GBrowse Details

Vigan.07G015400.01

Basic Information:
Name: Vigan.07G015400.01
Multiple alignment
Variant Information
Position: Chr07:1011702..1014931 (- strand)
Length: 3230
Functional Information:
Description: Similar to cytochrome c oxidase subunit 5b-2, mitochondrial-like. [XP_004486697.1, Cicer arietinum]
GO: Cellular Component: mitochondrial envelope (GO:0005740)
Molecular Function: cytochrome-c oxidase activity (GO:0004129)
InterPro: Cytochrome c oxidase, subunit Vb (IPR002124)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.89,8.83,18.99,10.47,33.87,13.59,11 .59,10.27
Arabidopsis thaliana homolog: AT1G80230.1
Automatic updates:
Name: NM_001250296 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527520 (LOC100527520), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:1011702..1012170 (- strand)
Length: 469
Type: three_prime_UTR
Position: Chr07:1012171..1012224 (- strand)
Length: 54
Type: CDS
Position: Chr07:1013103..1013182 (- strand)
Length: 80
Type: CDS
Position: Chr07:1013296..1013362 (- strand)
Length: 67
Type: CDS
Position: Chr07:1014176..1014226 (- strand)
Length: 51
Type: CDS
Position: Chr07:1014449..1014534 (- strand)
Length: 86
Type: CDS
Position: Chr07:1014627..1014852 (- strand)
Length: 226
Type: CDS
Position: Chr07:1014853..1014931 (- strand)
Length: 79
Type: five_prime_UTR

>Vigan.07G015400.01 class=Sequence position=Chr07:1011702..1014931 (- strand)
GAAGGTTTGA TTAGTGATTT GTTTGACTGG CACGTGCGAC GGGGGTGGCT CACGTGGCAA GGTTGGCCTG TTCTTGAGCA
TGGTTGCGAT TCATATTGAT AGTGTGAGCG AGTATTTGTG CAGTTGGTGT TTGGAAGGAG ACAGAAGAAA ACGAGAAGAA
CGCCATTTCC TCAGATCGAT AACCCTAATC ATGTTGCGGA GATTCCTCTC TCATTCCAAT CTCAAATCTC TACACACGGC
GCTCTCACCT TCTCGTCCCC GATTCGCCGC TCCTCTCCTC ACCCGCCACG TCACTGCTCA ATCAGGTATT CGTTCTCTCC
GTTGATTCCC CGATTGCATT GCACGCTTCT ATTTTAGTTC AATTCAATTT GATTTTAGTT GTTCTTATTC CAATCAGGCG
CTTCTTCCGT TAGAAAGAGG GTCGAAGATG TCGTGCCAAT TGCTACCGGC CACGAGCGTG AGGAGATTCA GGCCAGTCTC
GAGGTATCTT AGACTCTTCC CTTGCAATCA ACATATCAAT CAAATCCATT TATATAACGT GTCTGAAAAA AGGAGGTGGA
CTGATTGTGC GTATTTGAAG AGATTTCTTT GTTGAATATC CTGATTTCTT TTTTTCAATT GTAGTCTGCT CTTAATTTTT
TCAGCTGCTT TTTTAACACT TCAGAGGCAT ATAATTTTTT TTTATTCTGT TTCTTTTTTG TTCAGGGAAG GGATATTCTT
GAAATCAACC ATCCTGAAGG TCCTTTCGGC ACAAAGGTTA GTGTTATTAC CTTTCTAAAT GTGTGCGTTT AATGTTTCGC
ATCGAGTTGT TAAAATTACT ATCCAATGTT GTACTGTGCA GTCTAATTAC TTAAGAGCGT ATGATGAGTA CCCTGTTACT
GTCTTACTGT TCTCTTGTTT CAATTAGTTG TTTTATACCA GAATTATATT TTCACCATAC CCTTATTGTT TAAAATAAAA
TATTTTGATT GGCATAATCT GTACATAAGA AGTCATTAAC AGTGTTAGAT TAAATAATAA AACTGTAAAA ATATGTAGAA
CGCTCAAGTG ATAAAAATGT TGGGACCATT TCTAATTACG ATAATGCCCA CTGAATTTAA TGTATAAGAA ATTCGCTGGA
GCTATTGCTC TGACAGGATT TGTGAAGTGC GACATATGCA TACACACGTA CTGAGTTTAG TGTTGAATCA ATCATCTGTA
GTTGGTTGTA AGATAAAGAT TAAAGAATAA GCATGAGGCT AGAAAATCGA GAGGATCTAT AGCTTGTTGA GCTTTTACCC
AGCCACAATT TGAGGATTTA CTCTGACATT AAACAAAACA CAGACTTAAA CTACAGTTAG AGTTGTCGCT ATGCAACTTG
AATACGAACA GAAGAAATCC TCTTCCTTAT CTCGTATAAA GGGATCTGAT GTCCCGGGCA TTTCTTTTTT TCTTCTCTTC
TTCCTTCTTC CCTTTCGTAA GTGGAAATAT TGTTTTTTAA TAAGTTCTTT TCATTCATGT TTCCCGATAC ATAACTGTTT
TGAAGTATGT CTGATATATG TCTACTTTGT TGTTTGTTTT GGTCGATAGG AAGCCCCTGC TATTGTTAAA TCTTACTTTG
ACAGAAGGAT AATTGGATGC CCAGGAGGTG AAGGTGGTAA GTGTTCGTTG TCTTTCTCCA TGAATCTGTG TGTGAGACTT
GTCATATTCT GATGAAAAAA ATACTAGATC TTGGTATCAT TGTGAGGTGA AATCCCCCTT TTTCTGCAGA AGATGAGCAT
GATGTTGTAT GGTTTTGGCT GGAGAATGGC AAGCCTCATG AATGTCCTGT GTGCTCACAG TACTTTGAGG TAAGTTGGAA
ATCACATTTA GAATCTGTTG ATATTATTGT GACCTACCAT GATATATTTG GTCTTTAGAT GTCAAGATAC GTGATTATGT
AGATTGAAAA TTTTCGAATT GTTTAGATGA TCCTATTAGA TCTGTGTGTC GTGACAAGCC TTGGGCCCCT TTTCATTGTT
ACCCAATATT ATGAATTTCC ATGACATATT GAAGTAAGAT TATCTGACAA TTGGTTTTTG CAGTTATAGC TTGTTACTGT
CTTGTGTGTA TGTGTGATTC CTGCTTTAGA AAAAAACGAC ATTCTAAATT GATGTCTAAC ACGTTAAAAT TTCATAATTT
ATTTTACTTG TATTAACATT TGATTGTCGA TCCGGTTTTA ACCTCAAAAA AAGTGACAAG TCAGAAGGAG CCTTTTTGCC
CCAGAAGCAA TGAAGTTTTG TGGACTTAAT TTGGGTTAAA ATTAAAATTT TAATCATGTT GGATAGGGAA TTTTACAGGA
ACTGATTTGT TGTATTCTGT TAGTGTCACC ACTCACCAAC GCTTCATTTA ATATCTCAGC TGGTATTATG TTTGATTTGG
AGAAACCGTA TGGTGTTTGC CTACATCATA AACACATGCA TAAAAGATGC TCCACCAACT ATAATTCCTC TTCTGGTTGA
ATATATCGCC ACTCCTTCTG GATATGGTTA CGAAGTTGGT GCAAACCATC ATGCTTAGAG CTTTTTTGTT TATGAACTAC
AGCTTGAGAA TTCCAATAAA GTGGACACTG AATAATCTTA AATTGCACTC TCGACACACT TAAAATTCTA GTTGGATTCG
AATGTGTTGC TACTTTGATG GGTGCATTAC TGCCCATTAA AACTAATTAT TTTCTTTTTC TTTACAGCTC AAAGTGGTCG
GACCTGGTGG TGATCCTTAT GGACACGGCG ATCATCATTG ATTTCATCCC GCAATTTTCT TTCAGAAATA AAATTTGCAA
AGAGAAGAGA GACAATTTCA CCTCTCAAAA TTACGAGGCC TCGTTTTGAT TGGTCTATAT ACCTTGCAGT TTTGCGAGTT
TAGAATAGAA ATTTTTTCAG TATTTATTAG ACACAAGCTG GTCATTCGAT TGAGCTATCA AATCCCGCAA GGATGTCTTT
TTTGGCTCTG CCAAATAATT GATAGCAACA CTGATTCTTT GTCGATTCTT GAATATAGAG CCTTCAACTA TTTTTAGCAC
CCCTAAACCA CGAAAGGGCG TAAGGGACTA CAAATGTGAT CGAATTGAAT AATTACTAGC AATGCAGATG GAGACAACTC
AAGTATTTTC CTTTTTGTTA AATTATGCAT ATAACCCTTT GTGCTGGCGT GTTGTAGTTA ACATTTTAAC TTAAGTTTCC
ATAAGATTTC TTAAATGTCG ACTTTTTTTT 

>Vigan.07G015400.01
GAAGGTTTGA TTAGTGATTT GTTTGACTGG CACGTGCGAC GGGGGTGGCT CACGTGGCAA GGTTGGCCTG TTCTTGAGCA
TGGTTGCGAT TCATATTGAT AGTGTGAGCG AGTATTTGTG CAGTTGGTGT TTGGAAGGAG ACAGAAGAAA ACGAGAAGAA
CGCCATTTCC TCAGATCGAT AACCCTAATC ATGTTGCGGA GATTCCTCTC TCATTCCAAT CTCAAATCTC TACACACGGC
GCTCTCACCT TCTCGTCCCC GATTCGCCGC TCCTCTCCTC ACCCGCCACG TCACTGCTCA ATCAGGCGCT TCTTCCGTTA
GAAAGAGGGT CGAAGATGTC GTGCCAATTG CTACCGGCCA CGAGCGTGAG GAGATTCAGG CCAGTCTCGA GGGAAGGGAT
ATTCTTGAAA TCAACCATCC TGAAGGTCCT TTCGGCACAA AGGAAGCCCC TGCTATTGTT AAATCTTACT TTGACAGAAG
GATAATTGGA TGCCCAGGAG GTGAAGGTGA AGATGAGCAT GATGTTGTAT GGTTTTGGCT GGAGAATGGC AAGCCTCATG
AATGTCCTGT GTGCTCACAG TACTTTGAGC TCAAAGTGGT CGGACCTGGT GGTGATCCTT ATGGACACGG CGATCATCAT
TGATTTCATC CCGCAATTTT CTTTCAGAAA TAAAATTTGC AAAGAGAAGA GAGACAATTT CACCTCTCAA AATTACGAGG
CCTCGTTTTG ATTGGTCTAT ATACCTTGCA GTTTTGCGAG TTTAGAATAG AAATTTTTTC AGTATTTATT AGACACAAGC
TGGTCATTCG ATTGAGCTAT CAAATCCCGC AAGGATGTCT TTTTTGGCTC TGCCAAATAA TTGATAGCAA CACTGATTCT
TTGTCGATTC TTGAATATAG AGCCTTCAAC TATTTTTAGC ACCCCTAAAC CACGAAAGGG CGTAAGGGAC TACAAATGTG
ATCGAATTGA ATAATTACTA GCAATGCAGA TGGAGACAAC TCAAGTATTT TCCTTTTTGT TAAATTATGC ATATAACCCT
TTGTGCTGGC GTGTTGTAGT TAACATTTTA ACTTAAGTTT CCATAAGATT TCTTAAATGT CGACTTTTTT TT

>Vigan.07G015400.01
ATGGTTGCGA TTCATATTGA TAGTGTGAGC GAGTATTTGT GCAGTTGGTG TTTGGAAGGA GACAGAAGAA AACGAGAAGA
ACGCCATTTC CTCAGATCGA TAACCCTAAT CATGTTGCGG AGATTCCTCT CTCATTCCAA TCTCAAATCT CTACACACGG
CGCTCTCACC TTCTCGTCCC CGATTCGCCG CTCCTCTCCT CACCCGCCAC GTCACTGCTC AATCAGGCGC TTCTTCCGTT
AGAAAGAGGG TCGAAGATGT CGTGCCAATT GCTACCGGCC ACGAGCGTGA GGAGATTCAG GCCAGTCTCG AGGGAAGGGA
TATTCTTGAA ATCAACCATC CTGAAGGTCC TTTCGGCACA AAGGAAGCCC CTGCTATTGT TAAATCTTAC TTTGACAGAA
GGATAATTGG ATGCCCAGGA GGTGAAGGTG AAGATGAGCA TGATGTTGTA TGGTTTTGGC TGGAGAATGG CAAGCCTCAT
GAATGTCCTG TGTGCTCACA GTACTTTGAG CTCAAAGTGG TCGGACCTGG TGGTGATCCT TATGGACACG GCGATCATCA
TTGA

>Vigan.07G015400.01
MVAIHIDSVS EYLCSWCLEG DRRKREERHF LRSITLIMLR RFLSHSNLKS LHTALSPSRP RFAAPLLTRH VTAQSGASSV
RKRVEDVVPI ATGHEREEIQ ASLEGRDILE INHPEGPFGT KEAPAIVKSY FDRRIIGCPG GEGEDEHDVV WFWLENGKPH
ECPVCSQYFE LKVVGPGGDP YGHGDHH*