GBrowse Details

Vigan.07G046900.01

Basic Information:
Name: Vigan.07G046900.01
Multiple alignment
Variant Information
Position: Chr07:3333842..3335831 (- strand)
Length: 1990
Functional Information:
Description: Similar to transcription elongation factor B polypeptide 1-like isoform X2. [XP_004507152.1, Cicer arietinum]
GO: Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511)
InterPro: SKP1 component (IPR001232)
BTB/POZ fold (IPR011333)
SKP1 component, POZ domain (IPR016073)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:83.64,41.34,51.66,57.78,68.20,77.78,54.49,37.66
Arabidopsis thaliana homolog: AT5G59140.1
Automatic updates:
Name: NM_001248584 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305702 (LOC100305702), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249830 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500097 (LOC100500097), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:3333842..3333987 (- strand)
Length: 146
Type: three_prime_UTR
Position: Chr07:3333988..3334066 (- strand)
Length: 79
Type: CDS
Position: Chr07:3335399..3335504 (- strand)
Length: 106
Type: CDS
Position: Chr07:3335595..3335706 (- strand)
Length: 112
Type: CDS
Position: Chr07:3335707..3335831 (- strand)
Length: 125
Type: five_prime_UTR

>Vigan.07G046900.01 class=Sequence position=Chr07:3333842..3335831 (- strand)
CGTCCAAAAA GGCCGGGATC AAAGCCCTTC CTCCCATAAA ACTTGAGTTT GAAAATGCGA ACTCTGACGT TCCGGCCATA
ATCGATTGTG GTTAAACGCA AGGTGAAGGA GGCGAGAATC AGAAGATGAA GAAGGAAGAC ACAGTAAAAC TGATCAGCGC
GGAGGGTTTT GAATTTGTGG TCGACAAAGA AGCTGCAATG GTTTCACAGA CCATACATAA CATGCTTACT TCTCCAGGTT
TGATATTATG TTTTATTAAA TTGCCCCTTT TCACCGCAAT TAGGGTTCCA AATTTCATTA TACACATAAT GATCGTTTCT
TTCACAGGGA GTTTCTCTGA GAGGCAGCAC GGCGAAGTTA CCTTTCCCGA GATTAGTACC ACCATTCTGG AGAAGATTTG
CCAGTACTTT TATTGGCATC TACAATTTGC CAGGTTTTCC TTTTTCTCTC TTCGCTGTTG CAACATTGCC GAATACGATG
TTTCTTTCGT TTTTTACTAG TCATTTAATA TGATTTTTCT TTCGTTTTTT ACTAGTCATT TAATATGATG TTTCTTTCGT
TTTTTACCAG TCATTTAAGT GTGTAATGAA TATGAATTTT GGTGTATCAA AGCCTTAAGT GTATTTTCAG TTATTCACAA
TTCATGGTAG GTTGTATTGG GAGCAACCTA TTACCTTGAC ATGCAATAGT GATGTTATTG AATTTCCTCC CAACAACGGA
GTGGGTAATG GGTCTGCCGA GTTCTACTTA CTGCCAATTA GCTACAAAAT AGATCCATAG TGTTTGACTT TGCGGATCAT
TTTTTTTAGT TTTTGGTTCT CAGAGAAAAA GAATTTTCCT GAGTACTGAA GTGCAGCGTA ATGACAGCGC CTTGATGAAA
TCGTGTAAAT TGTGACATAA AGATCTAGTA TTTAGCATGT TTAATAACCA TTTTGCTAGT TAGTCTGTGC ATAAACAATA
CACATTCCGT TCAATTTTGA TTTGTGCATA TCATTATGAG GTAGTTTTGT GTCAGCACAA AAGTTTGGAT CATTCAGAAC
TGTGAGGAAG GTGACTATAG TTAGTTGAAT TATTTGATTC TATGAAGTAA TCCTGGATTA TAAGCTTTAC AGTGTACAAA
ATTCTTTTAT TATGTTACCT TCTTCCATCA TGCATATCAA TCTTTGCTCA ATTCTGAGTT CCCATTTTGT GTGTAGTATA
GCTGCATATT CACTCACATC CAATTTTTTT ATAAATGGTT TAAATATTTA CTTCAAAGAA GGCTCCGGGG GAGGATGACC
TCCGTATTGT GTACCTTTTT TGAGTGTTTT ATGAAAAGAA GAAATAGTGG AACGAATTGA TTATAACAAC TACAAGTTGG
ACTACACTTG AGTGAAAAAT AATTGAAGAA CCAAAATTCA CACTTTGTGG GAGACTAAAG ATGCAAATTA ATTATAGTTT
ATCCAAGGGT GAAACAATGT CATTGATCGT TGAACTAGTA TATTGTCGCT TTTCTATATT TTAAAATAGT CATGCATTAT
TTATAATTTT GAAATTACTG TGCAATTTTA AAATATTATT ACATAGTTTT ACCAATTTAA GTGGTTGTCC ACTCATTTAG
TAAAATATCA GTAGATTGCT GTGATCGGAT GAGTATGATT GATAGTTTTT GTTTTGCAAG TATTATATTA CTTTGGGAAA
CTTTGATCCG AAATCTCTCA TTTTATCTCG TGCTAATGTC TATGAAAATA GCTGTATTAT TGACTTGAGA TGTTGCTCTT
TCTAGTGGGA AGGAAACGGA ATTTCCCATT GAACCTGAGT TAACTCTAGA GCTAATGATG GCTGCCAATT ACCTCCATAC
ATAAGCATTT TACTTCCCCA AGGTGATAGT TCTTCGTCCT CATCGTAAGC CTATATTATT CTCCTGGAGT CTAACAAATA
ATAGTAGTAT TTTTTGTCAT GTTGATTTTT GCTGTTTTTG TTCATGCAGA TGGAATTATT ACTTGGTTAG 

>Vigan.07G046900.01
CGTCCAAAAA GGCCGGGATC AAAGCCCTTC CTCCCATAAA ACTTGAGTTT GAAAATGCGA ACTCTGACGT TCCGGCCATA
ATCGATTGTG GTTAAACGCA AGGTGAAGGA GGCGAGAATC AGAAGATGAA GAAGGAAGAC ACAGTAAAAC TGATCAGCGC
GGAGGGTTTT GAATTTGTGG TCGACAAAGA AGCTGCAATG GTTTCACAGA CCATACATAA CATGCTTACT TCTCCAGGGA
GTTTCTCTGA GAGGCAGCAC GGCGAAGTTA CCTTTCCCGA GATTAGTACC ACCATTCTGG AGAAGATTTG CCAGTACTTT
TATTGGCATC TACAATTTGC CAGTGGGAAG GAAACGGAAT TTCCCATTGA ACCTGAGTTA ACTCTAGAGC TAATGATGGC
TGCCAATTAC CTCCATACAT AAGCATTTTA CTTCCCCAAG GTGATAGTTC TTCGTCCTCA TCGTAAGCCT ATATTATTCT
CCTGGAGTCT AACAAATAAT AGTAGTATTT TTTGTCATGT TGATTTTTGC TGTTTTTGTT CATGCAGATG GAATTATTAC
TTGGTTAG

>Vigan.07G046900.01
ATGAAGAAGG AAGACACAGT AAAACTGATC AGCGCGGAGG GTTTTGAATT TGTGGTCGAC AAAGAAGCTG CAATGGTTTC
ACAGACCATA CATAACATGC TTACTTCTCC AGGGAGTTTC TCTGAGAGGC AGCACGGCGA AGTTACCTTT CCCGAGATTA
GTACCACCAT TCTGGAGAAG ATTTGCCAGT ACTTTTATTG GCATCTACAA TTTGCCAGTG GGAAGGAAAC GGAATTTCCC
ATTGAACCTG AGTTAACTCT AGAGCTAATG ATGGCTGCCA ATTACCTCCA TACATAA

>Vigan.07G046900.01
MKKEDTVKLI SAEGFEFVVD KEAAMVSQTI HNMLTSPGSF SERQHGEVTF PEISTTILEK ICQYFYWHLQ FASGKETEFP
IEPELTLELM MAANYLHT*