GBrowse Details

Vigan.06G198800.01

Basic Information:
Name: Vigan.06G198800.01
Multiple alignment
Variant Information
Position: Chr06:33524198..33529174 (- strand)
Length: 4977
Functional Information:
Description: Similar to ubiquitin-conjugating enzyme E2 7-like. [XP_004171444.1, Cucumis sativus]
GO: Molecular Function: acid-amino acid ligase activity (GO:0016881)
InterPro: Ubiquitin-conjugating enzyme, E2 (IPR000608)
Ubiquitin-conjugating enzyme/RWD-like (IPR016135)
Ubiquitin-conjugating enzyme, active site (IPR023313)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:199.42,100.38,55.43,52.34,69.41,97.3 0,59.36,60.01
Arabidopsis thaliana homolog: AT5G59300.1
Structure :
Position: Chr06:33524198..33524442 (- strand)
Length: 245
Type: three_prime_UTR
Position: Chr06:33524443..33524520 (- strand)
Length: 78
Type: CDS
Position: Chr06:33525947..33526024 (- strand)
Length: 78
Type: CDS
Position: Chr06:33528018..33528118 (- strand)
Length: 101
Type: CDS
Position: Chr06:33528198..33528295 (- strand)
Length: 98
Type: CDS
Position: Chr06:33528763..33528865 (- strand)
Length: 103
Type: CDS
Position: Chr06:33528979..33529021 (- strand)
Length: 43
Type: CDS
Position: Chr06:33529022..33529174 (- strand)
Length: 153
Type: five_prime_UTR

>Vigan.06G198800.01 class=Sequence position=Chr06:33524198..33529174 (- strand)
CTCAGTTCTA ATAATCGCAG GCAGTGCAAT CCTGGAACGA CCTTAACCAC ATTCATTCAT ATTCATTCAT AGTTATAAAT
AATTTCAAAT CAATCAGAAG GTGTCGGTTT TGAAAAGATT AAACAATCTT TTTCTCTTCT TCCTTCTCCT TCCATGGCAT
CTCAGGCTAG CCTTCTCCTT CAAAAGCAGC TCAAAGGTAT AGTTTTTCTC TCGTATTTTT TCCATTTCCC TTTTGCGAAT
CCCCGCGCAA TAATAGCACC CTGTTTGGCG TCGATTCTCC GCGATGTTCT GATTGCCCTT TCCTCGCAGA TCTTTGCAAA
AACCCCGTCG ACGGCTTCTC CGCCGGTTTG GTCGACGAAA GCAACATTTT TGAATGGAGT GTCACCATAA TTGGACCACC
TGATACTCTA TAGTAAGCAA TCCCCTTTTG ATTTTTGTAT TATGCCCCTA GATTTTGAGA CTCTCCCACG CAATCCTTTC
TTGATTTTCC ATTCCATGTT TGGATTTTTG GGTTCTGCTG TGTCTTTCCT TTGGGGTTTG GATACCGGGC CGAAGATCGC
CTTTTTAATC GTTTATTTTG ATTCCTCCTT GAACAGTTTT CTTGGTTTAT GGACTTGGTT TCTTGCTACC TTAATCGCAA
GAATCCATTG CGGTTGTTGT TGTTTCTTTA ATGTTGAATT GTTTTTATTC CTCTTAAGCT GATGTTTTTT TTCCTTTCTA
AATTACTGTT TATGCTGTTT ACTACTGGGT TTTGTCTTAG TCGAGTTCGT TTGATTGCAC CACCAAATGT TCTTTTGATG
TCATTGTTTT GCTTTCCCTT CGTCGGTGTT AGATTTCTAC TTACGTTTCC TTGTTGTGAA TTGGTTGGAC TTCTTACAGC
GAGGGAGGCT TTTTTAATGC TATTATGAGT TTTCCATCCA ATTACCCAAA TAGTCCACCG TCAGTGAAGT TCACCTCAGA
GATATGGCAT CCCAATGGTT AGTTTATTTT CTTTACCTTT TTTTAATTTT TTATTTTTCC TTGATTCATA CCACATGAAA
GCCGTTCAAT TTGCAGTATA TCCTGATGGC CGGGTTTGCA TATCGATTCT TCATCCTCCT GGTGAGGATC CAAATGGTTA
TGAGCTTGCA AGTGAACGAT GGACACCTGT TCATACAGTA TGTGAAAATA TAAACTACTC ATCTTTTTTA CAACATTGGC
TTGTCTTGAA TATTGATGAC TGACACCATT TTATCTTGAA TACATCCAAA TCCAGCATCC TCTGGTTTAA TGTCATACTT
GAAACTTAAA ACACTAAATT AAGTGTGTAA AGACGTTCCA GATTCCCAAC AGCTGGTAAG ATGCAAAGCG ATTGTGTTTT
TCTGCTTGGG GTGTGCCCAT GTGCATATCA TTATGCCTAT TGCTGAGGAG TCTGCATATC AATGCTTTAC TGGATCATTG
GCATTGCAGT AAAGGCTGTT TAAGTACTTG TCATAAAATG GAGCTCTTCA TACGTCTTCC CTCCCCACTA TTCAACTTCC
TTCCCCATTT TGAAAGAAGA GAAGGAGATG ACATTAACAC CTTTAATCAA TTGTCAAATA AAGTGCAGCA TGAAGATTCT
GAAAGGATAA TTTTTCTAAG CTTTCATTCC ATAGATAGAG AATCCATCTG CTAAAAATTC CAATATAACA CTCTTAATAT
CGGGGTTCAG TGTAGTATTA AGATTAACGG AGACACTAGG AGTATTGTGT TAGTAGGACG GGTGGTAATA GAATATTACA
GTCATAAGGA TTTATTAATG GAAGGTTATC TTGAATAATG CGAAATCCCT TTGAAGCAAC TATTTGGGTT CGAAGGAAAC
AAGTACCATG AAATATTCGA AGTAGAAGTT TGAGTTTTAT GTGGGGAAAT TGAGATGTAT AGATCTAGTA CAACACGTCA
TGCGTATTTT CTTAAATTTT CTAATGGGGG AAGCGAAGGA AAAAATAAAG TTGCATCTAG CAAGGGCTTT AGTAGAAATG
AACAACACCC GGATGATTGA TGAGAAGAAT CCGGAGCTTA CAAATGAAGG ATCGAGTTCT GCATTGGGAA GTGGAAGCAT
AAATTTTCAA TCTTCCAGAA AAATATTGGT GGAAACGGTA TCTAAGATGA GTGAGCTTCT CTAGCATGTT TTAATCAGAA
ACAGTGGTCT TACAACTGAC AAATACTTTG GACATAATGC ATCTTTTTGA AATAGGGGTG GTGTGGTGGG TTCAGAAGGT
GAGAAGAGGG GTGTGCTTTT GATGTTATGA AAAATATGGG TCTGGAAATA TATTTGTAAA ATTCAACCGT ATAAGGTGTT
GCTGCTGGAG ATAGAAGTAG AAGAGCTCAA CATGGCAAAG TTTGAATGCT TTGAGGAACA TTTGGAAGGA AATAACTCCC
GGGCAAATAT CCTTGCACCA TATGATGGGT CTTACCACTA AAAGATCTTA GAAGTTATTG GGAATGATGA AATAAAGGTT
AATTGTTGAA CCTCACAGTT TTCATATATA TGAAGTTTAA GCAGGAGATG GTAATAGATG GTGTGTTATT ACCATTCAAT
ATTATATATT TTTACTTTAT CAATTGGCTT TCTATCAATT TGGCCTGACC TGCTCAGTCA AAAGGAGTCA ATTCTTTTGA
CCAGCGAATG GACAGATCAT GATGCATGTG ACTGGCTGGA GCTTATTGAG GCTTTTTAAT TTTTGTCATC ACAATTTAAT
CATTTACCCA AAGAACAATA TTTGGGTAAG CATTGGGTTG AACATATGGG TGGTGAAATG GTATTAACAG TTTCAAACTC
TTTTGTTGGA GTTACACCTT CATGTTTATC ATTAATCTCG GTTGAATATA GAGTAAAAGG ATCACTAGTT GTTTGAGTGT
TTCAAGTTTG GGATGGCTTG AAGGAATATG AAATGAAAGA CTAAGATTGA GTCAAGATCT TTTACGCTTA TTATATCAAA
CAAAACAACT AAATGGTTGT AAAGATGTCA AATGTTAAAT GTGTCAGAAC TTCTTAATAA CTTTGTTGGA GATCCTTTCG
AAATGGTATT GCTTTTTGTT GACCACTAGC AAATTTATAT ATTGTCACCC ATGAAGTCTT AAGTTTTTAA AGTAAGATGT
ATTAATATTG AAATATATTT TATCTTGCAG GTAGAGAGTA TAGTCTTGAG TATCATATCA ATGCTTTCCA GCCCTAATGA
TGAATCTCCT GCAAATGTTG AAGCCGCAGT AAGTTTGTCC ATCCGTTACT TATTTACTAG ATTGTTTTAC AGCAACCTAC
TTGTCTTTAC CGTCATATGG TTTGTATCCA AGAAAAGATG TTACTGTGAA TTTCATTAGA TGGTGCCGAA GTATAGTTAC
TTGGTATAAT AATAGATTGT CTATTATAGT TAGTTATTTC TATATTATTA TGGACTGTAA ATCAATTGCC TTAGGTTACT
TGTGATCTTG TACGTGCTTT AATTATTTCA GTAGGTATTC ATCATGACGT CAAGTTATGA TGAATGTTCT CCAAGATACT
TCATCTTGAT TGCTAGTTAG TGTAAGTGGT GAGATGCCAG GCTAGAATGT TAAATAGGAT ATACTCCTTC TCCAATTATT
AAGAAGAAAT GAACAAAAAA AGTTTCCTTT AAATAACTAA CACCAAACCA CCGACCCTTT TATCTGTCTA CCTCAAGCAA
TGGGGTTAGC GACCATATGA TCAACTCTCC TAAATGGGTT TTCTATCCGT CTTATAATTT TCAGTTAGCG GTAAAATTCT
TCCTTATTTT CTTCAATAGG TGTGCTATTC CAACTCACCC CCAAGGCATT TCATTCCTAA TCGTATATTG TATAGCAGTG
TCTATCCGAC GATAGCTACA TTCTCATCTT TGTTACATTG TGTTTATTCT CTTGTTGACT TTCACCCAAG ATTTAGTATC
ACACAACATC GTAAACCTTT ACCTTAAGCC GAAGCAGTGC TTTTTTAGTC ACATCTTGCA CGTAGATTGT TTCTTCCACC
TTCTGTTTCT CCATTGTTTT GTATACTTAA CCCGCCATGT TTAAACTGTG TACCTTGTGA CAAGGTGTGA TCTCCAATTT
CCACTACATT GTCTAAATGT TAAGATTTAA TGTTGGTAGT CATCCCTTTA ATTGTCTTGA TCTGAGAAAA ATTCTGAACC
GTTTTGTATG ATGGATGGAC GTAAGATATT TAAACTATGT AACTCGTGCA AAGCATGGTC TCCATTTTCT TATTAAGTGC
AGTGTCTAAA TATGGTCCAA GAAAAATCCT TAATCTTTTT GTTAAGACCT GTGAAGCATA GAAGCGAATA AAATCTGTGT
TTCTCATAGT ATAGTATGCA ATGGTTATGA TTTCCACATT AATAACGAGG ACCCGCCACA ATTTTTTTTT TTTTTTGAGA
TGTCAATTTC AATCAATTTC CATATTTGGT TTTATATTTA TCCTGATGTG ATGGTTTTCT TGATGTCCTT TTTAACTATA
AACGGCAGCA CGTATTGTAT ATGATTCTGT AGTCGTTTTT GTTCTGGGGA TTTCACATTA CCATTGCCAA TATCTTTACT
AGTTGAAATG CTTTGTGTGG GGGCGACAAA ATACTTTATT TTTGGTTTTA CTTCCTGTTG AGTTTGTTGT GACCTGTATG
ATATGGCATT GCAGAAGGAG TGGAGAGATA GGAGAGATGA TTTCAAGAAA AAGGTGAGCC GATGTGTAAG GAAGTCACAA
GAAATGCTGT GATTTGTGGG CGACCCCTCA TACTGCTTTT TGTGAACTGG AGGACATATA ATGTGTAATG GATTGGTTCA
CCTGTTACTG TTGCTGCGTA TAAAAATGGC ATTGGAACTT GTCCACATTC CTCCTTTCTT CAGTCCCCAT GTCTGTGCAT
GGCCATTTGT CCTAACTTGG AAAACAAACT GTATTCTAAG TGCTTTGGCC GGTCTTTTGA CTTTATTGGA AATTTACTTT
GTTCATTTGC AGAAGCT

>Vigan.06G198800.01
CTCAGTTCTA ATAATCGCAG GCAGTGCAAT CCTGGAACGA CCTTAACCAC ATTCATTCAT ATTCATTCAT AGTTATAAAT
AATTTCAAAT CAATCAGAAG GTGTCGGTTT TGAAAAGATT AAACAATCTT TTTCTCTTCT TCCTTCTCCT TCCATGGCAT
CTCAGGCTAG CCTTCTCCTT CAAAAGCAGC TCAAAGATCT TTGCAAAAAC CCCGTCGACG GCTTCTCCGC CGGTTTGGTC
GACGAAAGCA ACATTTTTGA ATGGAGTGTC ACCATAATTG GACCACCTGA TACTCTATAC GAGGGAGGCT TTTTTAATGC
TATTATGAGT TTTCCATCCA ATTACCCAAA TAGTCCACCG TCAGTGAAGT TCACCTCAGA GATATGGCAT CCCAATGTAT
ATCCTGATGG CCGGGTTTGC ATATCGATTC TTCATCCTCC TGGTGAGGAT CCAAATGGTT ATGAGCTTGC AAGTGAACGA
TGGACACCTG TTCATACAGT AGAGAGTATA GTCTTGAGTA TCATATCAAT GCTTTCCAGC CCTAATGATG AATCTCCTGC
AAATGTTGAA GCCGCAAAGG AGTGGAGAGA TAGGAGAGAT GATTTCAAGA AAAAGGTGAG CCGATGTGTA AGGAAGTCAC
AAGAAATGCT GTGATTTGTG GGCGACCCCT CATACTGCTT TTTGTGAACT GGAGGACATA TAATGTGTAA TGGATTGGTT
CACCTGTTAC TGTTGCTGCG TATAAAAATG GCATTGGAAC TTGTCCACAT TCCTCCTTTC TTCAGTCCCC ATGTCTGTGC
ATGGCCATTT GTCCTAACTT GGAAAACAAA CTGTATTCTA AGTGCTTTGG CCGGTCTTTT GACTTTATTG GAAATTTACT
TTGTTCATTT GCAGAAGCT

>Vigan.06G198800.01
ATGGCATCTC AGGCTAGCCT TCTCCTTCAA AAGCAGCTCA AAGATCTTTG CAAAAACCCC GTCGACGGCT TCTCCGCCGG
TTTGGTCGAC GAAAGCAACA TTTTTGAATG GAGTGTCACC ATAATTGGAC CACCTGATAC TCTATACGAG GGAGGCTTTT
TTAATGCTAT TATGAGTTTT CCATCCAATT ACCCAAATAG TCCACCGTCA GTGAAGTTCA CCTCAGAGAT ATGGCATCCC
AATGTATATC CTGATGGCCG GGTTTGCATA TCGATTCTTC ATCCTCCTGG TGAGGATCCA AATGGTTATG AGCTTGCAAG
TGAACGATGG ACACCTGTTC ATACAGTAGA GAGTATAGTC TTGAGTATCA TATCAATGCT TTCCAGCCCT AATGATGAAT
CTCCTGCAAA TGTTGAAGCC GCAAAGGAGT GGAGAGATAG GAGAGATGAT TTCAAGAAAA AGGTGAGCCG ATGTGTAAGG
AAGTCACAAG AAATGCTGTG A

>Vigan.06G198800.01
MASQASLLLQ KQLKDLCKNP VDGFSAGLVD ESNIFEWSVT IIGPPDTLYE GGFFNAIMSF PSNYPNSPPS VKFTSEIWHP
NVYPDGRVCI SILHPPGEDP NGYELASERW TPVHTVESIV LSIISMLSSP NDESPANVEA AKEWRDRRDD FKKKVSRCVR
KSQEML*