GBrowse Details

Vigan.06G246700.01

Basic Information:
Name: Vigan.06G246700.01
Multiple alignment
Variant Information
Position: Chr06:37113493..37115368 (+ strand)
Length: 1876
Functional Information:
Description: Similar to ubiquitin-conjugating enzyme E2 20-like. [XP_004511505.1, Cicer arietinum]
GO: Molecular Function: acid-amino acid ligase activity (GO:0016881)
InterPro: Ubiquitin-conjugating enzyme, E2 (IPR000608)
Ubiquitin-conjugating enzyme/RWD-like (IPR016135)
Ubiquitin-conjugating enzyme, active site (IPR023313)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.05,18.45,4.17,25.05,13.84,25. 21,10.20
Arabidopsis thaliana homolog: AT3G20060.1
Automatic updates:
Name: NM_001251712 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527864 (LOC100527864), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251712 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ubiquitin-conjugating enzyme (LOC100527864), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:37113493..37113792 (+ strand)
Length: 300
Type: five_prime_UTR
Position: Chr06:37113793..37113908 (+ strand)
Length: 116
Type: CDS
Position: Chr06:37114266..37114293 (+ strand)
Length: 28
Type: CDS
Position: Chr06:37114388..37114615 (+ strand)
Length: 228
Type: CDS
Position: Chr06:37114727..37114790 (+ strand)
Length: 64
Type: CDS
Position: Chr06:37114877..37114936 (+ strand)
Length: 60
Type: CDS
Position: Chr06:37115040..37115083 (+ strand)
Length: 44
Type: CDS
Position: Chr06:37115084..37115368 (+ strand)
Length: 285
Type: three_prime_UTR

>Vigan.06G246700.01 class=Sequence position=Chr06:37113493..37115368 (+ strand)
AAAGTAGGGT TTAGTTAGTA CTAGCCGTTG GGTTCTGATC TTTTGTGCTA CTCAACGTTT AAATTTGAAC TACTGAACTA
TTGTGCATGT AGGGTTTGGT GAAATTCCCA ACGGCTAGTA CAACCTTTAA AGTCGCACTT TTTCTCATTC AATAGTCATC
ACAACTTCTT CTTCTCATAA CCCTTTGCAA GAAGGAAGAT TCATATTGAG AACACTGCTA TCTCTGTCTT CCTTCATCTT
CTTCTTTCTG CAAATCAAGG GTTATTTATT TATTCTTTTT ATTCATTCCA TTCTCTCAAT ATGGCTACTA ACACCATTCA
CGGAAACAAT GAATCTGCTC AACCCAACAA CATTGCTTCC TCAAAGCAGC CTCTCCCTCC TGCCAAGACA GTTGATTCTC
AATCTGTTCT CAGAAGGTTC TTTTTCATTC TTCTTGTTTT CTCTCTTTTG TTATGTTACT GTTTAGAATA TACCTTAAAT
TTCTTCTTGT AGTGTTCTGT AGTGAGTATC AAATAGATTC ATAAATAATC TTTCAAGAAT TAAAATTCAT GGCAAGTAAC
CCATCAAACT GATACAGAAT GTTGATAAAA GATTCCAACT TGGAGACTAA TCAGATAGAT AACCAATACT CAGAATTATG
TATATGATTT AATTTAATTA CTCTAGAATC AATAGTATAG GAGGTAGAGT AGTATTTGAG AGATCAAGTT GATGTTTTGT
TCCATTGCCT TCTCTTTATG ATCTAATGTT TTTTGTTTTG TGTTGTTAAA CAGGCTGCAA TCTGAATTGA TGGCTTTGAT
GGTAAGAAAA ACACATATAC ACGCATATAA TTGGGTGATT TGAATGTTGG GAAAATGTCT GATTGTTTTT TGGTTTTGTG
GGTTAATTGT GTTAGATGAG TGGAGATTCT GGGATATCTG CATTTCCTGA AGAGGACAAC ATATTTTTCT GGAAAGGAAC
AATCAGTGGA AGCAAAGATA CTGTGTTTGA AGGCACAGAG TATAAGCTGT CTCTCTCTTT TCCCAATGAT TACCCTTTTA
AGCCTCCAAA AGTCAAGTTT GAAACAACCT GCTTCCACCC CAATGTTGAT GTGCATGGCA ATATATGCTT AGACATACTC
CAGGTGATTT GATGTGATGT GACATTTTAT AATGAAGATT AAGCATTAAT TGTGTTCTTG AATTGCCATT ATATTTTGAT
GTGTGTTTTT TATTGTTTTA CTTTGCTTAT GTAGGATAAA TGGTCATCTG CATATGATGT CAGAACAATT CTTATATCCA
TCCAAAGTCT GCTTGGAGGT AACTTAAGAA GTCTCTTAAT GGTTAATTAA TGCTTACTCA TTATTTTTTT TTCTTCTTCT
AACTTTTGTT TTTGTTAAAC TTAGAGCCAA ACATTAGTTC ACCACTAAAC CCACAAGCAG CACAGCTATG GAGCAATCAA
GAAGGTGACG AGAACATTGA TATCTATATT TGAAACTTTT AACTTTTGAG GATTTTGCAT GTCTCTAATA AAAGTTTGTT
TGTGTTGTGA TGTGTTGTGT TGTACAGAAT ACAGGAAGAC GGTTGAGAAG TTGTACAAAT CTGGAAATTG ATGAATCTAG
TGGGAGAAAA GATGAAGCCA CAGTTGGTTT TTTAGGTGTC CTTTTCTGAG GAGCCTGTTT TTATATTTTT ATCATTTACC
AATCATTGTA TGTTCCTTTC TTTTCTTTAC AATCAAAGGT TAAAAGGTTC TGTTATTTGT GAATGTCCTT CTTTTCTGTG
ATCATACTCT TGATATTTTA TGCGACAACA ACTGCTACAA TTCAATTAAT TAAGATTAGT AAAAGAAACT CATTCTGTTA
ATCAAATTAG GATTTTGGAT TTGGATTGTG TGTAGA

>Vigan.06G246700.01
AAAGTAGGGT TTAGTTAGTA CTAGCCGTTG GGTTCTGATC TTTTGTGCTA CTCAACGTTT AAATTTGAAC TACTGAACTA
TTGTGCATGT AGGGTTTGGT GAAATTCCCA ACGGCTAGTA CAACCTTTAA AGTCGCACTT TTTCTCATTC AATAGTCATC
ACAACTTCTT CTTCTCATAA CCCTTTGCAA GAAGGAAGAT TCATATTGAG AACACTGCTA TCTCTGTCTT CCTTCATCTT
CTTCTTTCTG CAAATCAAGG GTTATTTATT TATTCTTTTT ATTCATTCCA TTCTCTCAAT ATGGCTACTA ACACCATTCA
CGGAAACAAT GAATCTGCTC AACCCAACAA CATTGCTTCC TCAAAGCAGC CTCTCCCTCC TGCCAAGACA GTTGATTCTC
AATCTGTTCT CAGAAGGCTG CAATCTGAAT TGATGGCTTT GATGATGAGT GGAGATTCTG GGATATCTGC ATTTCCTGAA
GAGGACAACA TATTTTTCTG GAAAGGAACA ATCAGTGGAA GCAAAGATAC TGTGTTTGAA GGCACAGAGT ATAAGCTGTC
TCTCTCTTTT CCCAATGATT ACCCTTTTAA GCCTCCAAAA GTCAAGTTTG AAACAACCTG CTTCCACCCC AATGTTGATG
TGCATGGCAA TATATGCTTA GACATACTCC AGGATAAATG GTCATCTGCA TATGATGTCA GAACAATTCT TATATCCATC
CAAAGTCTGC TTGGAGAGCC AAACATTAGT TCACCACTAA ACCCACAAGC AGCACAGCTA TGGAGCAATC AAGAAGAATA
CAGGAAGACG GTTGAGAAGT TGTACAAATC TGGAAATTGA TGAATCTAGT GGGAGAAAAG ATGAAGCCAC AGTTGGTTTT
TTAGGTGTCC TTTTCTGAGG AGCCTGTTTT TATATTTTTA TCATTTACCA ATCATTGTAT GTTCCTTTCT TTTCTTTACA
ATCAAAGGTT AAAAGGTTCT GTTATTTGTG AATGTCCTTC TTTTCTGTGA TCATACTCTT GATATTTTAT GCGACAACAA
CTGCTACAAT TCAATTAATT AAGATTAGTA AAAGAAACTC ATTCTGTTAA TCAAATTAGG ATTTTGGATT TGGATTGTGT
GTAGA

>Vigan.06G246700.01
ATGGCTACTA ACACCATTCA CGGAAACAAT GAATCTGCTC AACCCAACAA CATTGCTTCC TCAAAGCAGC CTCTCCCTCC
TGCCAAGACA GTTGATTCTC AATCTGTTCT CAGAAGGCTG CAATCTGAAT TGATGGCTTT GATGATGAGT GGAGATTCTG
GGATATCTGC ATTTCCTGAA GAGGACAACA TATTTTTCTG GAAAGGAACA ATCAGTGGAA GCAAAGATAC TGTGTTTGAA
GGCACAGAGT ATAAGCTGTC TCTCTCTTTT CCCAATGATT ACCCTTTTAA GCCTCCAAAA GTCAAGTTTG AAACAACCTG
CTTCCACCCC AATGTTGATG TGCATGGCAA TATATGCTTA GACATACTCC AGGATAAATG GTCATCTGCA TATGATGTCA
GAACAATTCT TATATCCATC CAAAGTCTGC TTGGAGAGCC AAACATTAGT TCACCACTAA ACCCACAAGC AGCACAGCTA
TGGAGCAATC AAGAAGAATA CAGGAAGACG GTTGAGAAGT TGTACAAATC TGGAAATTGA 

>Vigan.06G246700.01
MATNTIHGNN ESAQPNNIAS SKQPLPPAKT VDSQSVLRRL QSELMALMMS GDSGISAFPE EDNIFFWKGT ISGSKDTVFE
GTEYKLSLSF PNDYPFKPPK VKFETTCFHP NVDVHGNICL DILQDKWSSA YDVRTILISI QSLLGEPNIS SPLNPQAAQL
WSNQEEYRKT VEKLYKSGN*