTGCTATCAC AATAATATCT GCTCAGAGAT
TGCTGGAACC GATTTAACTT AACCTTTGAT TTCTTAATTT CAGCCCTGTT AGCTGCATTC ATTGGACATC TGCTGCACAA
CTATCATTAC TTGAAGATGA GATGCGCCGT GTCGAACGAG TCAATGTAAA TCCTAAATTT ATTATATCCA TGCTATAAGC
TTGCAATAGA GTCCCTAAAT TTATTCTGGA CTTACAAATG CTCATGATCT TGTAAGTGTT TTATACTTTT TATATATCTT
GTAACTCTTT TTCTATGAGC AGGTTGCCCT GATGCTATCA GGAATGGGAA CAGCTTCAAT TGATGTTTTC AGAATGGTAA
GAATAAAGAA ATGAATACAG GAGTTGTTCC AATCTTTTTA TCTAAGTTTG GTGGATATTT GTGGGTTGAT GGGGATTTCT
TGGGTTGCAA GTCACAATAA TCATATTCTG CAGAATTTGA TAATTCTTAA TTTTCAAGCA GATTTAGTGT TGTAATGGTA
CTTGTCTAAC ATGATATCTA TGTATTATTG ACAGGCAAGT TCCAGATGGG AAAAGAGGCA ATCAAAAGTC TTGGTTAGAA
CTCCTAAGTC CTAATTGTGT TAATATGATT CACTTTATAA TGTAACTGTG ATTAATTTAC TCAGCTAAAA AGCTAGTGAT
GAACTAATTA AGTTTTAAGC ATAATCAAAT ATTCATGTGC TTCTTGCAGG AAAAAGCAAA ATTTAGAATG ATGAAGCAAG
AAGGTTCTGA TAAGAAAAGT TCATACTGGG ACAATCTGTG GGGCAAACAA AAAGAGTACC AAAGTTCAGG TACGACGATG
TGAAACTACA AAGGGGATAT AAACTTCAAA TTATTGTAAA ATATAAAAAT TTGCTTTTTA GAAATCTCTG TTTATGTCAT
TTTAAGTGTC TTTCAAATGG TAATTGTTTG GCAGATGAGG AAGTTGAAGA AAGAGCAAGA AGAGCTGCTT CAGCAGCAAG
AAGATGGAGG GAATACTCAA GGAAGGGTGT TGATAATCCT CCAACATTTA AACTCCCAGA AGCAAACCCT GCCAAGGAAA
AATGAACATT ACTTAAATTA TCTTCTGTAT AATTTAGTCC CATGTAATTA ATTCATGTAT AGCCTCTCAT GAACTAATGA
GATCTTTCTC ACTCTACTAT CTGTGATTGT ATATGCAGCA ACTATAGTTA TACAAGGGGA AAATATAAGA AAACTATTAC
TAAGTCCTTT TACTTTTTTT CATGAACAGC TTTTTCTCGA ATCATGGTTG TAGAATATTC TTCACGTGTG CACAAATAAT
TGCAAACGAG TCTTGTCTTT A

>Vigan.07G107700.01
TTCCAGTATT TTACAACTGC AGCAACCCAA GTTCACACAC ATATTGATTG GAACAAGGTT CTTCTGAGTG GAGTTTGGTT
TGGAATTATG GCTCAGTTAT TGTCTCCAGT GTGTATGGAG GCACTGAAAA TCCACAACCC ATCATTGAAT TTGTGTTCAA
GAGGCTCATG GCGGATGCTG GTGAAGACTC CAAGTCATTG CACTTTTGTG ACACAAAGTG GTAAGCGAAG AGGGTCTGGC
AGAGTAAGAG TTACAGCAGA AGATTCAGTT TCTCCCACTG ATACTATTGC AGATGACTAT TATGCAGTTC TGGGTCTGCT
TCCTGATGCC TCACCAGAGC AGATCAAGAA GGCATACTAC AATTGCATGA AATCTTGCCA CCCTGACTTG AGTGGCAATG
ATCCTGAGAC CACCAATTTC TGCATATTCA TTAATGAAGT GTACACGGTG CTAAGTGATC CCATCCAGCG CAGGATTTAT
GATGAAATTC ATGGCTATTC TTTAACTTCA ATCAATCCTT TCCTCGATGA TTCAAGCCCA AGGGATCATG CCTTTGTTGA
TGAGTTCAGC TGCATAGGCT GCAAAAACTG TGCAAATGTA GCCCCTGATG TGTTTGAAAT TGAAGAGGAC TTTGGAAGAG
CCAGAGCATT CAACCAATGT GGGAACCCTG AATTAGTTCA ACAGGCGATT GACAGTTGCC CTGTTAGCTG CATTCATTGG
ACATCTGCTG CACAACTATC ATTACTTGAA GATGAGATGC GCCGTGTCGA ACGAGTCAAT GTTGCCCTGA TGCTATCAGG
AATGGGAACA GCTTCAATTG ATGTTTTCAG AATGGCAAGT TCCAGATGGG AAAAGAGGCA ATCAAAAGTC TTGGAAAAAG
CAAAATTTAG AATGATGAAG CAAGAAGGTT CTGATAAGAA AAGTTCATAC TGGGACAATC TGTGGGGCAA ACAAAAAGAG
TACCAAAGTT CAGATGAGGA AGTTGAAGAA AGAGCAAGAA GAGCTGCTTC AGCAGCAAGA AGATGGAGGG AATACTCAAG
GAAGGGTGTT GATAATCCTC CAACATTTAA ACTCCCAGAA GCAAACCCTG CCAAGGAAAA ATGAACATTA CTTAAATTAT
CTTCTGTATA ATTTAGTCCC ATGTAATTAA TTCATGTATA GCCTCTCATG AACTAATGAG ATCTTTCTCA CTCTACTATC
TGTGATTGTA TATGCAGCAA CTATAGTTAT ACAAGGGGAA AATATAAGAA AACTATTACT AAGTCCTTTT ACTTTTTTTC
ATGAACAGCT TTTTCTCGAA TCATGGTTGT AGAATATTCT TCACGTGTGC ACAAATAATT GCAAACGAGT CTTGTCTTTA

>Vigan.07G107700.01
ATGGCTCAGT TATTGTCTCC AGTGTGTATG GAGGCACTGA AAATCCACAA CCCATCATTG AATTTGTGTT CAAGAGGCTC
ATGGCGGATG CTGGTGAAGA CTCCAAGTCA TTGCACTTTT GTGACACAAA GTGGTAAGCG AAGAGGGTCT GGCAGAGTAA
GAGTTACAGC AGAAGATTCA GTTTCTCCCA CTGATACTAT TGCAGATGAC TATTATGCAG TTCTGGGTCT GCTTCCTGAT
GCCTCACCAG AGCAGATCAA GAAGGCATAC TACAATTGCA TGAAATCTTG CCACCCTGAC TTGAGTGGCA ATGATCCTGA
GACCACCAAT TTCTGCATAT TCATTAATGA AGTGTACACG GTGCTAAGTG ATCCCATCCA GCGCAGGATT TATGATGAAA
TTCATGGCTA TTCTTTAACT TCAATCAATC CTTTCCTCGA TGATTCAAGC CCAAGGGATC ATGCCTTTGT TGATGAGTTC
AGCTGCATAG GCTGCAAAAA CTGTGCAAAT GTAGCCCCTG ATGTGTTTGA AATTGAAGAG GACTTTGGAA GAGCCAGAGC
ATTCAACCAA TGTGGGAACC CTGAATTAGT TCAACAGGCG ATTGACAGTT GCCCTGTTAG CTGCATTCAT TGGACATCTG
CTGCACAACT ATCATTACTT GAAGATGAGA TGCGCCGTGT CGAACGAGTC AATGTTGCCC TGATGCTATC AGGAATGGGA
ACAGCTTCAA TTGATGTTTT CAGAATGGCA AGTTCCAGAT GGGAAAAGAG GCAATCAAAA GTCTTGGAAA AAGCAAAATT
TAGAATGATG AAGCAAGAAG GTTCTGATAA GAAAAGTTCA TACTGGGACA ATCTGTGGGG CAAACAAAAA GAGTACCAAA
GTTCAGATGA GGAAGTTGAA GAAAGAGCAA GAAGAGCTGC TTCAGCAGCA AGAAGATGGA GGGAATACTC AAGGAAGGGT
GTTGATAATC CTCCAACATT TAAACTCCCA GAAGCAAACC CTGCCAAGGA AAAATGA

>Vigan.07G107700.01
MAQLLSPVCM EALKIHNPSL NLCSRGSWRM LVKTPSHCTF VTQSGKRRGS GRVRVTAEDS VSPTDTIADD YYAVLGLLPD
ASPEQIKKAY YNCMKSCHPD LSGNDPETTN FCIFINEVYT VLSDPIQRRI YDEIHGYSLT SINPFLDDSS PRDHAFVDEF
SCIGCKNCAN VAPDVFEIEE DFGRARAFNQ CGNPELVQQA IDSCPVSCIH WTSAAQLSLL EDEMRRVERV NVALMLSGMG
TASIDVFRMA SSRWEKRQSK VLEKAKFRMM KQEGSDKKSS YWDNLWGKQK EYQSSDEEVE ERARRAASAA RRWREYSRKG
VDNPPTFKLP EANPAKEK*