GBrowse Details

Vigan.07G048000.01

Basic Information:
Name: Vigan.07G048000.01
Multiple alignment
Variant Information
Position: Chr07:3379247..3380877 (+ strand)
Length: 1631
Functional Information:
Description: Similar to Uncharacterized protein. [I1MDD2, Glycine max]
GO: Biological Process: metal ion transport (GO:0030001)
Biological Process: transmembrane transport (GO:0055085)
Cellular Component: membrane (GO:0016020)
Molecular Function: metal ion transmembrane transporter activity (GO:0046873)
InterPro: Zinc/iron permease (IPR003689)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.72,0.00,0.19,0.08,12.71,2.20,583.0 5,0.34
Automatic updates:
Name: NM_001317485 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max zinc transporter 1-like (LOC100788541), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001317485 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max zinc transporter 1-like (LOC100788541), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:3379247..3379343 (+ strand)
Length: 97
Type: five_prime_UTR
Position: Chr07:3379344..3379959 (+ strand)
Length: 616
Type: CDS
Position: Chr07:3380213..3380604 (+ strand)
Length: 392
Type: CDS
Position: Chr07:3380605..3380877 (+ strand)
Length: 273
Type: three_prime_UTR

>Vigan.07G048000.01 class=Sequence position=Chr07:3379247..3380877 (+ strand)
CAAATCATGA GCTACTACTT AATTTAGTTA ATTAGACCAT ACATTTACGA ACACCATACA AAGGATAATC GACACAATTA
AGGAACATAA TTAACAAATG AAGACCATAA AGTCAACGTT CCTCGTTGTG TGTCTCTTGG CCGCTCTCGT CTGTCCAACC
AAGGCTCACG GAGGAGGTGG TGATGATTCT CACGATGATG ATTCCCACAG CGAAGATTTA CATGCCAAGA GTCTGATCCT
TGTCAAAATA TGGTGTTTGA TCATCTTCTT TGTGAGCACT TTCGCTGGTG GGGTCTCTCC GTATTTCTAC CGATGGAACG
AGACTTTTCT TCTTTTGGGG ACTCAGTTCG CTGCTGGGGT TTTCTTGGGA ACCTCTTTGA TGCATTTCTT GAGCGATTCT
AACGACACCT TCCGAGACCT GACCACAAAA TCTTACCCTT TTGCCTTCAT GCTCGCCTCA TCTGGCTACC TTCTCACCAT
GCTTGGTGAC TGCGTTGTCG TTTTTGTCAC CAGCAATAGC AAGAGGGAAG CCAAAGTGTT GGAACTGGAA GGTGGGACAA
CACCACAGGA TCATGACCTA GCTGGAAATC ACTGTGCAGT GGACACCACA AACCCTATGT TATTGAAGAC TTCTTCTGTG
GGAGACACCA TTCTTCTCAT CCTTGCACTG TGCTTCCATT CGATTTTTGA GGGCATTGCA GTTGGAGTTG CAGGTATTCC
CTCCCTCACC AAGTAATAAA TAAACTTTGA TTGTGTTTTG GTGAAGATTA TTTATCATCT CAGATCATGT TAACTGAGAT
TACAGATCTT TAAAAGTAGT CATCATAAAC AGGCGACAAA AACAAGAAAC ATTAATTTTC TCAAATCTAA TATTTTCATG
TTGTTCATTT CCTGGCACAC ATACATAAAA GTTTGATGAT TATCTGTTAT GGTGTGATTC TAATTGAAGT TGTTTACCTA
ATCAAGGTAC TAAAGCGGAT GCATGGAGGA ACTTATGGAC AATATCCTTA CACAAGATAT TTGCTGCCAT TGCAATGGGA
ATTGCTTTGC TGAGGATGTT ACCTAAGAGA CCCTTAGTAA CAACTGCAGC ATATTCTTTC GCCTTTGCTA TCTCAAGCCC
CATCGGTGTG GGGATTGGCA TTGCCATAAA CGCTACAACA CAAGGACGCA CAGCAGATTG GATGTTTGCT ATAACAATGG
GTATTGCTTG TGGGGTGTTT ATCTATGTTG CCATCAATCA TTTAATATCC AAAGGCTTCA AACCGCAGAA ACCAACGCGT
TTCGACACTC CCTGGTTTAG GTTTCTCGCT GTGCTTTCTG GTGTAGCTGT TATGGCAGTT GTCATGATCT GGGACTGATC
GTCATCTTCT TTCAATTCCT GTTTTTCTTT GTCCGCTAAC GTTGTTCTAC GAAAATGTGA GTGTGACAAC AAGGTGAATG
TTTACCATTA TATACATGTA TGTTCGCAAT ATTTAATGTT GATTTATACT ATTTTCACTC TCAACTTATA TATAATATCT
TGTTCCTTTG TATTATATAT TATTATGTGA AAGTAATTTC CATGTTCAAT TATCAAATAA TGTGCTTTTG ATCTGATTTT
AATGCTTTGT ATTAGTTAGC TTATGTGTGT C

>Vigan.07G048000.01
CAAATCATGA GCTACTACTT AATTTAGTTA ATTAGACCAT ACATTTACGA ACACCATACA AAGGATAATC GACACAATTA
AGGAACATAA TTAACAAATG AAGACCATAA AGTCAACGTT CCTCGTTGTG TGTCTCTTGG CCGCTCTCGT CTGTCCAACC
AAGGCTCACG GAGGAGGTGG TGATGATTCT CACGATGATG ATTCCCACAG CGAAGATTTA CATGCCAAGA GTCTGATCCT
TGTCAAAATA TGGTGTTTGA TCATCTTCTT TGTGAGCACT TTCGCTGGTG GGGTCTCTCC GTATTTCTAC CGATGGAACG
AGACTTTTCT TCTTTTGGGG ACTCAGTTCG CTGCTGGGGT TTTCTTGGGA ACCTCTTTGA TGCATTTCTT GAGCGATTCT
AACGACACCT TCCGAGACCT GACCACAAAA TCTTACCCTT TTGCCTTCAT GCTCGCCTCA TCTGGCTACC TTCTCACCAT
GCTTGGTGAC TGCGTTGTCG TTTTTGTCAC CAGCAATAGC AAGAGGGAAG CCAAAGTGTT GGAACTGGAA GGTGGGACAA
CACCACAGGA TCATGACCTA GCTGGAAATC ACTGTGCAGT GGACACCACA AACCCTATGT TATTGAAGAC TTCTTCTGTG
GGAGACACCA TTCTTCTCAT CCTTGCACTG TGCTTCCATT CGATTTTTGA GGGCATTGCA GTTGGAGTTG CAGGTACTAA
AGCGGATGCA TGGAGGAACT TATGGACAAT ATCCTTACAC AAGATATTTG CTGCCATTGC AATGGGAATT GCTTTGCTGA
GGATGTTACC TAAGAGACCC TTAGTAACAA CTGCAGCATA TTCTTTCGCC TTTGCTATCT CAAGCCCCAT CGGTGTGGGG
ATTGGCATTG CCATAAACGC TACAACACAA GGACGCACAG CAGATTGGAT GTTTGCTATA ACAATGGGTA TTGCTTGTGG
GGTGTTTATC TATGTTGCCA TCAATCATTT AATATCCAAA GGCTTCAAAC CGCAGAAACC AACGCGTTTC GACACTCCCT
GGTTTAGGTT TCTCGCTGTG CTTTCTGGTG TAGCTGTTAT GGCAGTTGTC ATGATCTGGG ACTGATCGTC ATCTTCTTTC
AATTCCTGTT TTTCTTTGTC CGCTAACGTT GTTCTACGAA AATGTGAGTG TGACAACAAG GTGAATGTTT ACCATTATAT
ACATGTATGT TCGCAATATT TAATGTTGAT TTATACTATT TTCACTCTCA ACTTATATAT AATATCTTGT TCCTTTGTAT
TATATATTAT TATGTGAAAG TAATTTCCAT GTTCAATTAT CAAATAATGT GCTTTTGATC TGATTTTAAT GCTTTGTATT
AGTTAGCTTA TGTGTGTC

>Vigan.07G048000.01
ATGAAGACCA TAAAGTCAAC GTTCCTCGTT GTGTGTCTCT TGGCCGCTCT CGTCTGTCCA ACCAAGGCTC ACGGAGGAGG
TGGTGATGAT TCTCACGATG ATGATTCCCA CAGCGAAGAT TTACATGCCA AGAGTCTGAT CCTTGTCAAA ATATGGTGTT
TGATCATCTT CTTTGTGAGC ACTTTCGCTG GTGGGGTCTC TCCGTATTTC TACCGATGGA ACGAGACTTT TCTTCTTTTG
GGGACTCAGT TCGCTGCTGG GGTTTTCTTG GGAACCTCTT TGATGCATTT CTTGAGCGAT TCTAACGACA CCTTCCGAGA
CCTGACCACA AAATCTTACC CTTTTGCCTT CATGCTCGCC TCATCTGGCT ACCTTCTCAC CATGCTTGGT GACTGCGTTG
TCGTTTTTGT CACCAGCAAT AGCAAGAGGG AAGCCAAAGT GTTGGAACTG GAAGGTGGGA CAACACCACA GGATCATGAC
CTAGCTGGAA ATCACTGTGC AGTGGACACC ACAAACCCTA TGTTATTGAA GACTTCTTCT GTGGGAGACA CCATTCTTCT
CATCCTTGCA CTGTGCTTCC ATTCGATTTT TGAGGGCATT GCAGTTGGAG TTGCAGGTAC TAAAGCGGAT GCATGGAGGA
ACTTATGGAC AATATCCTTA CACAAGATAT TTGCTGCCAT TGCAATGGGA ATTGCTTTGC TGAGGATGTT ACCTAAGAGA
CCCTTAGTAA CAACTGCAGC ATATTCTTTC GCCTTTGCTA TCTCAAGCCC CATCGGTGTG GGGATTGGCA TTGCCATAAA
CGCTACAACA CAAGGACGCA CAGCAGATTG GATGTTTGCT ATAACAATGG GTATTGCTTG TGGGGTGTTT ATCTATGTTG
CCATCAATCA TTTAATATCC AAAGGCTTCA AACCGCAGAA ACCAACGCGT TTCGACACTC CCTGGTTTAG GTTTCTCGCT
GTGCTTTCTG GTGTAGCTGT TATGGCAGTT GTCATGATCT GGGACTGA

>Vigan.07G048000.01
MKTIKSTFLV VCLLAALVCP TKAHGGGGDD SHDDDSHSED LHAKSLILVK IWCLIIFFVS TFAGGVSPYF YRWNETFLLL
GTQFAAGVFL GTSLMHFLSD SNDTFRDLTT KSYPFAFMLA SSGYLLTMLG DCVVVFVTSN SKREAKVLEL EGGTTPQDHD
LAGNHCAVDT TNPMLLKTSS VGDTILLILA LCFHSIFEGI AVGVAGTKAD AWRNLWTISL HKIFAAIAMG IALLRMLPKR
PLVTTAAYSF AFAISSPIGV GIGIAINATT QGRTADWMFA ITMGIACGVF IYVAINHLIS KGFKPQKPTR FDTPWFRFLA
VLSGVAVMAV VMIWD*