GBrowse Details

Vigan.07G005900.01

Basic Information:
Name: Vigan.07G005900.01
Multiple alignment
Variant Information
Position: Chr07:408927..410993 (+ strand)
Length: 2067
Functional Information:
Description: Similar to WRKY27. [Q2PJR9, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro: DNA-binding WRKY (IPR003657)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:13.49,2.45,3.60,13.46,12.48,0.89,10. 43,7.62
Automatic updates:
Name: DQ322695 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max WRKY27 mRNA, complete cds.
PubMed ID: 18384508 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr07:408927..409279 (+ strand)
Length: 353
Type: five_prime_UTR
Position: Chr07:409280..409354 (+ strand)
Length: 75
Type: CDS
Position: Chr07:409467..409532 (+ strand)
Length: 66
Type: CDS
Position: Chr07:409712..410035 (+ strand)
Length: 324
Type: CDS
Position: Chr07:410131..410247 (+ strand)
Length: 117
Type: CDS
Position: Chr07:410352..410684 (+ strand)
Length: 333
Type: CDS
Position: Chr07:410685..410993 (+ strand)
Length: 309
Type: three_prime_UTR

>Vigan.07G005900.01 class=Sequence position=Chr07:408927..410993 (+ strand)
TAAAATGCCA GCTCTGAAAC AGACAAGTAG TTGGATAGAT TGAGAGTGTC GTCTTCTTCT CTCTCCTTCC TCTCAGTTTC
CTTCTTCAAC TTGTGCTCCT TTCAACTTGC GCTCTCGCTT TCTTCCCCTT ATATAAGCCT CTTCCAATTT GTTTACTACA
AACTTCATAA ATTTTGAATC TTTCACCTTC CTCTATATTC TCTTCATCTG GGTATTGCTT GATTTCAAAA AAATCTAGCT
ACAGTTTGAC TTTTTTGCGT AAAACAGGAG CTTTTCAGAA TTGAAGCTTT ATACAAGAGT GCTTAATATC ACGGGAAAAA
GCTTCTTCTT CTCTTTGACT TTAATTGCAA GTCATGGATT ATTCATCACG GATTAACACT TCATTGGATC TCAATATCAA
TCCTCACAGG CTGCACGAAG AACTTCCCGT AAGTGTAAAC AATCCATTCC GATGATGTGA AGATCTTCTG TCAGTAGTTT
CCCCTCAGAA TAATGTTTGA TATGGGAAAT AATTCTTTCT TCTGTGTCTG TTCATTTCAG AAAAAGGAGG TGGAACACAA
TTTTTTCTCT TTGGGGGTGA AGAAATCCTC TGTAAAAGAA CAGCAGGTTA GTTAGTTCTC CCAAATCCTC TTCTTTAAGC
TGTCTTTTAT TTGGGTTCTT CCGAAGCTCA CCATTTGGTT GAGCAATTCT CTTATTAGTA ATTAAGTTCA GTGTGGAAGC
TAGATATTGG CTCTTTTTCC CCTTTTTAGA GCTGCATAAT GATCACGTGT GTGCTGCCAT TTCAGTCTTC CAGTGCCTTG
GTGGAGGAGC TGAAGCGGGT GAGTGCAGAA AACAAGAAGT TGACCGAAAT GCTGACGGAG ATGTGTGAGA ACTATAACTC
TATGCGAAGC AATTTGATGG AATATATGAG GAAGAATCCT GACAAGGAGC AAAGCTCCTC GAAGAAAAGG AAGTCAGAAA
GCAGCTTCAA TAATAGTGCT CCGAAGAGCA TGAACGGAAA CTCCGAGAGC AGCTCAACCG ACGAAGAATC ATGCAAGAAA
CCAAAGGAAG ACATCAAGAC ACCATTTTCA AAAGTTTACG TGAGGACAGA AGCATCTGAT ACAGGCCTGG TAAGATTCTG
AGCATAAAAC ATATGTAACT GGTGGTAACC ATTAAGACTG TTGTGCATTA GTTTGACAGG CTTTTCATTT TTTCGTGTTT
CCAGATTGTG AAAGATGGAT ATCAATGGAG GAAATACGGA CAAAAGGTTA CCAGGGATAA CCCTTCTCCA AGAGCTTACT
TCAAGTGCTC TTTCGCTCCA AGCTGCCCGG TCAAAAAGAA GGTAAATCCA TGAGCTAATT AAGCATAACT AAGCATTCAA
ACTCCTCTAT ATGGAACTGG ATGATCAATC TGAAGCTAAA TTTGTGTTTG TAATTCAATA TTCAGGTGCA AAGAAGTGTG
GATGATCAAT CTGTTCTGGT TGCAACATAT GAAGGAGAGC ACAATCATCC TCACCCTTCT CAAATGGAGC CAACCGCAGG
CTCCAACCGT GGTGTGACCC CATGTTCAGG GTCTCTCAGC TCTTCCGCAC CAACAGTAAC CCTTGACTGG ACGAAATCCA
AGTCCAGCAC CGATTCCAAG AACATAACTC CCAAAATGGA GGCACCACAA ATCCCTCAGG TTTTGGTAGA ACAGATGGCC
ACTTCCCTCA CCAAGGATCC TAATTTCAGA GCAGCACTGG TTGCCGCAAT CTCAGGAAAA ATGTTGCACA ATAATTGAGT
AGAAGAAGAA AATGACTGAA CTCGGTGTCA AGTTTTCTAT AAATGGATCG TGTTTAGAGA ATAGGATCTC TATGTAAATA
CAACATAGAA CATTATTGGG ACATATTCTA GCTGATTACG CATTTGCTAA TCTGGCTCGG CTCAATCTTT TCCATTCTTC
TGCATCGGGG TAAACTAGGA CAGTTAAAAT CAGGTTTCGT TTAAGTTCTT GCGAATTTTC TGCAGCATAC AAAGCAAAGA
AAAACTTTGC TTCAAAAACT GTAATTCTAT CGATAATATA TACAATATCT CCTTTTCATT TCCCAAT

>Vigan.07G005900.01
TAAAATGCCA GCTCTGAAAC AGACAAGTAG TTGGATAGAT TGAGAGTGTC GTCTTCTTCT CTCTCCTTCC TCTCAGTTTC
CTTCTTCAAC TTGTGCTCCT TTCAACTTGC GCTCTCGCTT TCTTCCCCTT ATATAAGCCT CTTCCAATTT GTTTACTACA
AACTTCATAA ATTTTGAATC TTTCACCTTC CTCTATATTC TCTTCATCTG GGTATTGCTT GATTTCAAAA AAATCTAGCT
ACAGTTTGAC TTTTTTGCGT AAAACAGGAG CTTTTCAGAA TTGAAGCTTT ATACAAGAGT GCTTAATATC ACGGGAAAAA
GCTTCTTCTT CTCTTTGACT TTAATTGCAA GTCATGGATT ATTCATCACG GATTAACACT TCATTGGATC TCAATATCAA
TCCTCACAGG CTGCACGAAG AACTTCCCAA AAAGGAGGTG GAACACAATT TTTTCTCTTT GGGGGTGAAG AAATCCTCTG
TAAAAGAACA GCAGTCTTCC AGTGCCTTGG TGGAGGAGCT GAAGCGGGTG AGTGCAGAAA ACAAGAAGTT GACCGAAATG
CTGACGGAGA TGTGTGAGAA CTATAACTCT ATGCGAAGCA ATTTGATGGA ATATATGAGG AAGAATCCTG ACAAGGAGCA
AAGCTCCTCG AAGAAAAGGA AGTCAGAAAG CAGCTTCAAT AATAGTGCTC CGAAGAGCAT GAACGGAAAC TCCGAGAGCA
GCTCAACCGA CGAAGAATCA TGCAAGAAAC CAAAGGAAGA CATCAAGACA CCATTTTCAA AAGTTTACGT GAGGACAGAA
GCATCTGATA CAGGCCTGAT TGTGAAAGAT GGATATCAAT GGAGGAAATA CGGACAAAAG GTTACCAGGG ATAACCCTTC
TCCAAGAGCT TACTTCAAGT GCTCTTTCGC TCCAAGCTGC CCGGTCAAAA AGAAGGTGCA AAGAAGTGTG GATGATCAAT
CTGTTCTGGT TGCAACATAT GAAGGAGAGC ACAATCATCC TCACCCTTCT CAAATGGAGC CAACCGCAGG CTCCAACCGT
GGTGTGACCC CATGTTCAGG GTCTCTCAGC TCTTCCGCAC CAACAGTAAC CCTTGACTGG ACGAAATCCA AGTCCAGCAC
CGATTCCAAG AACATAACTC CCAAAATGGA GGCACCACAA ATCCCTCAGG TTTTGGTAGA ACAGATGGCC ACTTCCCTCA
CCAAGGATCC TAATTTCAGA GCAGCACTGG TTGCCGCAAT CTCAGGAAAA ATGTTGCACA ATAATTGAGT AGAAGAAGAA
AATGACTGAA CTCGGTGTCA AGTTTTCTAT AAATGGATCG TGTTTAGAGA ATAGGATCTC TATGTAAATA CAACATAGAA
CATTATTGGG ACATATTCTA GCTGATTACG CATTTGCTAA TCTGGCTCGG CTCAATCTTT TCCATTCTTC TGCATCGGGG
TAAACTAGGA CAGTTAAAAT CAGGTTTCGT TTAAGTTCTT GCGAATTTTC TGCAGCATAC AAAGCAAAGA AAAACTTTGC
TTCAAAAACT GTAATTCTAT CGATAATATA TACAATATCT CCTTTTCATT TCCCAAT

>Vigan.07G005900.01
ATGGATTATT CATCACGGAT TAACACTTCA TTGGATCTCA ATATCAATCC TCACAGGCTG CACGAAGAAC TTCCCAAAAA
GGAGGTGGAA CACAATTTTT TCTCTTTGGG GGTGAAGAAA TCCTCTGTAA AAGAACAGCA GTCTTCCAGT GCCTTGGTGG
AGGAGCTGAA GCGGGTGAGT GCAGAAAACA AGAAGTTGAC CGAAATGCTG ACGGAGATGT GTGAGAACTA TAACTCTATG
CGAAGCAATT TGATGGAATA TATGAGGAAG AATCCTGACA AGGAGCAAAG CTCCTCGAAG AAAAGGAAGT CAGAAAGCAG
CTTCAATAAT AGTGCTCCGA AGAGCATGAA CGGAAACTCC GAGAGCAGCT CAACCGACGA AGAATCATGC AAGAAACCAA
AGGAAGACAT CAAGACACCA TTTTCAAAAG TTTACGTGAG GACAGAAGCA TCTGATACAG GCCTGATTGT GAAAGATGGA
TATCAATGGA GGAAATACGG ACAAAAGGTT ACCAGGGATA ACCCTTCTCC AAGAGCTTAC TTCAAGTGCT CTTTCGCTCC
AAGCTGCCCG GTCAAAAAGA AGGTGCAAAG AAGTGTGGAT GATCAATCTG TTCTGGTTGC AACATATGAA GGAGAGCACA
ATCATCCTCA CCCTTCTCAA ATGGAGCCAA CCGCAGGCTC CAACCGTGGT GTGACCCCAT GTTCAGGGTC TCTCAGCTCT
TCCGCACCAA CAGTAACCCT TGACTGGACG AAATCCAAGT CCAGCACCGA TTCCAAGAAC ATAACTCCCA AAATGGAGGC
ACCACAAATC CCTCAGGTTT TGGTAGAACA GATGGCCACT TCCCTCACCA AGGATCCTAA TTTCAGAGCA GCACTGGTTG
CCGCAATCTC AGGAAAAATG TTGCACAATA ATTGA

>Vigan.07G005900.01
MDYSSRINTS LDLNINPHRL HEELPKKEVE HNFFSLGVKK SSVKEQQSSS ALVEELKRVS AENKKLTEML TEMCENYNSM
RSNLMEYMRK NPDKEQSSSK KRKSESSFNN SAPKSMNGNS ESSSTDEESC KKPKEDIKTP FSKVYVRTEA SDTGLIVKDG
YQWRKYGQKV TRDNPSPRAY FKCSFAPSCP VKKKVQRSVD DQSVLVATYE GEHNHPHPSQ MEPTAGSNRG VTPCSGSLSS
SAPTVTLDWT KSKSSTDSKN ITPKMEAPQI PQVLVEQMAT SLTKDPNFRA ALVAAISGKM LHNN*