GBrowse Details

Vigan.07G076100.01

Basic Information:
Name: Vigan.07G076100.01
Multiple alignment
Variant Information
Position: Chr07:6103074..6104932 (+ strand)
Length: 1859
Functional Information:
Description: Similar to Casparian strip membrane protein 5. [C6T4E0, Glycine max]
InterPro: Uncharacterised protein family UPF0497, trans-membrane plant subgroup (IPR006459)
Uncharacterised protein family UPF0497, trans-membrane plant (IPR006702)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.69,1.52,0.08,0.00,7.93,0.20,22.34, 0.00
Automatic updates:
Name: NM_001249409 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max casparian strip membrane protein 5 (LOC100527457), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:6103074..6103772 (+ strand)
Length: 699
Type: five_prime_UTR
Position: Chr07:6103773..6104086 (+ strand)
Length: 314
Type: CDS
Position: Chr07:6104285..6104408 (+ strand)
Length: 124
Type: CDS
Position: Chr07:6104497..6104712 (+ strand)
Length: 216
Type: CDS
Position: Chr07:6104713..6104932 (+ strand)
Length: 220
Type: three_prime_UTR

>Vigan.07G076100.01 class=Sequence position=Chr07:6103074..6104932 (+ strand)
ATAACATATG GTACAATTTA ATGAACTGAC ATTACCAATA GCTGAGATTT TTTTTTTTGA ATAAATGTAA TGCTAAAACT
TATGTAGTCT TTCACACGCA AATGTTATAA ATTTATGATA GTTTTAAGAA TGAACTATAT TAGCTATTAG GCCTAGATGG
GAAGTATAAC TAACGACTGA ATAGTTTTAT GTATGACCAA AAACCAAGAC TCAAATTGCG AGCCAAACCA CACCACTTAA
TTCGTGCTTG ATTTATGATA TTATTTTTTG CTTGAATCAT TCCTTGTAGT ATTGTGTTTC GTCTGTATTG CACTACTTGT
CATCACCTGC ACAAATTTGA GATATACGAT ATACAAATGA ATAAATAAAT ATAACTTGAG GTTATTTATT TATTGGTCTT
CGCATTCGTT AGTTTGGTTG GCGGTTTTGT CACATTCGTA TAGGAACGTT ACAGAATCAA GGAAAAATGT TTTTGGTACG
ATGTGGAGCA AGTAAGTTCT GAACAACTCC TTCATTACAC CTTACAGAAT TAGACTTGAC AAAGCAACAG AGATCTTCAC
TAACCAACTC CGTCAACTTT CTTTTATGCA TCTTCTATAT ATATATGTAT ACACAAGTAA CAGCTTCCAC ATTACATAAC
ACAAAAAAAA AATCTCCTTC TCCAGACCTT TGAAAAGAGT ACCTTCCATA TCCATTGTGA TGGACTCAAA GAAAGAGGAT
GCAGCTTCTG CACCTACGAG CCCAGAATCT AGGAGGACCA GGAGCAATGG CAAAGGGAAA ACCATTGCTG AGGCTGCTCC
CCCTGCTGTA ACTGTAGTTT CCACAAAAGC TACCCCATCC CCAAGGGGGA GATGGAGAAA GGGTGCCGCA ATCCTGGATT
TCATCCTTAG GCTCGGAGCC ATTAGTTCTG CTATAGGTGC TGCTGCCGTC ATGGGGAACA ATGAACAGAT ACTTCCATTC
TTCACCCAGT TCTTTCAGTT TCATGTTCAA TGGGATGATT TTCCAATGTT TCAGTAAGTT TGTGTTCCAT AACAAAGATT
GGGTCCAATT TTAAATGTCA CAAAACATTT TCTCTTCATC AGTGCTAGTG CAAATGCTAT GTCACTATAT GTATACCTCT
TTTGGCACAC AAATATACAC ACCAAAAGGA GATCACAAAT CGTTACACTA ATTAGATGCA AATACCATCC TTTTATTTTG
GTGTCGTGCA GGTTTTTTGT ATTTGCAAAT GGAGCAGCAG CTGTATTCCT CATCCTCTCA TTGCCATTTT CAATTGTCTG
CATGGTTCGG CCTTTTGTAG TAGGGCCAAG GCTTCTACTG GTGATCATAG ACATAGTAAG TCTGAATTAA GATAATGCAT
TGACCAACAT GTTTTGTTCT AACAATAATC TCACTCACTC AATAATACTT AAAACTGTTG CAGTTTACAA TGGCTTTGGT
CATGGCAGCT GCTTCGGCTG CTGCAGCTGT TGTGTACTTA GCGCACAATG GGAGCCAAGA TGCCAATTGG ATCGCCATTT
GTCAGCAGTA CACTGACTTC TGTAAGGTCA CTAGTGAAGC TGTGGTGGCT TCTTTCGTTG CTGCGGTTTT CTTAATTTTC
TTGATCGTGC TCTCCTCTGT GGCTCTCAAA AGGCGTTGAA AAGAGAATTT GGATGGTAAT GGTGGTGCTT CATAGAAGCT
TCTATTGTAT TTGTATAATA TTATTGTAAA GTTGCAAGAG TTTGAGGTGT AAATGATGTG TGTCTGTGTT ACATTAAAGT
GAAAAATCAT GTTCAAGTTT GTTTGTAAAA CAAATTCCAC GTTGCAAATC TGAGACCAAG GTTAAAAAGT CCTCCTTCTC
AACTCAAGCT TTAATTTTT

>Vigan.07G076100.01
ATAACATATG GTACAATTTA ATGAACTGAC ATTACCAATA GCTGAGATTT TTTTTTTTGA ATAAATGTAA TGCTAAAACT
TATGTAGTCT TTCACACGCA AATGTTATAA ATTTATGATA GTTTTAAGAA TGAACTATAT TAGCTATTAG GCCTAGATGG
GAAGTATAAC TAACGACTGA ATAGTTTTAT GTATGACCAA AAACCAAGAC TCAAATTGCG AGCCAAACCA CACCACTTAA
TTCGTGCTTG ATTTATGATA TTATTTTTTG CTTGAATCAT TCCTTGTAGT ATTGTGTTTC GTCTGTATTG CACTACTTGT
CATCACCTGC ACAAATTTGA GATATACGAT ATACAAATGA ATAAATAAAT ATAACTTGAG GTTATTTATT TATTGGTCTT
CGCATTCGTT AGTTTGGTTG GCGGTTTTGT CACATTCGTA TAGGAACGTT ACAGAATCAA GGAAAAATGT TTTTGGTACG
ATGTGGAGCA AGTAAGTTCT GAACAACTCC TTCATTACAC CTTACAGAAT TAGACTTGAC AAAGCAACAG AGATCTTCAC
TAACCAACTC CGTCAACTTT CTTTTATGCA TCTTCTATAT ATATATGTAT ACACAAGTAA CAGCTTCCAC ATTACATAAC
ACAAAAAAAA AATCTCCTTC TCCAGACCTT TGAAAAGAGT ACCTTCCATA TCCATTGTGA TGGACTCAAA GAAAGAGGAT
GCAGCTTCTG CACCTACGAG CCCAGAATCT AGGAGGACCA GGAGCAATGG CAAAGGGAAA ACCATTGCTG AGGCTGCTCC
CCCTGCTGTA ACTGTAGTTT CCACAAAAGC TACCCCATCC CCAAGGGGGA GATGGAGAAA GGGTGCCGCA ATCCTGGATT
TCATCCTTAG GCTCGGAGCC ATTAGTTCTG CTATAGGTGC TGCTGCCGTC ATGGGGAACA ATGAACAGAT ACTTCCATTC
TTCACCCAGT TCTTTCAGTT TCATGTTCAA TGGGATGATT TTCCAATGTT TCAGTTTTTT GTATTTGCAA ATGGAGCAGC
AGCTGTATTC CTCATCCTCT CATTGCCATT TTCAATTGTC TGCATGGTTC GGCCTTTTGT AGTAGGGCCA AGGCTTCTAC
TGGTGATCAT AGACATATTT ACAATGGCTT TGGTCATGGC AGCTGCTTCG GCTGCTGCAG CTGTTGTGTA CTTAGCGCAC
AATGGGAGCC AAGATGCCAA TTGGATCGCC ATTTGTCAGC AGTACACTGA CTTCTGTAAG GTCACTAGTG AAGCTGTGGT
GGCTTCTTTC GTTGCTGCGG TTTTCTTAAT TTTCTTGATC GTGCTCTCCT CTGTGGCTCT CAAAAGGCGT TGAAAAGAGA
ATTTGGATGG TAATGGTGGT GCTTCATAGA AGCTTCTATT GTATTTGTAT AATATTATTG TAAAGTTGCA AGAGTTTGAG
GTGTAAATGA TGTGTGTCTG TGTTACATTA AAGTGAAAAA TCATGTTCAA GTTTGTTTGT AAAACAAATT CCACGTTGCA
AATCTGAGAC CAAGGTTAAA AAGTCCTCCT TCTCAACTCA AGCTTTAATT TTT

>Vigan.07G076100.01
ATGGACTCAA AGAAAGAGGA TGCAGCTTCT GCACCTACGA GCCCAGAATC TAGGAGGACC AGGAGCAATG GCAAAGGGAA
AACCATTGCT GAGGCTGCTC CCCCTGCTGT AACTGTAGTT TCCACAAAAG CTACCCCATC CCCAAGGGGG AGATGGAGAA
AGGGTGCCGC AATCCTGGAT TTCATCCTTA GGCTCGGAGC CATTAGTTCT GCTATAGGTG CTGCTGCCGT CATGGGGAAC
AATGAACAGA TACTTCCATT CTTCACCCAG TTCTTTCAGT TTCATGTTCA ATGGGATGAT TTTCCAATGT TTCAGTTTTT
TGTATTTGCA AATGGAGCAG CAGCTGTATT CCTCATCCTC TCATTGCCAT TTTCAATTGT CTGCATGGTT CGGCCTTTTG
TAGTAGGGCC AAGGCTTCTA CTGGTGATCA TAGACATATT TACAATGGCT TTGGTCATGG CAGCTGCTTC GGCTGCTGCA
GCTGTTGTGT ACTTAGCGCA CAATGGGAGC CAAGATGCCA ATTGGATCGC CATTTGTCAG CAGTACACTG ACTTCTGTAA
GGTCACTAGT GAAGCTGTGG TGGCTTCTTT CGTTGCTGCG GTTTTCTTAA TTTTCTTGAT CGTGCTCTCC TCTGTGGCTC
TCAAAAGGCG TTGA

>Vigan.07G076100.01
MDSKKEDAAS APTSPESRRT RSNGKGKTIA EAAPPAVTVV STKATPSPRG RWRKGAAILD FILRLGAISS AIGAAAVMGN
NEQILPFFTQ FFQFHVQWDD FPMFQFFVFA NGAAAVFLIL SLPFSIVCMV RPFVVGPRLL LVIIDIFTMA LVMAAASAAA
AVVYLAHNGS QDANWIAICQ QYTDFCKVTS EAVVASFVAA VFLIFLIVLS SVALKRR*