GBrowse Details

Vigan.07G009300.01

Basic Information:
Name: Vigan.07G009300.01
Multiple alignment
Variant Information
Position: Chr07:648166..651976 (- strand)
Length: 3811
Functional Information:
Description: Similar to Uncharacterized protein. [A0A059BYK8, Eucalyptus grandis]
GO: Molecular Function: calcium ion binding (GO:0005509)
InterPro: EF-hand domain (IPR002048)
EF-hand domain pair (IPR011992)
EF-Hand 1, calcium-binding site (IPR018247)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.63,3.03,10.82,13.52,20.01,10.38,11.44,14.79
Arabidopsis thaliana homolog: AT3G18430.1
Automatic updates:
Name: NM_001249298 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500057 (LOC100500057), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:648166..648708 (- strand)
Length: 543
Type: three_prime_UTR
Position: Chr07:648709..648759 (- strand)
Length: 51
Type: CDS
Position: Chr07:648843..648917 (- strand)
Length: 75
Type: CDS
Position: Chr07:649407..649516 (- strand)
Length: 110
Type: CDS
Position: Chr07:650996..651092 (- strand)
Length: 97
Type: CDS
Position: Chr07:651246..651370 (- strand)
Length: 125
Type: CDS
Position: Chr07:651543..651612 (- strand)
Length: 70
Type: CDS
Position: Chr07:651613..651976 (- strand)
Length: 364
Type: five_prime_UTR

>Vigan.07G009300.01 class=Sequence position=Chr07:648166..651976 (- strand)
TGTGAAAAGG TAGACGGTCA CTGGTCTGCG GGTAGCATCG CAACGCAACA GGGCATTGGT GCGTTCGGTA TAGTCGATGA
TGACTAGGCA ATACACGTGT ATATATTCGC AGGTGGTCTG AAGCGTGCCT GGGCCAGCTA GATACGTGTC TGTTCAATCC
AGCCCAACAA CCATTTCATC TCTGCTCTTA AGGTTTTCTA TCTTCTCCCT TTGTTGTAAA TTTTGTATTT TCTTTTTCAT
TTCTTGTTCT ACTATATGCA GTGAAAATAT CATTTGATGT TTGCTATTCT CCAGTCCAGT CCAGTGGTTA GGTGAGTAAT
AATAGATGGT TCTGCAGATT TTGGTTTGAA TCCCAAAACT AGTGATGGGG ACTGCATCAT CTATGTTAAC TCAGTATGAC
ATCGAGGAAG TTCAAGAACA CTGCAATAAT TTATGTAGTT CCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC GTTGTCCCTT TATTACTGTC
CTTTTTTTTA CATTAATTAA GATCTGAAAT TGGGTTTCAA ACTCAGTTTC CCAGCAGGAA ATTGTGTCGT TGTATCAAAG
ATTTTGTCAA CTTGACCGCA ATGCCAAGGG ATTTATTTCG GCGGATGAGT TCTTATCCGT CCCTGAGTTT GCCATGAATC
CGCTTTCTCA GGTGCTCAGT TTTTTCGCTT TATGGCCATT TCGACCCAAA CATTTATTCT TATTTGTTTC GTGGTTTTTG
TACTTTCTTT TCCCATCACC ACATGCTAAA GTGTGGCGTG TGATCTGTTT TCCCATTGTT GATGGACTTT GTGCTTGTTT
GCAGAGGCTG CTCAAGATGG TTGACGGTTT GAATTTTAAA GACTTTGTGG CCTTCTTATC TGCATTCAGT GCCAAAGCTA
ATGCACAACA AAAAATAGAG CGTACGTTTT AATTACATCG TACATCAGTT ATTCAATGCT CTCCGATGTT GTTGTTTTTA
CGAATTATAG TTTAACTTCG TGAGTTAGAA GATGTCCATT AATTTAGGGA TTGTTTTTGC ATTCTCGCTG TTCACCGGAG
TTTCCTAAGT TCTAACCTTG GTCTGAAGGG AAGACCTAAT TGAATTTTTG GGATGTTCAA TAGTGAAGAT GACATTTTCT
GTTGCTTAGC GCACTCCTAA ATTCTTGGAG TTCCACTCAC AGTTCCATAG ACGGCTCAGT TATGGACAAA TTCGAAGTTG
TGTACGGAAT AATGTGACAC TCTCTTGTCT GCCACACATA GCAGGTTTCT AAATTTCATA TTTCAGGTAG AAAAGGTTTG
GACTGCTCAC TTATAAGCAC CTGAATATGG TTGAGAGGGA AAACTTGCTG CCATACGCGT TATGCAAATT TTGGGCAGAC
CTATCTAACT TTATCGACTC CAATTGAATG CGATGTTGGT TAAATTCATT TTTGATGAAG AGCTAAGGAT AACCTCCAAC
CTATTAATTA GTATCACCAA CCAACTGAGT ATGTTCTATT ATATTAATAC AACTCCCAGT CTTGCAGTTA TTAATGCTGA
CCAATCATAA CCAACTATGG TCATTGATTT TAATCAATTT GCCACAAGAA TCCTATATTA GGGACTGTTG TACACCGATC
TTTATTAGGA TTCCCGAGGC TTGGTTAATA GTATCTATAG GTATCCTACA GAAAGGAGAA GTGAATGTTA GGGTGGTCAG
TAGGATAAAA ACATGAACAC ATAGCAATTC TGAATTTTCT CTGTTTTTTT ATACGTAGAT CATACTTGTC AAGTTGTTCT
CATTCCATTG ATTCAGAATT ATTCTTCAAG AGATTCAGGT TTTGCATTTG AATGAACTAG ATGTCTCTGC ATCGCACAAA
TAAAAGGGTG GTCCGGTGTA CAATGCTCCT GCTTGATGGG GATTGAGGTG GGTAGATGTC ACCTCACAAG CATAGACACT
GTTTCTTGGA TTTGGAACCC GACTTCTATA GATCAAGGGC AACAACTTCC CTTTTTTCTT CAAGACTCAC CCTCCTTCAT
CTTTCACATG ATTTTAAGAT AGAATGAAAC ACAAGTAGAG ATCATCATGC AAAAGAATTC ATTTATAAAT GAAACGTATA
AAATTTTCCA TTTTTCAAGT GTAGTCATAT TAGTTAGAAC TTATGATATA AGTAGTATCT TTTTAGTAGG ATCCAACCCT
GTCTTAGATG ACTTCAACAC CTATGCATAG TCTTCACAGT TTTTGTTAAA TATATTTGTA AGAGCTGATA GCTGCGACAA
TGTATTGAAT TATTCAATGA TTTTCATCAT TTGAAGAGGG AATACTTTGT AGGCAGGGGA ATTGATAATT TTTTTCTTAA
TAAATTACAA TAATATATTT TTCTACCTTC ATTGTACTTA TAGTTTCTTT CTTTTTGCAG TTATTTTCAA AGTCTTTGAT
TCAGATCGTA ATGGAAAGGT GTCTTTCAAA GATATATTGG AAGTGCTAAA AGATTTGTCA GGTTCATTCA TGTCCGATGA
CCAGAGAGAG GTATCACCAA CAATCTGTTC ACTTCCATGT GTTGTTTAAT GATGAAGTAG CTTTCCTACT AGTTGCTAAA
TAACCAAGTA TGTCTTCATT TGTTACTGGT TTGGCATCCC TATTTCAAAT TTGATATGTT GAAGTCTGAG TTTAGTATCA
TACAGTTTCA TAGGATTAGT ATATTCATTA TTCATTATTG GTACAACTGG AAGTTCGTCA CTATATAATT TGGGTTGTTG
AGTTACATAG TTTTTATTCC TTGATCTCAT CTCTTTTGCA AGTTCTCTAA AGGGGAAGCT AATGGCTAAA ATGGTAACCA
ACAGATTTCT ATAGTTTTTG AAAGATACAG TTTGTTTCTG CCTTTTGTAT TTCCTATATG CTATAAGTTA ATTGCATTCA
ATTTAACAAA ATCTATTTTT TTTCTCCATA TACCTTTTCA GTTGTGCTTG GCTAATTTAA CTGGAGTTTG GCTAATTTTG
TTCTCTGTTC GATTTGCAGG AAGCTCTCAG TCAAGTTCTA AAAGAAGCAG GATACACAAA AGACTCCTAC TTGACCTTGG
ATGACTTCAT CAAGGTCTGT TCATTTTCTT ATGTATTTCC TCTGTACTTT GGATGACTGC TATGTTTGAT TTAATTTTTA
ATTTTAATTT GTCACAGGTT CTTGGTCAAT ATGACCTAAA AATGGATGTT GAAGTCCCTG TTGATTGAAA CTTGCTTCAG
TTTTCCCTGT CCTGGTGAAA GATAAAACTG CAAACTCTAT TCATAAGATT CTTGTAATAT ATTTCATGTG GAAATGAAAA
GTGCACAGTA CCTTTATCCT TTTCTTCTTG GGATTCTTGT AATGCCGTTG CCTTTCAGCC ACTACCTGTT TTGGAGCGAA
TTTGAAAAGC TCGAGGTTGA TTCAGTTTTT CACGTTCCTT GACAGTTTTT TTTGCAATAT TTTAGTCTCC TAGATTCAGA
GTTAGGTAAT TCTATCCTAT TTGAAGTTTC AACTGTTGCT GAAATTGCCA AGTTCAAGTT TCTTTCTGTG TTATAATCTC
AGCAGTAAGG AATTGTCTCT TCCGCACAAA AGCAGCATGA AGATTGTTGC TGTGTTAGAT TAGAACATTG TGATTTTCAT
CATGATTTGT GATACTAGTC TGATTTGATT GTCATCCAAA CAAGATAATT TTCACGGAGT ATTTGGATAC TCTATAAAAG
TACAGTACCC TTTATGTATT AATATTCATT TACCCTTATA AAAGAGAAAA T

>Vigan.07G009300.01
TGTGAAAAGG TAGACGGTCA CTGGTCTGCG GGTAGCATCG CAACGCAACA GGGCATTGGT GCGTTCGGTA TAGTCGATGA
TGACTAGGCA ATACACGTGT ATATATTCGC AGGTGGTCTG AAGCGTGCCT GGGCCAGCTA GATACGTGTC TGTTCAATCC
AGCCCAACAA CCATTTCATC TCTGCTCTTA AGGTTTTCTA TCTTCTCCCT TTGTTGTAAA TTTTGTATTT TCTTTTTCAT
TTCTTGTTCT ACTATATGCA GTGAAAATAT CATTTGATGT TTGCTATTCT CCAGTCCAGT CCAGTGGTTA GGTGAGTAAT
AATAGATGGT TCTGCAGATT TTGGTTTGAA TCCCAAAACT AGTGATGGGG ACTGCATCAT CTATGTTAAC TCAGTATGAC
ATCGAGGAAG TTCAAGAACA CTGCAATAAT TTATTTTCCC AGCAGGAAAT TGTGTCGTTG TATCAAAGAT TTTGTCAACT
TGACCGCAAT GCCAAGGGAT TTATTTCGGC GGATGAGTTC TTATCCGTCC CTGAGTTTGC CATGAATCCG CTTTCTCAGA
GGCTGCTCAA GATGGTTGAC GGTTTGAATT TTAAAGACTT TGTGGCCTTC TTATCTGCAT TCAGTGCCAA AGCTAATGCA
CAACAAAAAA TAGAGCTTAT TTTCAAAGTC TTTGATTCAG ATCGTAATGG AAAGGTGTCT TTCAAAGATA TATTGGAAGT
GCTAAAAGAT TTGTCAGGTT CATTCATGTC CGATGACCAG AGAGAGGAAG CTCTCAGTCA AGTTCTAAAA GAAGCAGGAT
ACACAAAAGA CTCCTACTTG ACCTTGGATG ACTTCATCAA GGTTCTTGGT CAATATGACC TAAAAATGGA TGTTGAAGTC
CCTGTTGATT GAAACTTGCT TCAGTTTTCC CTGTCCTGGT GAAAGATAAA ACTGCAAACT CTATTCATAA GATTCTTGTA
ATATATTTCA TGTGGAAATG AAAAGTGCAC AGTACCTTTA TCCTTTTCTT CTTGGGATTC TTGTAATGCC GTTGCCTTTC
AGCCACTACC TGTTTTGGAG CGAATTTGAA AAGCTCGAGG TTGATTCAGT TTTTCACGTT CCTTGACAGT TTTTTTTGCA
ATATTTTAGT CTCCTAGATT CAGAGTTAGG TAATTCTATC CTATTTGAAG TTTCAACTGT TGCTGAAATT GCCAAGTTCA
AGTTTCTTTC TGTGTTATAA TCTCAGCAGT AAGGAATTGT CTCTTCCGCA CAAAAGCAGC ATGAAGATTG TTGCTGTGTT
AGATTAGAAC ATTGTGATTT TCATCATGAT TTGTGATACT AGTCTGATTT GATTGTCATC CAAACAAGAT AATTTTCACG
GAGTATTTGG ATACTCTATA AAAGTACAGT ACCCTTTATG TATTAATATT CATTTACCCT TATAAAAGAG AAAAT

>Vigan.07G009300.01
ATGGGGACTG CATCATCTAT GTTAACTCAG TATGACATCG AGGAAGTTCA AGAACACTGC AATAATTTAT TTTCCCAGCA
GGAAATTGTG TCGTTGTATC AAAGATTTTG TCAACTTGAC CGCAATGCCA AGGGATTTAT TTCGGCGGAT GAGTTCTTAT
CCGTCCCTGA GTTTGCCATG AATCCGCTTT CTCAGAGGCT GCTCAAGATG GTTGACGGTT TGAATTTTAA AGACTTTGTG
GCCTTCTTAT CTGCATTCAG TGCCAAAGCT AATGCACAAC AAAAAATAGA GCTTATTTTC AAAGTCTTTG ATTCAGATCG
TAATGGAAAG GTGTCTTTCA AAGATATATT GGAAGTGCTA AAAGATTTGT CAGGTTCATT CATGTCCGAT GACCAGAGAG
AGGAAGCTCT CAGTCAAGTT CTAAAAGAAG CAGGATACAC AAAAGACTCC TACTTGACCT TGGATGACTT CATCAAGGTT
CTTGGTCAAT ATGACCTAAA AATGGATGTT GAAGTCCCTG TTGATTGA

>Vigan.07G009300.01
MGTASSMLTQ YDIEEVQEHC NNLFSQQEIV SLYQRFCQLD RNAKGFISAD EFLSVPEFAM NPLSQRLLKM VDGLNFKDFV
AFLSAFSAKA NAQQKIELIF KVFDSDRNGK VSFKDILEVL KDLSGSFMSD DQREEALSQV LKEAGYTKDS YLTLDDFIKV
LGQYDLKMDV EVPVD*