GBrowse Details

Vigan.07G053300.01

Basic Information:
Name: Vigan.07G053300.01
Multiple alignment
Variant Information
Position: Chr07:3796288..3801912 (+ strand)
Length: 5625
Functional Information:
Description: Similar to Ras-related protein RAB8-5. [Q8W3J2, Nicotiana tabacum]
GO: Biological Process: GTP catabolic process (GO:0006184)
Biological Process: intracellular protein transport (GO:0006886)
Biological Process: nucleocytoplasmic transport (GO:0006913)
Biological Process: signal transduction (GO:0007165)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Cellular Component: membrane (GO:0016020)
Molecular Function: GTPase activity (GO:0003924)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily (IPR001806)
Ran GTPase (IPR002041)
Small GTPase superfamily, Rho type (IPR003578)
Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, Ras type (IPR020849)
Small GTPase superfamily, ARF type (IPR024156)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:43.98,33.05,47.56,37.85,57.73,41.42,57.74,39.30
Automatic updates:
Name: BT098247 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-16F13 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:3796288..3796494 (+ strand)
Length: 207
Type: five_prime_UTR
Position: Chr07:3796583..3796640 (+ strand)
Length: 58
Type: five_prime_UTR
Position: Chr07:3796641..3796713 (+ strand)
Length: 73
Type: CDS
Position: Chr07:3797542..3797614 (+ strand)
Length: 73
Type: CDS
Position: Chr07:3797703..3797803 (+ strand)
Length: 101
Type: CDS
Position: Chr07:3800563..3800628 (+ strand)
Length: 66
Type: CDS
Position: Chr07:3800726..3800823 (+ strand)
Length: 98
Type: CDS
Position: Chr07:3801251..3801313 (+ strand)
Length: 63
Type: CDS
Position: Chr07:3801396..3801488 (+ strand)
Length: 93
Type: CDS
Position: Chr07:3801590..3801667 (+ strand)
Length: 78
Type: CDS
Position: Chr07:3801668..3801912 (+ strand)
Length: 245
Type: three_prime_UTR

>Vigan.07G053300.01 class=Sequence position=Chr07:3796288..3801912 (+ strand)
CTAATCCTTG TGTTCTGGTC AATAAAAAAT TCCCAAACTT TTTATTATAA AATAAATACA ACAAAATTAA ACATCGCTCT
TCTTCTTTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTAAAAATCT CCGCGGTCCT TCCGTTGAAC
TTTGGAGATC CCTCTCCCTC CCATTTTTCC TTTCCATTTC GGATCTGGTA CTCTCTCTCT TGCATTTCAT TTTCATTTTT
TGATTTCTCA TTATTTTCTC ATTTTTCTTT AATTTTATTT GGGGATTGAA TGCAGATACT TGGGAATACG AACTATAGTT
TTGAAATCGT GAGAGATTCA TCGATCGAAG TTGATGGCGG CTCCACCGGC AAGGGCTCGT GCGGATTACG ACTATCTCAT
AAAGCTTCTC TTGATCGGCG ATAGTGGTAG GTTGCTCACC TTCTCGCCTA TTTTTTTTTT TTCGTTTTTT CTCGATTTTT
TTTCGGTGTT TGTATGTAAT GAGAAAACAT AAATAACGTT GCAATTCTCT GCGAACAAAT GAGGTGATTC TCTGCGTAGC
TTTTTCTTTT TAACTGGATT TGTTGAATTG GATTTTCATG ATAGTGTATT TAATTTTAGA GATTGTATAT TTTCGTGATC
TAGCTTGTGC GAGTGTTTGA ATCATTGTTT CTGTTACTAC GATACGTTCA CGATGTTGAG TTGCAAATTC TGTTTGATCG
TGGTATGTAT TTGTTGGACA AATTCTCTTT ATTATTGTAT GTAGTCAGGC CTCTCTGTAC CTTGACAATT ATTTGTTTCA
TTGCAACATG TACTAAATTT GGACGCGTGT TTGGGTTATT CTACAGAATA GTAGCCTTTT TTCTTCAGCT TCGTGAGAGA
GTTTTTTCTT TTTTTTAGTG GTTATTTAGT GGGAAAAAAC AGACCGAAAG CGTGGTATCG GAAGTTGCTT TTTAGCTTTG
TTTTTTTGCA CACTTATAAT CTGCTTGCTC CTCATGAACG AAGCGATATG ACTTCAGTCG GCGTTTCACA CGAACTTTTT
TCCTGTGCCT TGATTGCTTA CTGCGTTATA TATGCAATAG ATATAGATCC TTCCACCCTC TCTGTTTAGT TTGTCAGAGG
ATGAATGAAT GGAATAAAAG TAATTGCATA AATAAATGAA AAATAATGTG GACATAGAAA TTCCAAGAGG GGTGCACTGT
GTACAAATTC CTTAATTTTT TTTTTCACGA ACCCTTTTCT GTTATTGGTT TCAGGTGTGG GAAAGAGTTG CCTTCTTCTA
CGATTCTCCG ATGGTTCTTT CACAACTAGT TTCATCACAA CCATAGGGTG AGTTTTCACA ATTTCGGACT AAAATTGTAG
AATCTTGTGT GCCAGAAGTT TCCTTAACAT CACTAGGTCT ACCCTCCCGG TGCAGCATTG ATTTTAAGAT AAGAACCATT
GAGCAGGATG GAAAACGGAT CAAGCTCCAA ATTTGGGATA CTGCTGGTCA GGAGCGGTTC CGAACAATTA CAACTGGTAA
GATTTATGAT CCTTGTAGAT TATAGGTACA AGTGTCATTG AAAAGTAAAG AACCCCAACC ATTTTAAGGA TAATGTAGTT
TAGGAGTTAG AATGTAGTTA TACTCTGATT AAAAAAATCA ATAGTTGAGA TTTTAACAAC TACTGTTGTT GTTATTGTGT
TATAAATGGG CATGCATTTT ATTATAATTT CAACTGTTGA TGTGCTCCTC CTCACTTGTT TAAAGCCAAA TCCCAAAAAG
GATGGGACTG ACTATAATGG GAAGTTCAGA GTTCAAATTC TAAGATAATT CTTAAACCAA CAATTAAGCC CAAAATAGCA
TATGCCTAAT AACACAAAAG TCTTATTCCA CTAATTGAAG TTAGTTACAT GGATCACGCA GCACCATTCA ATATGCTTAA
AGGCGAAATG TTCATATATA TTATTTACCA TGAGATCTCC CTTAACAATT TTCTCCAGTG TCCTTCTTGG TCTCCCTCTC
TTCCTTTCCA CAAACTATAA ACATGCAATC TACTATCTTT ATTGGTGCTT CTACGAATGT ATAATTCACC TTAACCGATT
TTGCGTCATC TTTTCCTTGA CTGGTGCAAT CATTTCATAT TATCCTTTAT TGACATACCA CACATCCATC TTAACATTCT
CATTTTGGTA TTCTCACATT TTTTTTCTTG TTCTCCTTTT AAAGTTTAAC AAAAACTATC CATAAATTAT ATGGAATCTA
TAAAACTTGT CTGTGGTTGG TAGATACTTT GCTATAAATA ATAACCCTCA ACCGTTTTCT CCAATTGATC ATCCCGCATG
TATCTTGTGG GCTACATTTT CATTAATTTC GTAATCATGT TGATGTATTG ATCCTGGATA TTTAAACATA GATACCTCTG
GTATTAGTAT TACATCTCTC TCTTTTACTT CCGAGTCATA TTCTCCATAT CTTGCTAAAA TCCTAATTCA TATATACTCT
ATCTTGTGCC TACTTAAATA AATGCTGCGT GTCAAAAGTT TGTAACAAAA GCTGACGTTT AAAGTACTGT TTTACTTAAT
TTCTCAATCA AAACTTTGTC CTTCTTGGTA AGCACATCAA AGAAACGAAT ATGTAACTAA GGATTTAAGG CTTAACCTTG
ATGTAATCTT ACTTTCAAGG GAAGTCCTTA GTGTCTCCTC TTGAAATTCT AATAGTCACC TCATTATATT CTAATAGTCA
CCTCATTATA GAGGTCTTGT ATATGGTTCG GATATAAGTC ATGCAAACGT CTTCCTTTTC CAAACTCTTT CACAACACTT
CTCTTGATCA TCCGTAAGCT TTTTCCGAGT TTATAAAAAT CATACGTAAG TTTTTCCTTT CCTTCAATTC TCATAAAATG
ATATTTAGTC TTAAGTTGTA AATTTCCAGT CTCTTTTATT AATTTGTCTA TGCTTAATCA CCTTTCTTTC ATAATTTCAT
AGTATGAGTA TAAGTTTTAT ATTTATGTAA ATTGTGGTTA ATAAAACTCT GAAATATATA TCTCGTTCTT AAGTATAGGA
ATCAAAGTGC TTCCTCCACT GACGTTTCAT TTTCTTATAC CTTACACTCT TATTCATTAA ATAACCCAGT GACTTAAATG
TTCTCGTACA CACTTTCTAA CATAATAGGG CCTATCGTCT AGTCAACAAC TTTATCACTA TTCATCTTCT TAGGGAACAC
TTGTGTGTTT CCAATCCAAA GAATTTGATA ATAAGCCAAA TTATGTCTCT ACTTTTGGAT TTTTAGTCCT TTATTATGAG
GTGATTCCTG TCCTGTACAT CATTGAAAAA CTAATTCTCT CACCTCTTTT TGATATTCTG ATCTATGATT AAACTTTCTC
CTTTTCATCC TTGATACATC TCACGATACA AATGTCTTGT TTTCCTTTAT TTTTGACAAA CTTATAGGTC TTATGTTCTC
CATATTTTGT ACTGAAATAT TCGTAAAACA CTTCAAAAGC TTTAGATCGT GCTTCATTCA CAGCTTCTCT CCCCTCATTT
GTATAGTTTT GATACATTTT CCACTTTTCA AAGTTATTGC ACTCGTGTAA AGCTTTAAAG CGTATACTTT TGTTTGTTTG
GATCCCACCA CAGATTTCTT ATCTTTTAGA CCTAAAACCT TTTGACAGTT TAAATCCTGT AGCATATAAC TCTGTAGCTT
TTTCTACAAC ACATTTGATT GATTTCTCGT ATGCATGTTT GATGTTAGTC AAAATTCAAG CACTTTTGAA CTAGTTTCTT
TACCCACATC TGTCTAGAAA ACGTGAGAAT CTTTGTTCAT TTAAATCTGG ATGGCTTTAA CCATGCGACA CATTGGATCT
GGGAAATGAC CTAGCATGAG CAAAACTCTG TTGTGAGTGA CCTAACTCGA CCCTCTTCCA CTACCGAGCC TGGAATTGGC
TACAAAACCA TACATAGACA AAATTATTCC ATGCCCAAGT CTTAAAATAA AACAGTCTTT TCTTGCTGTT TGGGTTCCAC
TTTCTTGATT GCCAACCATG TGAAACATGC CAGTAAAATA GTTTTTGGGA ACGTGTCCCT GTGGATATCA GTGATTAATG
TGAATATGTG ATTCAATACT GGGGTACACT TCCAGCTTTT CTGTCGGGTG TGTTAAATTA CTCATCCATT TGAATGGGTA
CTGTTTCATT GCTGTAACTC TAGAATTCTT TTATTCTTTG TTGATTTCCA ATGTTTATGC CAGTTTGAGT ATCTGTCAAT
GTGCCAACCC TTTGTTAAAT TTCCTATTTT TTCAGCTTAC TATCGTGGTG CTATGGGCAT ATTGCTTGTG TATGACGTTA
CAGATGAGTC TTCGTTTAAC AGTAAGTTCC CTCCTGTTTT TTGGTTCAAA ATTTCAAGGT GTCTTTTTCT CTTCAAAGGG
TTTCTCATGG AATATGACCC AGCTTATACC AATTTCAGAT ATCGGGAATT GGATTCGTAA CATTGAGCAG CATGCCTCAG
ACAATGTTAA CAAGATACTT GTGGGGAACA AAGCCGACAT GGATGAAAGC AAAAGGGTAC GCAAACATCT GGAACCTTTC
TCCTTCAGTT ATTTTGGAAC TTCGATGCAC CTATTTTGAC CAGATCCAAC TCAATGGAAC TAAAGAAATG ATATATTATT
ATCTTAAAAT ATACATTTTT CTCACTAGTA TGCAAGAGTT GGTTGCTTCA TAATGCAGCA TGTTTGTTTG AGATTTAACC
CACATACCAG TCATCTGAGC ATCTGTTTGC CAATCCAAAA GTTTTAACAA ATATGTTTCA TGGTGTTGTG TTAGAGGAAC
CGCGTCTTAG ACAAGTAGGG AGTAAAACAT TTTTTTTTGA GGTTGAGCGC ATAAGAGATG ACTTCTTATT GACGCCATTA
GTATCAGTAA CGTCTTCCTG TCCACTCTAC TATTTGTCAA ATATTAGATT TTTGGATTCA TACATATCTG CTTTTATTTC
TAGGCTGTGC CTACCTCCAA GGGACAAGCA CTGGCCGATG AGTATGGAAT CAAATTCTTT GAAACAGTAA GTATTGCACA
CATTAAAATG TGGAAACTTC CTTAATTTTT GTTACTATCA CCTACTGAAA AAAAAAATTC TATTCCAGAG TGCAAAGACA
AATCTAAACG TGGAGGAAGT TTTCTTCTCG ATTGCAAAAG ATATAAAACA AAGGCTTGCT GACACTGACT CTAAGTCAGA
GGTATTTGAA TTTCTTATTC CTTGAATTCA AAGAAAAATA TATTTATATT GATATCTTTT TCTCCATCAT GTTGAATGTG
TCGCAATATA TATTCAATGC AGCCAGCAGG AATTAAAATC AACCAACAGG ATCAAGCAAC GGCTGGGGAA GTTGCACAAA
AGTCAGCTTG CTGTGGTTGA GGAGGCAGCG TTATTGTCCA AGAACAAGAA GGAAGGAGGA AAATACATGT ATGATGATGA
TAAATTGATG ATGATTCGTG CTTTGCATTT CACGCTGTCA TTCTTTTATA GTTTCTTTCC TAGATGTTAT TATATATTAA
TTCAAAGCTA GATATGATTG TCTTTGCGCC TTGTGTTTGG TTGGGCCACA AATCCAATGA TCATTGATAT TTTGAATGGT
TAATTGCATT TATATTCTTT AAAAC

>Vigan.07G053300.01
CTAATCCTTG TGTTCTGGTC AATAAAAAAT TCCCAAACTT TTTATTATAA AATAAATACA ACAAAATTAA ACATCGCTCT
TCTTCTTTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTAAAAATCT CCGCGGTCCT TCCGTTGAAC
TTTGGAGATC CCTCTCCCTC CCATTTTTCC TTTCCATTTC GGATCTGATA CTTGGGAATA CGAACTATAG TTTTGAAATC
GTGAGAGATT CATCGATCGA AGTTGATGGC GGCTCCACCG GCAAGGGCTC GTGCGGATTA CGACTATCTC ATAAAGCTTC
TCTTGATCGG CGATAGTGGT GTGGGAAAGA GTTGCCTTCT TCTACGATTC TCCGATGGTT CTTTCACAAC TAGTTTCATC
ACAACCATAG GCATTGATTT TAAGATAAGA ACCATTGAGC AGGATGGAAA ACGGATCAAG CTCCAAATTT GGGATACTGC
TGGTCAGGAG CGGTTCCGAA CAATTACAAC TGCTTACTAT CGTGGTGCTA TGGGCATATT GCTTGTGTAT GACGTTACAG
ATGAGTCTTC GTTTAACAAT ATCGGGAATT GGATTCGTAA CATTGAGCAG CATGCCTCAG ACAATGTTAA CAAGATACTT
GTGGGGAACA AAGCCGACAT GGATGAAAGC AAAAGGGCTG TGCCTACCTC CAAGGGACAA GCACTGGCCG ATGAGTATGG
AATCAAATTC TTTGAAACAA GTGCAAAGAC AAATCTAAAC GTGGAGGAAG TTTTCTTCTC GATTGCAAAA GATATAAAAC
AAAGGCTTGC TGACACTGAC TCTAAGTCAG AGCCAGCAGG AATTAAAATC AACCAACAGG ATCAAGCAAC GGCTGGGGAA
GTTGCACAAA AGTCAGCTTG CTGTGGTTGA GGAGGCAGCG TTATTGTCCA AGAACAAGAA GGAAGGAGGA AAATACATGT
ATGATGATGA TAAATTGATG ATGATTCGTG CTTTGCATTT CACGCTGTCA TTCTTTTATA GTTTCTTTCC TAGATGTTAT
TATATATTAA TTCAAAGCTA GATATGATTG TCTTTGCGCC TTGTGTTTGG TTGGGCCACA AATCCAATGA TCATTGATAT
TTTGAATGGT TAATTGCATT TATATTCTTT AAAAC

>Vigan.07G053300.01
ATGGCGGCTC CACCGGCAAG GGCTCGTGCG GATTACGACT ATCTCATAAA GCTTCTCTTG ATCGGCGATA GTGGTGTGGG
AAAGAGTTGC CTTCTTCTAC GATTCTCCGA TGGTTCTTTC ACAACTAGTT TCATCACAAC CATAGGCATT GATTTTAAGA
TAAGAACCAT TGAGCAGGAT GGAAAACGGA TCAAGCTCCA AATTTGGGAT ACTGCTGGTC AGGAGCGGTT CCGAACAATT
ACAACTGCTT ACTATCGTGG TGCTATGGGC ATATTGCTTG TGTATGACGT TACAGATGAG TCTTCGTTTA ACAATATCGG
GAATTGGATT CGTAACATTG AGCAGCATGC CTCAGACAAT GTTAACAAGA TACTTGTGGG GAACAAAGCC GACATGGATG
AAAGCAAAAG GGCTGTGCCT ACCTCCAAGG GACAAGCACT GGCCGATGAG TATGGAATCA AATTCTTTGA AACAAGTGCA
AAGACAAATC TAAACGTGGA GGAAGTTTTC TTCTCGATTG CAAAAGATAT AAAACAAAGG CTTGCTGACA CTGACTCTAA
GTCAGAGCCA GCAGGAATTA AAATCAACCA ACAGGATCAA GCAACGGCTG GGGAAGTTGC ACAAAAGTCA GCTTGCTGTG
GTTGA

>Vigan.07G053300.01
MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIEQD GKRIKLQIWD TAGQERFRTI
TTAYYRGAMG ILLVYDVTDE SSFNNIGNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TSKGQALADE YGIKFFETSA
KTNLNVEEVF FSIAKDIKQR LADTDSKSEP AGIKINQQDQ ATAGEVAQKS ACCG*