GBrowse Details

Vigan.06G250000.01

Basic Information:
Name: Vigan.06G250000.01
Multiple alignment
Variant Information
Position: Chr06:37398049..37401097 (+ strand)
Length: 3049
Functional Information:
Description: Similar to uncharacterized protein. [B8B1L7, Oryza sativa subsp. indica]
InterPro: Protein of unknown function DUF1218 (IPR009606)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.65,4.90,9.67,3.42,4.41,16.52,14.56 ,5.97
Arabidopsis thaliana homolog: AT5G17210.1
Automatic updates:
Name: NM_001255361 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100787046 (LOC100787046), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255361 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100787046 (LOC100787046), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:37398049..37398179 (+ strand)
Length: 131
Type: five_prime_UTR
Position: Chr06:37398180..37398275 (+ strand)
Length: 96
Type: CDS
Position: Chr06:37398855..37399057 (+ strand)
Length: 203
Type: CDS
Position: Chr06:37400483..37400807 (+ strand)
Length: 325
Type: CDS
Position: Chr06:37400808..37401097 (+ strand)
Length: 290
Type: three_prime_UTR

>Vigan.06G250000.01 class=Sequence position=Chr06:37398049..37401097 (+ strand)
GCCTGGTGCA CGCTTCTTGT CCTCTTCCAT TCATCGCTGC TTACCAACTT TTCGTTTTCT CTTAATTAAC ATCACTCTCT
GAAAGAGACA CTTTCACTAT CTCTGTCAAC CAAATTCCAT TCGCAGAGAG AATGGAGAGA AAGGCTTTGA TAGTGTGCTG
CGTCGTTGGC TTCCTCGGAC TGTTGGCGGC TGCAACTAGC TTCGCTGCTG AAGCGACAAG GATTAAGGTT TGTGTCTTTT
GTTAATGTTT TCTCGAATAC CCATCAACGA AAGGATCAAT CTTTTGCGTT ATTTTTAGTT CAATGTCTGT TGGGTCTAAT
GCTTGTGCTT GCCACTGTTA AGGGCATGCT TTGATGGGTT ATCATGAGTC TTCTCAAAAT CTTCGATTTT CGCTTGTTTA
AGCGTTTATG ATTGGCTGTT TTTAAATTGT ACTTTTTGTT TTCCTTGGTT CCATTTTCGT CTTGAAGATT TTGCTTTTCC
CCTTTACTTG TTGTGTATGG TGATTAGTCC GTTATCCTTT TCTTTCTACG AATTTTGGGA CGGATAGGGT CTGTAGAAAG
GACATGCATT TAGATACATG CAAGGGGTTT TTTCTGTGAA TCCTTGGAGG GGAGAGAAAG GAAAGGGAAC GATGATGTCG
TTCATGTAAA CTCTTATGTT GACAGGTTTT GAGTAGATAA TACACCAGTT CAGTATTCAA GGAACGTGCA TTCCTTTTTT
TTTTTTTTTC GTTGTAAGTT TTGCTGTGTT TATGTTCACT ATAAGCAAAA GTTGATATAA TGAGTATTGT TGTGTAACTT
ATGCAGGCTT CTCAAGTTCA TTTTGTTTCT ATCAATCAGT GCACGTATCC TCGAAGTCCT GCCATGGGTC TTGGTTTAAT
TGCGGCTCTG GCTCTTATGG TATCTCAAAT AATCATAAAT GTTGCAACTG GGTGTGTTTG TTGCAGAAGA AGTTCCCAAA
TCCCAGATTC CAACTGGAAG GTGGCACTGG CCTGCTTTGT TTTGTCCTGG TAATTTTTAC TCTGTACTTT TTGTTTGTCA
TACCATGTTA GGAATTTAAG TAGTGCTAGA AGTTTCATGT TGGATAAAAA TGAAAAGACG AACAATATAT AGCTAAAAAG
ATTTATTAGA TAGTTACTCT TAAGTCTTAA GCACAGGAGG AGAGTCCAAC CCAATAGCTA GTCCATTGGG TGGGAGAACC
TTAAGTTTAA GTATCTCATC ACGTAGCTTA TTCTACTCAA TTTGAACCTC CTTTAAGACT GACATCCGTT AGAACTTCAC
CTTATCAACA CTGATTTGGT GGTAGCCCCT TTCCCCTTGA GATGGTTTCA GTCATCTACT TCATCGTACT TTAGCATGAG
ACTTCTAACA TTGTCACCTT CTGTTGTCAC TGACCTGGTG TTTCCTCTTT TCTCCTTGAG ATGACTTCAC TCATTTATCA
GTATTTAGTT TGCACCTCAA TTCAACCAAG AGGTAGTCCT TTCTGTGACC CAACTCTCAA TAAAAAACAC TAATTGTTAG
GACTCAAACA CAAGAAGATA ATCCAATCCA AAAAACCAGT CCATTAGGTG GGAGGACCTC TATGCTTAAA AAGTACCATA
TCAAGTAGTT CATCTTTAAT GTGGCGGAGC TTAAAAACTG TTGTTAGTAG TTGATTTTCT GGTGCTTTCA TTCTTCTAAA
GAGAATCCGG CTTTAAACAA AGCAGACATG ATTCTTCAGC AGTGAAGATG GATTTGGATA ACTCATTTTT AGGGTAGTAT
ATTTAAGGTA AACTGTGGAG GAGTATATGG AATTAGTATT TTATTTTTTA AAGGAATCTT CTCCGTTTCT TTTGCACGAT
GGCTTATATT CCTTCATGCT TAGACGTTTG AATGAGAAGC AATTTTGATA TTTACAATGT GGAGTATATG GAATTAGTAT
TTTATTTACA ATGTACACAC ATAGGGAACT GATAGCAAAG ATTTTTGAAT GAGAAGCAAT TTTGAACTAT CACGATTACA
CTAGTGAGTT TTGAGGTACA TAATCATGAT TATTCTTTTG ATATATATGC ATATACATAT GGTTGTAGAA ACATAGTACT
ATTTGTATGA TCAGTCTCGA TTCTTTTCTT TCTTTTAAAC TGTGTGCATT TGTCTGATTT TATTTAGTAA TAAATGTCAA
GTTCATGAAC ACAAATACCA TTCTCTACCA TAGATCTCTT TTGTTTATTC TTGAGTTTAT AATCTCGTTT GAGTTTATAA
CACAAACAAA GCCTGTTCTG TTGTACGAGT ACATTGGTTT TGTGTGTGGA GTGGAACAAC ATTAACTTGT GTCTGATGCA
GAGGTTTATT CCAGAACAGT AGGCTAAATG ATTTCATCTA CAATTAGTAG AAAAATCACA TGCTTGTATA ATTGAAATAG
TTGAGTTGAT TGGTGTAAAT GTGTGTTGAA ACAGGTTCAC ATTTGTAATT GGTTTTCTGC TGTTGCTTAC TGGTGCTGCA
CTGAATGATC AAAGAGGTGA AGAGAATGTG TACTTTGGGT ACTACTACTG CTATGTGGTG AAAGCTGGAG TGTTTGCAGG
GGGTGCAATT TTATCCCTTG CAAGTGCTGC ATTTGGAATT GTGTATTACA TTTCCCTAAC TGAGAAAAAG AATGCTATGC
AATACCCATA TCCCAACCAA GGGGTCATAG CCATGGCACA ACCTCAGATT CCATCTCAGA CTAATCAAGA TCCAGTCTTT
GTGCATGAAG ACACATACGT TAGACGACAG TTCACATGAT TCCTATTACT GCTTTAACCA AAACCCTAAT TCTAATATTT
AGGGTTTGTA TGTGCATATG CTTCACTTTT GAGAGGGAAA TTGTGCTTTT GGCTGTGTTT ATAATTGGAT TTGTTAGAAC
TCTTTAGCAG GAGTAGCTTT GGATATCATG TTTAAAGAGA CCTACAATTA TGTAACCTAT AAGTATCATC TTCTAACTTC
AGAGAATTAA AGTATAAACT AAACAATATT GTAATATTTT ACCTATATCT CATAGCATCT TTTGGTGGCT TCCTGCACCC
CACAATTTC

>Vigan.06G250000.01
GCCTGGTGCA CGCTTCTTGT CCTCTTCCAT TCATCGCTGC TTACCAACTT TTCGTTTTCT CTTAATTAAC ATCACTCTCT
GAAAGAGACA CTTTCACTAT CTCTGTCAAC CAAATTCCAT TCGCAGAGAG AATGGAGAGA AAGGCTTTGA TAGTGTGCTG
CGTCGTTGGC TTCCTCGGAC TGTTGGCGGC TGCAACTAGC TTCGCTGCTG AAGCGACAAG GATTAAGGCT TCTCAAGTTC
ATTTTGTTTC TATCAATCAG TGCACGTATC CTCGAAGTCC TGCCATGGGT CTTGGTTTAA TTGCGGCTCT GGCTCTTATG
GTATCTCAAA TAATCATAAA TGTTGCAACT GGGTGTGTTT GTTGCAGAAG AAGTTCCCAA ATCCCAGATT CCAACTGGAA
GGTGGCACTG GCCTGCTTTG TTTTGTCCTG GTTCACATTT GTAATTGGTT TTCTGCTGTT GCTTACTGGT GCTGCACTGA
ATGATCAAAG AGGTGAAGAG AATGTGTACT TTGGGTACTA CTACTGCTAT GTGGTGAAAG CTGGAGTGTT TGCAGGGGGT
GCAATTTTAT CCCTTGCAAG TGCTGCATTT GGAATTGTGT ATTACATTTC CCTAACTGAG AAAAAGAATG CTATGCAATA
CCCATATCCC AACCAAGGGG TCATAGCCAT GGCACAACCT CAGATTCCAT CTCAGACTAA TCAAGATCCA GTCTTTGTGC
ATGAAGACAC ATACGTTAGA CGACAGTTCA CATGATTCCT ATTACTGCTT TAACCAAAAC CCTAATTCTA ATATTTAGGG
TTTGTATGTG CATATGCTTC ACTTTTGAGA GGGAAATTGT GCTTTTGGCT GTGTTTATAA TTGGATTTGT TAGAACTCTT
TAGCAGGAGT AGCTTTGGAT ATCATGTTTA AAGAGACCTA CAATTATGTA ACCTATAAGT ATCATCTTCT AACTTCAGAG
AATTAAAGTA TAAACTAAAC AATATTGTAA TATTTTACCT ATATCTCATA GCATCTTTTG GTGGCTTCCT GCACCCCACA
ATTTC

>Vigan.06G250000.01
ATGGAGAGAA AGGCTTTGAT AGTGTGCTGC GTCGTTGGCT TCCTCGGACT GTTGGCGGCT GCAACTAGCT TCGCTGCTGA
AGCGACAAGG ATTAAGGCTT CTCAAGTTCA TTTTGTTTCT ATCAATCAGT GCACGTATCC TCGAAGTCCT GCCATGGGTC
TTGGTTTAAT TGCGGCTCTG GCTCTTATGG TATCTCAAAT AATCATAAAT GTTGCAACTG GGTGTGTTTG TTGCAGAAGA
AGTTCCCAAA TCCCAGATTC CAACTGGAAG GTGGCACTGG CCTGCTTTGT TTTGTCCTGG TTCACATTTG TAATTGGTTT
TCTGCTGTTG CTTACTGGTG CTGCACTGAA TGATCAAAGA GGTGAAGAGA ATGTGTACTT TGGGTACTAC TACTGCTATG
TGGTGAAAGC TGGAGTGTTT GCAGGGGGTG CAATTTTATC CCTTGCAAGT GCTGCATTTG GAATTGTGTA TTACATTTCC
CTAACTGAGA AAAAGAATGC TATGCAATAC CCATATCCCA ACCAAGGGGT CATAGCCATG GCACAACCTC AGATTCCATC
TCAGACTAAT CAAGATCCAG TCTTTGTGCA TGAAGACACA TACGTTAGAC GACAGTTCAC ATGA

>Vigan.06G250000.01
MERKALIVCC VVGFLGLLAA ATSFAAEATR IKASQVHFVS INQCTYPRSP AMGLGLIAAL ALMVSQIIIN VATGCVCCRR
SSQIPDSNWK VALACFVLSW FTFVIGFLLL LTGAALNDQR GEENVYFGYY YCYVVKAGVF AGGAILSLAS AAFGIVYYIS
LTEKKNAMQY PYPNQGVIAM AQPQIPSQTN QDPVFVHEDT YVRRQFT*