VIGGS:GBrowse

Vigan.06G218000.01

Basic Information:

Name:	Vigan.06G218000.01 Multiple alignment Variant Information
Position:	Chr06:35018154..35019787 (- strand)
Length:	1634

Functional Information:

Description:	Similar to Non-symbiotic hemoglobin. [H6WZ70, Vigna radiata]
GO:	Biological Process: oxygen transport (GO:0015671)
	Molecular Function: iron ion binding (GO:0005506)
	Molecular Function: oxygen binding (GO:0019825)
	Molecular Function: heme binding (GO:0020037)
InterPro:	Globin (IPR000971)
	Leghaemoglobin (IPR001032)
	Globin-like (IPR009050)
	Globin, structural domain (IPR012292)
	Leghaemoglobin, iron-binding site (IPR019824)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:6.56,187.41,7.02,12.52,28.26,19.82,3782.00,19.73
Arabidopsis thaliana homolog:	AT2G16060.1

Automatic updates:

Name:	KU891669 NCBI(nuccore)
Organism:	Vigna radiata
Description:	Vigna radiata cultivar T44 non-symbiotic hemoglobin (NSH) mRNA, complete cds.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:35018154..35018706 (- strand)
Length:	553
Type:	three_prime_UTR

Position:	Chr06:35018707..35018847 (- strand)
Length:	141
Type:	CDS

Position:	Chr06:35018979..35019095 (- strand)
Length:	117
Type:	CDS

Position:	Chr06:35019206..35019320 (- strand)
Length:	115
Type:	CDS

Position:	Chr06:35019418..35019626 (- strand)
Length:	209
Type:	CDS

Position:	Chr06:35019627..35019787 (- strand)
Length:	161
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.06G218000.01 class=Sequence position=Chr06:35018154..35019787 (- strand)
CAGATACACC ACAAAAGGTG GCATCAACCA AATCTATCCA CATATAATCC AAAAAATATG TTGTTTTGGA TATATTTTTT
ACTATTCTGG AAAGCAAATG GACTAAGAAA ACATGCAATG GGAATGACTC CACGTTGCAG TGAAAGGCCA ACTTCGTTTC
AATGAATCCC ACTATAAAAG CTTTACCAAA GCAAGCCACA ACATCAACAA CTTCCACTGC AATCACAATC CTAAACAAAT
ACCTTAGCAT ACCACACAAC ATGAACTCCA TGGGAAAATG TTTCACGGAA GAGCAAGAAG CTCTGGTGGT GAAATCATGG
AACGCGATGA AGAAGAATTC TGGGGAGTTG GGTCTCAAGT TTTTCTTGAA GTAAGCTTCT TCCATTTTTT CAAACTCTCT
TGCTTACGTT TTAACTTTAT CTCTTTCTCA AATCATTATT CAACTGATAT GGCTTCAAAC TTGGTAGAAT ATTTGAGATT
GCTCCATCAG CTCAGAAATT GTTCTCATTC TTGAGAGATT CAACCGTTCC TTTGGAGCAA AACCCCAAGC TCAAGCCCCA
TGCAACGTCT GTCTTTGTAA TGGTAAGCTG AAATTAAATT AACACTGAAC CAAATCTCCA GTTAATTATT AATTAAACTA
TTAATGTATT ATAGATGCCA TGTTTCTTGG TACCACTTTC TTGTTATTGT AGACCTGTGA TTCAGCAGTT CAACTGCGGA
AAGCTGGGAA AGTCACTGTC AGAGAATCCA CCTTGAAAAA ATTAGGTGCT ACCCATTTTA GAACTGGCGT TGCAAACGAG
CATTTTGAGG TATATAATAT AATCAACTTT CAATATAAGT ATGGTTGACT AATTGAACAT TGAAGTAATA TATGTGGATA
ATACTTTTGT AGAAGAGTAA TGTATGCAGT TGATTATATA TTCTCTCTGG TTTTGTTAAG GTGACAAAGT TTGCACTTTT
GGAGACCATA AAAGAAGCTG TACCTGAAAT GTGGTCACCA GAGATGAAGA ATGCATGGGC AGAAGCTTAT GATCAGCTGG
TGGATGCCAT TAAATCTGAA ATGAAACCAC CCTCCTCTTA GACAAACAAT TCCACACCTG AAGCTTTTCA TTCCATCCCT
CTGAAACTGA ATAAACTTGA TGACTGTTTG TGATAATAAA AGTGCCGAGT GTTGGTGCTT TTCTTTTGTG TGAATGTAAT
GTAGCTATTT AGAAGTTGCT AGGTAGGAAA GTAAGTGTCT GGCATTAATG TAACAGTTCT GAAATTGAAG TTGTCTGAAT
GAATTATAGC TGTTTGTGGC TTTGTGTACA TTTATTTGCT GTGTCTTCCC TGATGAAGGG ATAGTAGTTT AGCAATGGAA
CTTCAATGGG AGTTCACGAT GTTTCTTGAC ATCTTTTTCC AAGCCAAAAC AGAGGAACGG TAATCATAAC AAGCAAGTTT
CTCTTTAATT AAATAACTTT CATTTTTCAT TTCTCTCTCT TATTGTTTTT TATTAACCAA GCACATGTAT GGGTGTCCTA
CCCACATGTT AAAAATTTTG TAGAAACAGT ATCTCTATGT ATCCTTTTTT TTTCTTGAAA TAGAACCCAC GTGTAAAGAA
AGATACATCA TTTATCGAAA AAAATGTAGA AATT

[show][hide][copy]TRANSCRIPT

>Vigan.06G218000.01
CAGATACACC ACAAAAGGTG GCATCAACCA AATCTATCCA CATATAATCC AAAAAATATG TTGTTTTGGA TATATTTTTT
ACTATTCTGG AAAGCAAATG GACTAAGAAA ACATGCAATG GGAATGACTC CACGTTGCAG TGAAAGGCCA ACTTCGTTTC
AATGAATCCC ACTATAAAAG CTTTACCAAA GCAAGCCACA ACATCAACAA CTTCCACTGC AATCACAATC CTAAACAAAT
ACCTTAGCAT ACCACACAAC ATGAACTCCA TGGGAAAATG TTTCACGGAA GAGCAAGAAG CTCTGGTGGT GAAATCATGG
AACGCGATGA AGAAGAATTC TGGGGAGTTG GGTCTCAAGT TTTTCTTGAA AATATTTGAG ATTGCTCCAT CAGCTCAGAA
ATTGTTCTCA TTCTTGAGAG ATTCAACCGT TCCTTTGGAG CAAAACCCCA AGCTCAAGCC CCATGCAACG TCTGTCTTTG
TAATGACCTG TGATTCAGCA GTTCAACTGC GGAAAGCTGG GAAAGTCACT GTCAGAGAAT CCACCTTGAA AAAATTAGGT
GCTACCCATT TTAGAACTGG CGTTGCAAAC GAGCATTTTG AGGTGACAAA GTTTGCACTT TTGGAGACCA TAAAAGAAGC
TGTACCTGAA ATGTGGTCAC CAGAGATGAA GAATGCATGG GCAGAAGCTT ATGATCAGCT GGTGGATGCC ATTAAATCTG
AAATGAAACC ACCCTCCTCT TAGACAAACA ATTCCACACC TGAAGCTTTT CATTCCATCC CTCTGAAACT GAATAAACTT
GATGACTGTT TGTGATAATA AAAGTGCCGA GTGTTGGTGC TTTTCTTTTG TGTGAATGTA ATGTAGCTAT TTAGAAGTTG
CTAGGTAGGA AAGTAAGTGT CTGGCATTAA TGTAACAGTT CTGAAATTGA AGTTGTCTGA ATGAATTATA GCTGTTTGTG
GCTTTGTGTA CATTTATTTG CTGTGTCTTC CCTGATGAAG GGATAGTAGT TTAGCAATGG AACTTCAATG GGAGTTCACG
ATGTTTCTTG ACATCTTTTT CCAAGCCAAA ACAGAGGAAC GGTAATCATA ACAAGCAAGT TTCTCTTTAA TTAAATAACT
TTCATTTTTC ATTTCTCTCT CTTATTGTTT TTTATTAACC AAGCACATGT ATGGGTGTCC TACCCACATG TTAAAAATTT
TGTAGAAACA GTATCTCTAT GTATCCTTTT TTTTTCTTGA AATAGAACCC ACGTGTAAAG AAAGATACAT CATTTATCGA
AAAAAATGTA GAAATT

[show][hide][copy]CDS

>Vigan.06G218000.01
ATGAATCCCA CTATAAAAGC TTTACCAAAG CAAGCCACAA CATCAACAAC TTCCACTGCA ATCACAATCC TAAACAAATA
CCTTAGCATA CCACACAACA TGAACTCCAT GGGAAAATGT TTCACGGAAG AGCAAGAAGC TCTGGTGGTG AAATCATGGA
ACGCGATGAA GAAGAATTCT GGGGAGTTGG GTCTCAAGTT TTTCTTGAAA ATATTTGAGA TTGCTCCATC AGCTCAGAAA
TTGTTCTCAT TCTTGAGAGA TTCAACCGTT CCTTTGGAGC AAAACCCCAA GCTCAAGCCC CATGCAACGT CTGTCTTTGT
AATGACCTGT GATTCAGCAG TTCAACTGCG GAAAGCTGGG AAAGTCACTG TCAGAGAATC CACCTTGAAA AAATTAGGTG
CTACCCATTT TAGAACTGGC GTTGCAAACG AGCATTTTGA GGTGACAAAG TTTGCACTTT TGGAGACCAT AAAAGAAGCT
GTACCTGAAA TGTGGTCACC AGAGATGAAG AATGCATGGG CAGAAGCTTA TGATCAGCTG GTGGATGCCA TTAAATCTGA
AATGAAACCA CCCTCCTCTT AG

[show][hide][copy]PROTEIN

>Vigan.06G218000.01
MNPTIKALPK QATTSTTSTA ITILNKYLSI PHNMNSMGKC FTEEQEALVV KSWNAMKKNS GELGLKFFLK IFEIAPSAQK
LFSFLRDSTV PLEQNPKLKP HATSVFVMTC DSAVQLRKAG KVTVRESTLK KLGATHFRTG VANEHFEVTK FALLETIKEA
VPEMWSPEMK NAWAEAYDQL VDAIKSEMKP PSS*