GBrowse Details

Vigan.07G050500.01

Basic Information:
Name: Vigan.07G050500.01
Multiple alignment
Variant Information
Position: Chr07:3588513..3591633 (+ strand)
Length: 3121
Functional Information:
Description: Similar to outer envelope pore protein 16, chloroplastic-like. [XP_004487008.1, Cicer arietinum]
InterPro: Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 (IPR003397)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:114.05,65.55,23.26,63.37,35.30,128.0 3,39.00,35.82
Arabidopsis thaliana homolog: AT2G28900.1
Automatic updates:
Name: NM_001251226 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499674 (LOC100499674), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251226 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative outer envelope pore protein 16-1, chloroplastic (LOC100499674), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:3588513..3588978 (+ strand)
Length: 466
Type: five_prime_UTR
Position: Chr07:3588979..3589083 (+ strand)
Length: 105
Type: CDS
Position: Chr07:3589163..3589214 (+ strand)
Length: 52
Type: CDS
Position: Chr07:3589488..3589519 (+ strand)
Length: 32
Type: CDS
Position: Chr07:3589799..3589832 (+ strand)
Length: 34
Type: CDS
Position: Chr07:3589924..3589991 (+ strand)
Length: 68
Type: CDS
Position: Chr07:3591164..3591304 (+ strand)
Length: 141
Type: CDS
Position: Chr07:3591305..3591633 (+ strand)
Length: 329
Type: three_prime_UTR

>Vigan.07G050500.01 class=Sequence position=Chr07:3588513..3591633 (+ strand)
AGAGACTGCA GAAACAAGCT TGAAGATAAT CGGATACTTG AAATCTTACT TCGGGACTAG TTAGTAAAAT ACTAAACCTA
GAAAACTGTT TTCCAGACAT CAATATTGAA TAATAAGTAT TTAGTTAACC TTAGAAAACA CGAAAAGCAA TCTAAAATGT
TTAATTTTTG TCGATTAAAG TAATTTCTTT TTGTTAATAG TTTGAATTAG CAGTAAATGA TATGATTAAG TAGTAATTTG
TGGTTGTTGC TCATAAAGAT GCTAACTTTT TTGTTGGTCA CTTTTCTTCC GTTGATTCAA TAAAAGAGTT GAAAAGGGAA
AAAGTTTGAG ATGAAAATGA TATTTGGGTA GGAGCCAATG AAGTGACAGG CGGTGAATCT GAACACTATC TGAGTTCTTC
TGGCTATGCA TGTGAATTGA ATGAACCCCA AAACAAAAGC AAGAGAATTT AAGAAGAGGG TGAAAGATGG CATGGGTAAG
GGTTTCAGGG CCTCCTAGGG TTGAAGTAGC CATTGACATG GGCAATCCAT TTCTCAATCT CACAGTTGAT GCTTTCCTCA
GGATCGGAAC CGTAATTTTC TCACCCTTTT CTCTTTCTTT TCTAAATTCG TTAATTAATT ATTTTACTAT TTATTTATTT
TGTACTCCAG ATCGCAGCCA CGCGCGCAGG TGCTGAAGAT ACCTATCATA TTATCCAAAA GAGTAAGTAA GCATTTCATA
TATTCATCAC TATCATCATC ATCATCGCTT TTCTTCCGGA GCCTGAATAG GTAACTTTTT CATTGATATC TATAATCACG
TTTTCAGTTT TTTCCTTTTT GAATTTGGGT TACGGTTATA CACTTACGTG CAAGTGTTTT ACTTTGCGTC TTCCGTGGTG
TCGCTTCAGT GTTCCTACTT CTTTAGTTTT AAATTATTAT TGCTATTTTC GTCTGTGAAG GCCTTTGTCA GACTAATTCA
ACATGTCTGT TCCAGGGAAT ATCTCGAGTC ATGATTTTGA GAAAACGGTA AGTTCACAAT TTAACGCAGT GATTCGCTAT
CAGTTCTTTT TTTGTGAAAT TGATCTTTTC AAATGTAAAG ATTCAGTCCA ATTTTGGTGT ATACTGTTGT TGTCACTTTT
TAACATAACC GACAATTGGA TTCTCTTCTT CCTAACCTTT CAATCGTGCT ATCAATCTTG TGCTAAAAGT ATAATGCTAG
GACGACGGAA AATGATAACA TGGGAAACCT ATTCAATAGA CATTTTCAAT TCCTTGCTCA CGAGGTGTTG GTTGTTTTTT
TTGCAGTTGA AGAAGATGTG TAAAGAAGGT GTATATTGGG GTAAGACTTG GGTTGCGAGG TCTATGTAAT TGGGCATATT
CATTTGAAAA AAGCAATTGC TCCATTGATG TACTTTTTTT TATGCTTACA GGAACTGTAG CTGGCTTTTA TGTTGGAACC
GAATATGGGG TAGAGAGGAT CCGTGGCACT AGGGACTGGG TAATTCTCTC CAACATGATG ACATGTAATT TGATTACAAA
AGTCAGGGTG TTATAACAAG CAGTATGTTT GGCTCTAAAT AGATCTAGTC CTAAACTGGG TATTGTATTA GATTTAGAAA
AATACCCACT TCGGTATACC TTGAGAGGCT GGAAACTTAG AATATATAGA GATTATGTTT AGCTAAGCTT TTCAATAAAA
AAACTTATGG GAAGTTTAAA CTAACTTATA ATCAAGTTGT GGCAAAGAGT ACCGTGGACT AGCTCTTTAT GTGGTTTATG
AGGAACCAAT TATATCTATC ATTAGATTCA TCTGATCTTC TTGTTTGCAT CCTATACCAC CCGCAGTGAT TCTCTTCCCT
ATATCCCTTT CTCTCTCTTC CTCATAACCA GAAAACTTTT CAACTCACTT TTTCTGACCT CTTCCTTCTC CCCCATTGAG
CCCAAACCCA TCCTCTTCAG AAAATCCATC AACCACAACT ATGCAACCAA CTTCTCTTTC AACCCTTTTC ACTTATCCTG
ACCTCTTTTC AACTCCTCTT CTCTGACAAT ATATTCTTTA TTTTGACTTT CCAATTTTTG GGTTTCTTGT ATGATTGATT
AAATTGTTAC ATTTGTTGTG GCTGGATGCA AATAGTAAAC AGGGACAAAA TACAAGAGAC TACGGTGGCA CCATAAGGAA
ACAGTAGACA TTGCCATTGA AGGTGGAGAA TAATCCATTT GGATGAACAC AAATTAACTT AGTAGGAGAA AAGGGAAGAA
TTGCCTCCAC CAGAAATTGC TTCTGGTAGC AAATGGTGGT CGAAATAAGT GTTGGGAATG GAAGTGGTTG GTGAAGAAGT
AGAAAGACAC GATCTAATGT TGGAGAAGTA GGATATGTGT TAACATTTTA AATTATGTAA TGGTGTAGAC AATCTATAAA
GATGCACGGT AGCCTTCACC ATAAGTTTAT TTACAAAAGT TCCCTCGTTT ACTTTAGCTT TTCCAAAAGT TGATTTAGTT
CATAATTAGA TATAATAATT AAAAAATGAA TTTGTGAAAA TTGGGAGTCA AAGGAATTTT CACTTTTTGA TTTAGGTGTA
CTCCATTGTT CAATTGCAAT TTTATTTTTT ACTTGAATTC TTACTGAAGC ATTTTTCTTG TTTCCTTGGA CTTGGATTGA
ATGTACTGCA GAAGAATGCC ATGATTGGGG GTGCAGTAAC TGGGGCCGTG GTATCTGCCG TCAGTAACAA CAAGAAAGAC
AAGATTGCAA TAGATGCCAT TACGGGGGCA GCAATTGCTA CTGCTGCAGA GTTCATAAAT TACCTTACTT GAATGAATGA
AAATTGATGT GTTACTAGTT TTCTTGCATG TTTTGGAAAG GGATAGCACA TTCAGTCTCT CTTGTCATGT GTACCAGTTC
CGTTTTGATA TTGGTGCAGT TACTTCTAAG TATGTTATTT ATTTACTCAG CTTTCAGTTA AACCTATGTT TTTATCTTAT
ATTGGTCAAT TACTTGTTCC GTATGGTAAT AGCTCGTCGT TGCAATTTAG TAAAGCTAAG CTTGAGTGTT CAGGCTGAAG
AGGTTTAGGA ATTTAGCCCT TTTATGCTGA CCGGTGAATC AATTTCGCGT ATGCGTTACT ATATATGGCT TCAGATTTTC
A

>Vigan.07G050500.01
AGAGACTGCA GAAACAAGCT TGAAGATAAT CGGATACTTG AAATCTTACT TCGGGACTAG TTAGTAAAAT ACTAAACCTA
GAAAACTGTT TTCCAGACAT CAATATTGAA TAATAAGTAT TTAGTTAACC TTAGAAAACA CGAAAAGCAA TCTAAAATGT
TTAATTTTTG TCGATTAAAG TAATTTCTTT TTGTTAATAG TTTGAATTAG CAGTAAATGA TATGATTAAG TAGTAATTTG
TGGTTGTTGC TCATAAAGAT GCTAACTTTT TTGTTGGTCA CTTTTCTTCC GTTGATTCAA TAAAAGAGTT GAAAAGGGAA
AAAGTTTGAG ATGAAAATGA TATTTGGGTA GGAGCCAATG AAGTGACAGG CGGTGAATCT GAACACTATC TGAGTTCTTC
TGGCTATGCA TGTGAATTGA ATGAACCCCA AAACAAAAGC AAGAGAATTT AAGAAGAGGG TGAAAGATGG CATGGGTAAG
GGTTTCAGGG CCTCCTAGGG TTGAAGTAGC CATTGACATG GGCAATCCAT TTCTCAATCT CACAGTTGAT GCTTTCCTCA
GGATCGGAAC CATCGCAGCC ACGCGCGCAG GTGCTGAAGA TACCTATCAT ATTATCCAAA AGAGGAATAT CTCGAGTCAT
GATTTTGAGA AAACGTTGAA GAAGATGTGT AAAGAAGGTG TATATTGGGG AACTGTAGCT GGCTTTTATG TTGGAACCGA
ATATGGGGTA GAGAGGATCC GTGGCACTAG GGACTGGAAG AATGCCATGA TTGGGGGTGC AGTAACTGGG GCCGTGGTAT
CTGCCGTCAG TAACAACAAG AAAGACAAGA TTGCAATAGA TGCCATTACG GGGGCAGCAA TTGCTACTGC TGCAGAGTTC
ATAAATTACC TTACTTGAAT GAATGAAAAT TGATGTGTTA CTAGTTTTCT TGCATGTTTT GGAAAGGGAT AGCACATTCA
GTCTCTCTTG TCATGTGTAC CAGTTCCGTT TTGATATTGG TGCAGTTACT TCTAAGTATG TTATTTATTT ACTCAGCTTT
CAGTTAAACC TATGTTTTTA TCTTATATTG GTCAATTACT TGTTCCGTAT GGTAATAGCT CGTCGTTGCA ATTTAGTAAA
GCTAAGCTTG AGTGTTCAGG CTGAAGAGGT TTAGGAATTT AGCCCTTTTA TGCTGACCGG TGAATCAATT TCGCGTATGC
GTTACTATAT ATGGCTTCAG ATTTTCA

>Vigan.07G050500.01
ATGGCATGGG TAAGGGTTTC AGGGCCTCCT AGGGTTGAAG TAGCCATTGA CATGGGCAAT CCATTTCTCA ATCTCACAGT
TGATGCTTTC CTCAGGATCG GAACCATCGC AGCCACGCGC GCAGGTGCTG AAGATACCTA TCATATTATC CAAAAGAGGA
ATATCTCGAG TCATGATTTT GAGAAAACGT TGAAGAAGAT GTGTAAAGAA GGTGTATATT GGGGAACTGT AGCTGGCTTT
TATGTTGGAA CCGAATATGG GGTAGAGAGG ATCCGTGGCA CTAGGGACTG GAAGAATGCC ATGATTGGGG GTGCAGTAAC
TGGGGCCGTG GTATCTGCCG TCAGTAACAA CAAGAAAGAC AAGATTGCAA TAGATGCCAT TACGGGGGCA GCAATTGCTA
CTGCTGCAGA GTTCATAAAT TACCTTACTT GA

>Vigan.07G050500.01
MAWVRVSGPP RVEVAIDMGN PFLNLTVDAF LRIGTIAATR AGAEDTYHII QKRNISSHDF EKTLKKMCKE GVYWGTVAGF
YVGTEYGVER IRGTRDWKNA MIGGAVTGAV VSAVSNNKKD KIAIDAITGA AIATAAEFIN YLT*