GBrowse Details

Vigan.07G037900.01

Basic Information:
Name: Vigan.07G037900.01
Multiple alignment
Variant Information
Position: Chr07:2665703..2670589 (+ strand)
Length: 4887
Functional Information:
Description: Similar to RNA-binding ASCH domain protein, putative isoform 1. [XP_007033872.1, Theobroma cacao]
InterPro: ASCH domain (IPR007374)
PUA-like domain (IPR015947)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.42,56.65,5.85,9.19,5.41,3.32,12.24,11.23
Arabidopsis thaliana homolog: AT2G43465.1
Automatic updates:
Name: NM_001255311 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100807259 (LOC100807259), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:2665703..2665778 (+ strand)
Length: 76
Type: five_prime_UTR
Position: Chr07:2665779..2665983 (+ strand)
Length: 205
Type: CDS
Position: Chr07:2666119..2666315 (+ strand)
Length: 197
Type: CDS
Position: Chr07:2666400..2666460 (+ strand)
Length: 61
Type: CDS
Position: Chr07:2666691..2666739 (+ strand)
Length: 49
Type: CDS
Position: Chr07:2667451..2667505 (+ strand)
Length: 55
Type: CDS
Position: Chr07:2667597..2667684 (+ strand)
Length: 88
Type: CDS
Position: Chr07:2667936..2668054 (+ strand)
Length: 119
Type: CDS
Position: Chr07:2668421..2668546 (+ strand)
Length: 126
Type: CDS
Position: Chr07:2668695..2668782 (+ strand)
Length: 88
Type: CDS
Position: Chr07:2669809..2669963 (+ strand)
Length: 155
Type: CDS
Position: Chr07:2670249..2670308 (+ strand)
Length: 60
Type: CDS
Position: Chr07:2670309..2670589 (+ strand)
Length: 281
Type: three_prime_UTR

>Vigan.07G037900.01 class=Sequence position=Chr07:2665703..2670589 (+ strand)
AAATTTCATA ATTAAATATT CCACGAAATT CAACCAAAGA AAGTAATACA GTAGTAGCGA CAGAATTGAG CGGAAAATGG
ACAAGAAAGG CAGTGTTTAC GATGAAAATG GTGATCGGTG TTCGTTTCCG GTGAAACTGG GTGATTGTTT AGAAGAACTT
GTTAGGTTCA GTTTCAGTTC TCGCTCTCAC CATCTCAATC TTTCATCCCA ATTCTGCTCC ACTCTTCTCA AAGATGACCC
AACATACCCA TCATCCTCAC ACTCACAATT ACAACCACAT GGTACTTACA TACAATTCTG TTTTGTGTGT TTTCAGTTGA
AGATGTTTTT TTTTATGTGT ATCCTCGAAT AACCGTCCAA ATTCTTGAGT CAAACAGTCA ACCCAACATA TATGCGTCTT
TGGACTCTTT TTGCAGATTC TTTGGAAGGA GTGCCACCGT ATCCCTTATA CAAGCGTCTG CCTTCAGCTC TGTTGAGGTG
TATTGATTCT GGAACGTTTT GTAGGACAGG CAGCAATTTA GCCATGGGCC ATGAATTTGA AGATTCTTCC ATACAGCAGA
AACAACAACA GTGGCAAAAA TTGATTCTGG AGAAGGGGTT TGAAATAGGA AACGTAAATA ATGCTGTGTT AACTGATCCA
TTTGTCCACT TTGTTGACTG CATACGCTTG TTTCAGTATA TTGTTTTGTT TCCACAGGTT TTGAAGGGTG TTTCCTTTGA
ACTCCACGTC CAAGAGCCTT TCTTTTCACA GCTAACTGGT ATTTGTAGTC TGTACTTTAT TTGAATATGA TGAAGTTCTA
TGTAATCAGG TCTGGAAATT ATGTGTTCTT GCTGAACCGT GTTGCCGGGT AGAAAATTTA TCTATTGCCA CTTAAAGGAA
GAATAAAAAC TGCATCGAAA GTACCTTGAT TATCAGAACA GGACATTCTC ATTCCTGCTG CAATTTATGT GTACTAAGTC
TTATGGAGTA TGATTTTATT TCCTGCAGAT GGCCTAAAAA CAATTGAAGG GAGGTGTGCT AGTGGGAAGT ACAATAGGTT
CAATTTATTT ACTTTTAATT AAAAATATGT TCTTAAATAT GCACAACCGT AATCTTATTT CAATTTTTCA CCATCCAGTC
ACATTTCCTC CACTATAAAA GAGTGGCATA CTACCATGCA TGTGATTCAA ATTGAGTTAG TCCTAGACCA ATTAAATGAT
GTGGTCTGAA TTTTTGGAAC TGAGTCTTCT AGATGTAAAA TACATATGAA AGTAGTATTG GGTAATCAAT TGGAGGCAAA
GTCAACCAAC TGAACAAACA GCTGGGTTAT TTGTGAATTT TCATGTCAAG AACAGAATTC GAAAGGGTTT GTGGCTTCAA
TTAGTATGGG CTGAATTCTT TAAGATTTGG TTGTGAAGAC GTGAGATGTT TGATTCTTCC TTTGGCCACA TAACCCATCC
CTTATCTAGG TGCTAGTCCT TCCAATATAA CAAAAGAAAA ATGGAATCAA ATGCCTTTCT CACCTGTCTA GAGAGCAAAA
TTATGTGATA TTTTCATATT TTCTAAGTTC TATCAAAATA AGCTGCATAA CAAAGTCCAG AAATGCATTT AATACGATAC
TATATCATAG TCCCTGAGCC ATATCATATG GACTGTCCTT GGATATTATC TCTGTTAATA TTTTTCTACC AATCTACTAT
GAGCTATAGA AGGCCATTTT ACTTTTAATT TTTTCATTTA TCGTTCTAAC TCCTAATTTG GTTTCTAGGA TTAAATCAGG
AAATCTGATT CTCTTTAACA AGTCTGTGGT TTTCGAAGTT CAGGTACTGC TTTGTGTTGT TAATAATTTG CTTTATTCTG
TAATGGTTTT TGTTTGCATT TCTCTCTTAA CTGCATTAAT GCTTTGCTGT GTAGGGAGTA AGACGGTATC CAACATTCTT
TGCCATGTTA GAGGCAGAAA GCCTTGGAAA AGTTCTTCCA GGAGTTGAAA GTGGGGAAGA AGGTACTGCA TATCCTTCTT
ATAGACAAAG AAGGGGAATC GGATTGTGTA TCTACTAGAC AAATAGCCAT TGTAAGAGTT ATTCAATTCC AAATGAACAA
ACTAAGTACC TCAAAGTGGT TATTTGTTCT CAAAATTGTG TTTATAATCC TGAAAGTTTT TAAGATGAAA GAAACACCAT
TTAATCTGTC TTAGCTTAAT CAATTCCAGA CTTATATGGA TTCTTCCAGA ATAACACTTG GATAGCATTA CAGGTGTAAA
AGTCTACCGG AGGTTCTACA CAGAGGAGCA GGAACATGAA AATGGTGTTC TTGCAATCAT TGTTTCAAAA TTCACCCCTC
AACCATACGA TTCTTTGGCT AGCTTATTCT GTGTGGGCTC AATTTCCTTT GATACCATAT TAACTTTTCT GTTATTTGAT
TTGAAAACCA TCTATAACTC TAAAAAGGCT GATTCCACTT TGAGTATACA TGATTAATTA TTGGTTTGAT GTTGTCTTTG
ATTTGCGAAA GTTCAATACT AAACCTATGA TCATAGTATT TATTTCATAT GCAGAATAAC AATGGTTAAC TTAGTCATCA
GTAATTATTC ACTGATCTGT TGCATAAGAG GGACAGAACC CGTACCATAA CTGCTGATGC ATTCATACTT ACATGTGTTC
ATGGCATTAC TCAAGTTTTC TCGTATAGAA ATTCTTTAGT ATAGTTTCTG ACTATTGTAT TGTCCTACTT TTGTATAGGG
ATTAAGCTAT GAAGGTGTTC AAGGCCTTCT AGGTCTGATG CAGACCACAG GGACAATTTC TGATGCATTA CCTCCGCCAA
TATCAACTCT ATTAGCCTCT TTTAATTTTC CCTGCAATCC AAATGTAAGA ACCTTAAGAA CAACTGCTCC ACATTAATAA
CGACTGCTAA GATTCTGGAG AACTTTTCAC TGTTTTTGCT ATAATAATTT TTTTTGGTCG GATGATGCTA TTAGTCAAAT
TATATATGCC CACTTATATG ACCAGTATTC AGGAAAATGG CTTGACTCAT GGAGCTCGTG CGTTGGCCAA GCATGCTTGT
AGGAGTATCG GTAGTTATTG GGGTTCTCTA AATGGAAACG GTAAGGATTC TTTTTCTTTA AAATGAAATA TTTTAGATAT
ATGTTTGTAA TTTCCTTTTG ATTTTGATGC CTTGGTTGTC TATGTTTGTT GGCTCATGGA ATCTGTTTCC CATAGAAGAA
TTTGATAAGG TTTAAAAGTG GAACTTAATG GAATTACAGA GTACACACAA TTTTGGTAGA TGAACTTTCC AACCAGCCTT
ATCCAAGGCT CTTCTCTGAG AAAACAATTC TCAGTTCTGA TTACCAGAAC AACAAAATGA GCATGAAACA GTGTTAATCA
TGTTGGGAAA ACTCCCCAAC CAAAGGAATG ATAATAGGAA CACATTCACA ATGAAAAGAA AATGATATAC ACAACATTGG
TTCGACATCT GTTGCCTATG ACTCTTTAAG CACTCCAGTA AAGTATCCGC TATCTCAAGG AGATTGTAAG TTTTTTGTGA
AACTTGAAAA CCTTTTCATT TCACAAGAGA CTCTCCACTT AAGTGACCTC TCATACTTGT GGATTCCTCA CTCTTCTCTT
GAATTCGAAT GCATTAATTC TTCACTAGAC CACCTACTCT TCACATTCCC AAGACCCTTG AAAAGTCACA TCTCTTGTAC
TAGGAGCCTT GAATGAATTT CATAATCGAA CAACTTAACC GTAATCCTTC TTTATTTCTA ACAAAACATA ATTCACATTG
TCAAAAAGAG AAACAAAACA TACTTTCTGT AACTACACCA CATACAATTA AATAACTCCT ACATAATTGT CCTACTATAC
TATTTCCCTA CGGCTACCCT ACATAACTAC GCCACATTCA ATTAGTTAAC TACAACAATA TCCGTGTTTT GAGCTTTCTC
TTGGCATGAT CCAAAACCAG GCAGACATCT AGACTTTGGG CTCAAACAAA ATTTGTCTGA AGATTTTATC CGAGTTAGCT
TCACTATGTT TGCTGGAATG GTTAATGAAC GTATTAATAG TGTGCACTGC TTTCACATAA CTTGATCATG TTTTCACTGG
TCCTGTCTTT TTCAATGTTC TTCTAGATTC TAATAAAAAT AGGCTTGCAA AGGATGCCAT TAACCGCTTA ATATCACATT
GTTGTTGGCT GAATGTGCAT ACTGTCCCAC CGCATGGAGT TGTCTTTGAA ATAAGGGTTG CCGATGGATA TGGTGCCCGC
TGGAATGAAG ATGGAAGTAA GGTGTGTGGA TACCCACTAA GTTTTGGTAT TTATCTGCTT CCATTACTGG TTAATGCATG
GTATACCGTC CTATCTTGTC TCGTAACTTA AAGTATGAAA AATATGTTCA ACCTTCATTT TGATGTAACT ACTGTTAGAC
TCATCTAATA TTCAATGGCT GGGAGTAAGG TTAAACCTGG AGAGAAAAGT TTGTACTTTT CAACTTGCAG GGTTCATTTT
TAGCAAGCAC TTGTCAATTT AAAATAAATT CTTAACCTAC TTCTTTTCAA TGTTTTTTAT TTTCAGTTTA TCGGATTTTT
AGAGCCTTAC ATGCAAGATG GTCACTCAAA GGGATGGAAG CACTAGTTAT GCTAGCTAGA CCACAGCAAC TGCAGCTTTG
TAATTGAACG TCACAACTTT TCCTTTTTTA TCGTTTGATG GAGCTGTGTT ATGGTACAGT ATTTGTTTTT TATCTCTTGA
CTGTAGCTAA CACTCTAGCC TATATCTGAG AGTAATCTAC TTAAGGAGAC TTCTGTATAT AGATAGAGGG TGGAGTCAGT
ATAAATGCTA CTTGTTTCAT CTTGTACTTT CCAGAAGAAG TGTCCGTTTA GCCCAACTTG ATCATTAAAA TATGCTGACA
AGTTCCA

>Vigan.07G037900.01
AAATTTCATA ATTAAATATT CCACGAAATT CAACCAAAGA AAGTAATACA GTAGTAGCGA CAGAATTGAG CGGAAAATGG
ACAAGAAAGG CAGTGTTTAC GATGAAAATG GTGATCGGTG TTCGTTTCCG GTGAAACTGG GTGATTGTTT AGAAGAACTT
GTTAGGTTCA GTTTCAGTTC TCGCTCTCAC CATCTCAATC TTTCATCCCA ATTCTGCTCC ACTCTTCTCA AAGATGACCC
AACATACCCA TCATCCTCAC ACTCACAATT ACAACCACAT GATTCTTTGG AAGGAGTGCC ACCGTATCCC TTATACAAGC
GTCTGCCTTC AGCTCTGTTG AGGTGTATTG ATTCTGGAAC GTTTTGTAGG ACAGGCAGCA ATTTAGCCAT GGGCCATGAA
TTTGAAGATT CTTCCATACA GCAGAAACAA CAACAGTGGC AAAAATTGAT TCTGGAGAAG GGGTTTGAAA TAGGAAACGT
TTTGAAGGGT GTTTCCTTTG AACTCCACGT CCAAGAGCCT TTCTTTTCAC AGCTAACTGA TGGCCTAAAA ACAATTGAAG
GGAGGTGTGC TAGTGGGAAG TACAATAGGA TTAAATCAGG AAATCTGATT CTCTTTAACA AGTCTGTGGT TTTCGAAGTT
CAGGGAGTAA GACGGTATCC AACATTCTTT GCCATGTTAG AGGCAGAAAG CCTTGGAAAA GTTCTTCCAG GAGTTGAAAG
TGGGGAAGAA GGTGTAAAAG TCTACCGGAG GTTCTACACA GAGGAGCAGG AACATGAAAA TGGTGTTCTT GCAATCATTG
TTTCAAAATT CACCCCTCAA CCATACGATT CTTTGGCTAG CTTATTCTGT GGATTAAGCT ATGAAGGTGT TCAAGGCCTT
CTAGGTCTGA TGCAGACCAC AGGGACAATT TCTGATGCAT TACCTCCGCC AATATCAACT CTATTAGCCT CTTTTAATTT
TCCCTGCAAT CCAAATGAAA ATGGCTTGAC TCATGGAGCT CGTGCGTTGG CCAAGCATGC TTGTAGGAGT ATCGGTAGTT
ATTGGGGTTC TCTAAATGGA AACGATTCTA ATAAAAATAG GCTTGCAAAG GATGCCATTA ACCGCTTAAT ATCACATTGT
TGTTGGCTGA ATGTGCATAC TGTCCCACCG CATGGAGTTG TCTTTGAAAT AAGGGTTGCC GATGGATATG GTGCCCGCTG
GAATGAAGAT GGAAGTAAGT TTATCGGATT TTTAGAGCCT TACATGCAAG ATGGTCACTC AAAGGGATGG AAGCACTAGT
TATGCTAGCT AGACCACAGC AACTGCAGCT TTGTAATTGA ACGTCACAAC TTTTCCTTTT TTATCGTTTG ATGGAGCTGT
GTTATGGTAC AGTATTTGTT TTTTATCTCT TGACTGTAGC TAACACTCTA GCCTATATCT GAGAGTAATC TACTTAAGGA
GACTTCTGTA TATAGATAGA GGGTGGAGTC AGTATAAATG CTACTTGTTT CATCTTGTAC TTTCCAGAAG AAGTGTCCGT
TTAGCCCAAC TTGATCATTA AAATATGCTG ACAAGTTCCA 

>Vigan.07G037900.01
ATGGACAAGA AAGGCAGTGT TTACGATGAA AATGGTGATC GGTGTTCGTT TCCGGTGAAA CTGGGTGATT GTTTAGAAGA
ACTTGTTAGG TTCAGTTTCA GTTCTCGCTC TCACCATCTC AATCTTTCAT CCCAATTCTG CTCCACTCTT CTCAAAGATG
ACCCAACATA CCCATCATCC TCACACTCAC AATTACAACC ACATGATTCT TTGGAAGGAG TGCCACCGTA TCCCTTATAC
AAGCGTCTGC CTTCAGCTCT GTTGAGGTGT ATTGATTCTG GAACGTTTTG TAGGACAGGC AGCAATTTAG CCATGGGCCA
TGAATTTGAA GATTCTTCCA TACAGCAGAA ACAACAACAG TGGCAAAAAT TGATTCTGGA GAAGGGGTTT GAAATAGGAA
ACGTTTTGAA GGGTGTTTCC TTTGAACTCC ACGTCCAAGA GCCTTTCTTT TCACAGCTAA CTGATGGCCT AAAAACAATT
GAAGGGAGGT GTGCTAGTGG GAAGTACAAT AGGATTAAAT CAGGAAATCT GATTCTCTTT AACAAGTCTG TGGTTTTCGA
AGTTCAGGGA GTAAGACGGT ATCCAACATT CTTTGCCATG TTAGAGGCAG AAAGCCTTGG AAAAGTTCTT CCAGGAGTTG
AAAGTGGGGA AGAAGGTGTA AAAGTCTACC GGAGGTTCTA CACAGAGGAG CAGGAACATG AAAATGGTGT TCTTGCAATC
ATTGTTTCAA AATTCACCCC TCAACCATAC GATTCTTTGG CTAGCTTATT CTGTGGATTA AGCTATGAAG GTGTTCAAGG
CCTTCTAGGT CTGATGCAGA CCACAGGGAC AATTTCTGAT GCATTACCTC CGCCAATATC AACTCTATTA GCCTCTTTTA
ATTTTCCCTG CAATCCAAAT GAAAATGGCT TGACTCATGG AGCTCGTGCG TTGGCCAAGC ATGCTTGTAG GAGTATCGGT
AGTTATTGGG GTTCTCTAAA TGGAAACGAT TCTAATAAAA ATAGGCTTGC AAAGGATGCC ATTAACCGCT TAATATCACA
TTGTTGTTGG CTGAATGTGC ATACTGTCCC ACCGCATGGA GTTGTCTTTG AAATAAGGGT TGCCGATGGA TATGGTGCCC
GCTGGAATGA AGATGGAAGT AAGTTTATCG GATTTTTAGA GCCTTACATG CAAGATGGTC ACTCAAAGGG ATGGAAGCAC
TAG

>Vigan.07G037900.01
MDKKGSVYDE NGDRCSFPVK LGDCLEELVR FSFSSRSHHL NLSSQFCSTL LKDDPTYPSS SHSQLQPHDS LEGVPPYPLY
KRLPSALLRC IDSGTFCRTG SNLAMGHEFE DSSIQQKQQQ WQKLILEKGF EIGNVLKGVS FELHVQEPFF SQLTDGLKTI
EGRCASGKYN RIKSGNLILF NKSVVFEVQG VRRYPTFFAM LEAESLGKVL PGVESGEEGV KVYRRFYTEE QEHENGVLAI
IVSKFTPQPY DSLASLFCGL SYEGVQGLLG LMQTTGTISD ALPPPISTLL ASFNFPCNPN ENGLTHGARA LAKHACRSIG
SYWGSLNGND SNKNRLAKDA INRLISHCCW LNVHTVPPHG VVFEIRVADG YGARWNEDGS KFIGFLEPYM QDGHSKGWKH
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